; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI05G20620 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G20620
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionPentatricopeptide repeat-containing protein, chloroplastic
Genome locationChr5:21644894..21645106
RNA-Seq ExpressionCSPI05G20620
SyntenyCSPI05G20620
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW36829.1 Pentatricopeptide repeat-containing protein, chloroplastic [Vitis vinifera]3.4e-0547.54Show/hide
Query:  MGTMGAMDDLPGRARRIKEAWDFIENMPIVQGLVYMVPCWVLVKFTKMMNWERKQLTNCLS
        M   GAM DL GRA R+ EAWDFI+ MPI   +        L  FTKM++W R+Q T  L+
Subjt:  MGTMGAMDDLPGRARRIKEAWDFIENMPIVQGLVYMVPCWVLVKFTKMMNWERKQLTNCLS
TrEMBL top hitse value%identityAlignment
A0A438DMZ6 Pentatricopeptide repeat-containing protein, chloroplastic1.7e-0547.54Show/hide
Query:  MGTMGAMDDLPGRARRIKEAWDFIENMPIVQGLVYMVPCWVLVKFTKMMNWERKQLTNCLS
        M   GAM DL GRA R+ EAWDFI+ MPI   +        L  FTKM++W R+Q T  L+
Subjt:  MGTMGAMDDLPGRARRIKEAWDFIENMPIVQGLVYMVPCWVLVKFTKMMNWERKQLTNCLS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G11290.1 Pentatricopeptide repeat (PPR) superfamily protein3.1e-0458.06Show/hide
Query:  ITMGTMGAMDDLPGRARRIKEAWDFIENMPI
        ++M   GAM DL GRA R+ EAWDFI  MP+
Subjt:  ITMGTMGAMDDLPGRARRIKEAWDFIENMPI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAAGGACCTTCAATGGATCACTATGGGCACTATGGGCGCTATGGACGATCTTCCTGGTCGAGCTCGCAGGATCAAAGAAGCCTGGGATTTTATAGAAAACATGCC
TATAGTCCAGGGTTTAGTGTATATGGTGCCATGTTGGGTGCTTGTAAAATTCACAAAAATGATGAATTGGGAGAGAAAGCAGCTAACAAATTGTTTGAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACAAGGACCTTCAATGGATCACTATGGGCACTATGGGCGCTATGGACGATCTTCCTGGTCGAGCTCGCAGGATCAAAGAAGCCTGGGATTTTATAGAAAACATGCC
TATAGTCCAGGGTTTAGTGTATATGGTGCCATGTTGGGTGCTTGTAAAATTCACAAAAATGATGAATTGGGAGAGAAAGCAGCTAACAAATTGTTTGAGTTGA
Protein sequenceShow/hide protein sequence
MDKDLQWITMGTMGAMDDLPGRARRIKEAWDFIENMPIVQGLVYMVPCWVLVKFTKMMNWERKQLTNCLS