CuGenDBv2

Gene ID	CSPI05G20480
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	ferredoxin-thioredoxin reductase, variable chain
Genome location	Chr5:21564619..21565830
RNA-Seq Expression	CSPI05G20480
Synteny	CSPI05G20480
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0016310 - phosphorylation (biological process) GO:0030148 - sphingolipid biosynthetic process (biological process) GO:0003951 - NAD+ kinase activity (molecular function) GO:0017050 - D-erythro-sphingosine kinase activity (molecular function)
InterPro domains	IPR004207 - Ferredoxin thioredoxin reductase, alpha chain IPR008990 - Electron transport accessory-like domain superfamily IPR044166 - Ferredoxin-thioredoxin reductase, variable chain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0034101.1 sphingoid long-chain bases kinase 1 [Cucumis melo var. makuwa]

2.4e-82

92.27

Show/hide

Query:  MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSIRRGRRLFSEVPVRSDSGTSPSATAVSAATTSLSEEETDEA
        MI IANSIG++P P PSSAS+AARFACSMTVFST+DV+SSFSSSVCSLSS+VVNPFNCSIRRGRRLFSEV VRSDSGTS SATAVSAATTSLSEEETDEA
Subjt:  MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSIRRGRRLFSEVPVRSDSGTSPSATAVSAATTSLSEEETDEA

Query:  AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAARIGARVRVKVPLKVYHVAKLP+ANLEGMEGV+KDYVRVWKGKRVSANLPYKVEFVVPVEGRPP+KFVAHLKEEEFEYV
Subjt:  AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

XP_004147092.1 ferredoxin-thioredoxin reductase, variable chain [Cucumis sativus]

6.4e-88

99.45

Show/hide

Query:  MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSIRRGRRLFSEVPVRSDSGTSPSATAVSAATTSLSEEETDEA
        MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSIRRGRRLFSEVPVRSDSGTS SATAVSAATTSLSEEETDEA
Subjt:  MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSIRRGRRLFSEVPVRSDSGTSPSATAVSAATTSLSEEETDEA

Query:  AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
Subjt:  AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

XP_008445916.1 PREDICTED: ferredoxin-thioredoxin reductase, variable chain [Cucumis melo]

2.4e-82

92.27

Show/hide

Query:  MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSIRRGRRLFSEVPVRSDSGTSPSATAVSAATTSLSEEETDEA
        MI IANSIG++P P PSSAS+AARFACSMTVFST+DV+SSFSSSVCSLSS+VVNPFNCSIRRGRRLFSEV VRSDSGTS SATAVSAATTSLSEEETDEA
Subjt:  MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSIRRGRRLFSEVPVRSDSGTSPSATAVSAATTSLSEEETDEA

Query:  AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAARIGARVRVKVPLKVYHVAKLP+ANLEGMEGV+KDYVRVWKGKRVSANLPYKVEFVVPVEGRPP+KFVAHLKEEEFEYV
Subjt:  AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

XP_023549490.1 ferredoxin-thioredoxin reductase, variable chain, chloroplastic-like [Cucurbita pepo subsp. pepo]

3.4e-73

85.64

Show/hide

Query:  MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSIRRGRRLFSEVPVRSDSGTSPSATAVSAATTSLSEEETDEA
        MI++ANSIGVIP+PAP+    AAR ACSMTVFS+ D KSS+S SV SLSS+VVNPFNCSIRRGRR FSEV V+SDSGT  SA AVSAATTSLSE+ETDEA
Subjt:  MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSIRRGRRLFSEVPVRSDSGTSPSATAVSAATTSLSEEETDEA

Query:  AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAARIGARVRVKVPLKVYHVAKLP+A+LEGMEGV+KDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
Subjt:  AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

XP_038893043.1 ferredoxin-thioredoxin reductase, variable chain-like [Benincasa hispida]

2.5e-84

95.03

Show/hide

Query:  MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSIRRGRRLFSEVPVRSDSGTSPSATAVSAATTSLSEEETDEA
        MISIANSIGVIP+PAPSSAS AAR ACSMTVFS ADVKSS+SSSVCSLSS+VVNPFNCSIRRGRRLFSEVPVRSDSGTSPSATAVSAATTSLSEEETDEA
Subjt:  MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSIRRGRRLFSEVPVRSDSGTSPSATAVSAATTSLSEEETDEA

Query:  AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAARIGARVRVKVPLKVYHVAKLP+ANLEGMEGV+KDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEY+
Subjt:  AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KV36 FeThRed_A domain-containing protein

3.1e-88

99.45

Show/hide

Query:  MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSIRRGRRLFSEVPVRSDSGTSPSATAVSAATTSLSEEETDEA
        MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSIRRGRRLFSEVPVRSDSGTS SATAVSAATTSLSEEETDEA
Subjt:  MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSIRRGRRLFSEVPVRSDSGTSPSATAVSAATTSLSEEETDEA

Query:  AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
Subjt:  AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

A0A1S3BEI2 ferredoxin-thioredoxin reductase, variable chain

1.1e-82

92.27

Show/hide

Query:  MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSIRRGRRLFSEVPVRSDSGTSPSATAVSAATTSLSEEETDEA
        MI IANSIG++P P PSSAS+AARFACSMTVFST+DV+SSFSSSVCSLSS+VVNPFNCSIRRGRRLFSEV VRSDSGTS SATAVSAATTSLSEEETDEA
Subjt:  MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSIRRGRRLFSEVPVRSDSGTSPSATAVSAATTSLSEEETDEA

Query:  AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAARIGARVRVKVPLKVYHVAKLP+ANLEGMEGV+KDYVRVWKGKRVSANLPYKVEFVVPVEGRPP+KFVAHLKEEEFEYV
Subjt:  AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

A0A5D3D039 Sphingoid long-chain bases kinase 1

1.1e-82

92.27

Show/hide

Query:  MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSIRRGRRLFSEVPVRSDSGTSPSATAVSAATTSLSEEETDEA
        MI IANSIG++P P PSSAS+AARFACSMTVFST+DV+SSFSSSVCSLSS+VVNPFNCSIRRGRRLFSEV VRSDSGTS SATAVSAATTSLSEEETDEA
Subjt:  MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSIRRGRRLFSEVPVRSDSGTSPSATAVSAATTSLSEEETDEA

Query:  AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAARIGARVRVKVPLKVYHVAKLP+ANLEGMEGV+KDYVRVWKGKRVSANLPYKVEFVVPVEGRPP+KFVAHLKEEEFEYV
Subjt:  AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

A0A6J1H0Z6 ferredoxin-thioredoxin reductase, variable chain, chloroplastic-like

8.2e-73

85.08

Show/hide

Query:  MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSIRRGRRLFSEVPVRSDSGTSPSATAVSAATTSLSEEETDEA
        MI++ANSIGVIP+PAP+    AAR ACSMTVFS+ D KSS+S SV SLSS+VVNPFNCSI RGRR FSEV V+SDSGT  SA AVSAATTSLSE+ETDEA
Subjt:  MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSIRRGRRLFSEVPVRSDSGTSPSATAVSAATTSLSEEETDEA

Query:  AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAARIGARVRVKVPLKVYHVAKLP+A+LEGMEGV+KDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
Subjt:  AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

A0A6J1KDF2 ferredoxin-thioredoxin reductase, variable chain, chloroplastic-like

4.1e-72

84.53

Show/hide

Query:  MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSIRRGRRLFSEVPVRSDSGTSPSATAVSAATTSLSEEETDEA
        MI++ANSIGVIP+PAP+    AAR ACSMTVFS+ D KSS+SSSV SLSS+VVNPFNCSI RGRR FSEV V+SDSGT  SA AVSAA TSLSE+ETDEA
Subjt:  MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSIRRGRRLFSEVPVRSDSGTSPSATAVSAATTSLSEEETDEA

Query:  AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAARIGARVRVKVPL VYHVAKLP+A+LEGMEGV+KDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
Subjt:  AAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

SwissProt top hits

e value

%identity

Alignment

P38365 Ferredoxin-thioredoxin reductase, variable chain, chloroplastic

3.6e-17

37.71

Show/hide

Query:  GVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSIRRGR-RLFSEVPVRSDSGTSPSATAVSAATTSLSEEETDEAAAARIGA
        GV    + ++AS A   A +         +++ S++VC  S+L       +  R R  +  EV ++SDS T       S++++   E+E  +    ++G 
Subjt:  GVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSIRRGR-RLFSEVPVRSDSGTSPSATAVSAATTSLSEEETDEAAAARIGA

Query:  RVRVKVPLKVYHVAKLPDANL-EGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        +V+VK PLKVYHV KLP+  L   M GV+K YV  WKGK +S N P+KVE+ + V  R  VK V HLKEEEFE +
Subjt:  RVRVKVPLKVYHVAKLPDANL-EGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

P80680 Ferredoxin-thioredoxin reductase, variable chain

4.7e-25

62.11

Show/hide

Query:  ATTSLSEEETDEAAAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRP-PVKFVAHLKEEEFEYV
        A+  ++ EE   AAA +IG RVRV  PL+VYHV K PD +++GMEGVVK YV VWKGKRV+AN P+KVEF + VEG+P PV+F AHL+E+EFE+V
Subjt:  ATTSLSEEETDEAAAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRP-PVKFVAHLKEEEFEYV

Arabidopsis top hits

e value

%identity

Alignment

AT5G08410.1 ferredoxin/thioredoxin reductase subunit A (variable subunit) 2

5.5e-29

48.7

Show/hide

Query:  SMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSIRRGRRLFSEVPVRSDSGTSPSATAVSAATTSLSEEETDEAAAARIGARVRVKVPLKVYHVAKLPDAN
        S ++F    + +S+  S C+ S    NP   +IR       ++ V+  S  S  A A  +++TSL  EE DE A  +IGARVRV VPLKVYHV ++P+  
Subjt:  SMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSIRRGRRLFSEVPVRSDSGTSPSATAVSAATTSLSEEETDEAAAARIGARVRVKVPLKVYHVAKLPDAN

Query:  LEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        L GMEG +KDYV +WKGK++SANLP+KV+FV  +EGR PVKF  HLKE+EFE +
Subjt:  LEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

AT5G23440.1 ferredoxin/thioredoxin reductase subunit A (variable subunit) 1

7.2e-29

55.28

Show/hide

Query:  SIRRGRRLFSEVPVRSDSGTSPSATAVSAATTSLSEEETDEAAAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFV
        S R+  R      V   S  S +A A  +++ S SEEE +  A A+IG+RVRV  PLKVYHV ++P+ +LEGMEG +KDYV VWKGKR+SANLPYK+EF 
Subjt:  SIRRGRRLFSEVPVRSDSGTSPSATAVSAATTSLSEEETDEAAAARIGARVRVKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFV

Query:  VPVEGRPPVKFVAHLKEEEFEYV
          +EGR  VKFV+HLKE+EFE++
Subjt:  VPVEGRPPVKFVAHLKEEEFEYV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGATTAGTATTGCGAACAGTATCGGCGTGATACCATCACCGGCTCCGTCGTCGGCGTCGATGGCTGCACGTTTTGCCTGTTCTATGACGGTATTCTCTACTGCTGATGT
TAAATCTTCCTTTTCCTCATCCGTTTGTTCTCTATCGTCACTTGTTGTTAATCCTTTCAACTGCTCGATTCGAAGAGGGAGAAGATTGTTTAGCGAGGTTCCAGTTAGAT
CAGATTCTGGAACTTCGCCTTCAGCTACCGCTGTTTCGGCGGCGACTACGTCATTGTCGGAGGAAGAGACTGATGAAGCGGCTGCCGCTAGGATTGGAGCTAGAGTTAGG
GTTAAGGTGCCTTTGAAGGTGTATCATGTAGCGAAGTTACCAGATGCAAATCTTGAGGGAATGGAAGGAGTGGTGAAGGATTATGTACGTGTTTGGAAAGGGAAGCGTGT
TTCTGCTAATCTTCCGTATAAGGTGGAGTTTGTTGTTCCTGTTGAAGGTCGTCCACCTGTCAAATTTGTTGCTCATCTTAAGGAGGAAGAGTTTGAATACGTTTAA

mRNA sequence

Show/hide mRNA sequence

TCCTTTTCTTTTTTCAAAAGAAAGAATAGAAAATAAATTTGCTCTTCACGAAGTGGAGAATATCTGGTAAGGTAAGGTAAGGATGTGTGCGTGTGAGTGTGTGTGGACAG
CGGCAATAAACTAATAAAATAAAATTGAAGGAAGAGGAAACAATTTTAAAAACTCTCAAACTAATATTCATTTCCTTCTTCGGCGAAACACTCCTCCCGCGGCACAGAAA
TGATTAGTATTGCGAACAGTATCGGCGTGATACCATCACCGGCTCCGTCGTCGGCGTCGATGGCTGCACGTTTTGCCTGTTCTATGACGGTATTCTCTACTGCTGATGTT
AAATCTTCCTTTTCCTCATCCGTTTGTTCTCTATCGTCACTTGTTGTTAATCCTTTCAACTGCTCGATTCGAAGAGGGAGAAGATTGTTTAGCGAGGTTCCAGTTAGATC
AGATTCTGGAACTTCGCCTTCAGCTACCGCTGTTTCGGCGGCGACTACGTCATTGTCGGAGGAAGAGACTGATGAAGCGGCTGCCGCTAGGATTGGAGCTAGAGTTAGGG
TTAAGGTGCCTTTGAAGGTGTATCATGTAGCGAAGTTACCAGATGCAAATCTTGAGGGAATGGAAGGAGTGGTGAAGGATTATGTACGTGTTTGGAAAGGGAAGCGTGTT
TCTGCTAATCTTCCGTATAAGGTGGAGTTTGTTGTTCCTGTTGAAGGTCGTCCACCTGTCAAATTTGTTGCTCATCTTAAGGAGGAAGAGTTTGAATACGTTTAATCAGG
CTTGTTATTCATCATCCTCTTCATTCTAATGAATCATCAAGCCAAGACAATTGTTGTTTTTCCGATCTCAGTATTAATACCAAGCTCCCTTGTGCAGTATTATTGTCAAC
CTTTTAAGGTTTGATCTTCTTCTATATTTCTATCTACACCATTTACTCTTTGCCTTTGTAATGTAGAAAAATTGCTCGAGTGTTTTTCTCCTGAGCTAGTTAACTTTCTC
GATTCTCGATGTGGCTTTGTAAAATAATTGCGCCAAGACAAGAGGAAATTTAGTCATCTAATACATGTCTGATCCAAATGGTTTCACAATCGGTTACTCTTGTATGGATG
TTGTTTCAACAACTTATTGTGCTTCATATTTTACTTGGAGGGAGGATGGGGATTTGAAGTGGTTGGACTTTCCTTCCATTGTCAAGATAAATGCATACTTGTTTCTTGTT
AA

Protein sequence

Show/hide protein sequence

MISIANSIGVIPSPAPSSASMAARFACSMTVFSTADVKSSFSSSVCSLSSLVVNPFNCSIRRGRRLFSEVPVRSDSGTSPSATAVSAATTSLSEEETDEAAAARIGARVR
VKVPLKVYHVAKLPDANLEGMEGVVKDYVRVWKGKRVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

CSPI05G20480 (gene) of Cucumber (PI 183967) v1 genome