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CSPI05G21230 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G21230
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTranscription termination factor MTERF5
Genome locationChr5:22054525..22055419
RNA-Seq ExpressionCSPI05G21230
SyntenyCSPI05G21230
Gene Ontology termsGO:0006353 - DNA-templated transcription, termination (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domainsIPR003690 - Transcription termination factor, mitochondrial/chloroplastic
IPR038538 - MTERF superfamily, mitochondrial/chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8648655.1 hypothetical protein Csa_008541 [Cucumis sativus]6.0e-8598.16Show/hide
Query:  AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRL
        AVK VKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLR+VADFCFNTAKLDPGTLISYPVLFKYSV+KRL
Subjt:  AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRL

Query:  RPRYKVLEVLKVKNLLKNEKSAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL
        RPRYKVLEVLKVKNLLKNEKSAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL
Subjt:  RPRYKVLEVLKVKNLLKNEKSAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL

KAE8648669.1 hypothetical protein Csa_007829 [Cucumis sativus]1.4e-8193.87Show/hide
Query:  AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRL
        AVKTVKELGVEPKDFKFVHAVTTVLSMSDS WKKKINVMKSLGWSE EI TAFK++PPYLTCSE+K+RDVADFCFNTAKLDPGTLI YPVLFKYSVDKRL
Subjt:  AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRL

Query:  RPRYKVLEVLKVKNLLKNEKSAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL
        RPRYKVLEVLKVKNLLKNEKS QLFFRGER+FVENYIVKHLDEIPNLMDIYRGNVASETKSVL
Subjt:  RPRYKVLEVLKVKNLLKNEKSAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL

XP_031741759.1 transcription termination factor MTERF5, chloroplastic-like [Cucumis sativus]6.0e-8598.16Show/hide
Query:  AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRL
        AVK VKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLR+VADFCFNTAKLDPGTLISYPVLFKYSV+KRL
Subjt:  AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRL

Query:  RPRYKVLEVLKVKNLLKNEKSAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL
        RPRYKVLEVLKVKNLLKNEKSAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL
Subjt:  RPRYKVLEVLKVKNLLKNEKSAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL

XP_031741760.1 transcription termination factor MTERF9, chloroplastic-like [Cucumis sativus]1.4e-8193.87Show/hide
Query:  AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRL
        AVKTVKELGVEPKDFKFVHAVTTVLSMSDS WKKKINVMKSLGWSE EI TAFK++PPYLTCSE+K+RDVADFCFNTAKLDPGTLI YPVLFKYSVDKRL
Subjt:  AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRL

Query:  RPRYKVLEVLKVKNLLKNEKSAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL
        RPRYKVLEVLKVKNLLKNEKS QLFFRGER+FVENYIVKHLDEIPNLMDIYRGNVASETKSVL
Subjt:  RPRYKVLEVLKVKNLLKNEKSAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL

XP_031741908.1 transcription termination factor MTERF5, chloroplastic-like isoform X1 [Cucumis sativus]1.7e-7689.57Show/hide
Query:  AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRL
        AVKTVKELGVEPKD KFV AV+ V+S SDS WKKKINVMKSLGWSE EI TAFK++PP+  CSE+K+RDVADFCFNTAKLDPGTLI YPVLFKYSVDKRL
Subjt:  AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRL

Query:  RPRYKVLEVLKVKNLLKNEKSAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL
        RPRYKVLEVLKVKNLLKNEKSAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL
Subjt:  RPRYKVLEVLKVKNLLKNEKSAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL

TrEMBL top hitse value%identityAlignment
A0A1S3BDE1 transcription termination factor MTERF2, chloroplastic-like1.8e-6679.75Show/hide
Query:  AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRL
        AVKTVKELG+EPK   FV+AV   LSMSDS WKKKINVMKSLGWS+ EIFTAFK+ P YL CSE+K+RDVADFCFNTAKLDPGTLISYP LFK S DKRL
Subjt:  AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRL

Query:  RPRYKVLEVLKVKNLLKNEKSAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL
        RPRYKVLEVLKVKNLLKN+K A +   GER FVE Y+VKHLDEIPNLMDIY GNV +ETKSVL
Subjt:  RPRYKVLEVLKVKNLLKNEKSAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL

A0A1S3BH03 uncharacterized protein LOC1034895401.8e-6681.1Show/hide
Query:  AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRL
        AVKTVKELGVEPKD  FV+AV+ V SM+ S+WKKKINVMKSLGWSE EIFTAFK++P  LTCSE+K+RDVADFCFNTAKLDPGTLISYPV F  SVDKRL
Subjt:  AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRL

Query:  RPRYKVLEVLKVKNLLKNEKSAQL--FFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSV
        RPRYKVLEVLKVKNLLKN+K A    F +GEREFV+N +VKHLDEIPNLMDIYRGN ASETKSV
Subjt:  RPRYKVLEVLKVKNLLKNEKSAQL--FFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSV

A0A5A7SW09 Transcription termination factor MTERF21.8e-6679.75Show/hide
Query:  AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRL
        AVKTVKELG+EPK   FV+AV   LSMSDS WKKKINVMKSLGWS+ EIFTAFK+ P YL CSE+K+RDVADFCFNTAKLDPGTLISYP LFK S DKRL
Subjt:  AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRL

Query:  RPRYKVLEVLKVKNLLKNEKSAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL
        RPRYKVLEVLKVKNLLKN+K A +   GER FVE Y+VKHLDEIPNLMDIY GNV +ETKSVL
Subjt:  RPRYKVLEVLKVKNLLKNEKSAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL

A0A5D3CWN7 Transcription termination factor MTERF51.8e-6681.1Show/hide
Query:  AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRL
        AVKTVKELGVEPKD  FV+AV+ V SM+ S+WKKKINVMKSLGWSE EIFTAFK++P  LTCSE+K+RDVADFCFNTAKLDPGTLISYPV F  SVDKRL
Subjt:  AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRL

Query:  RPRYKVLEVLKVKNLLKNEKSAQL--FFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSV
        RPRYKVLEVLKVKNLLKN+K A    F +GEREFV+N +VKHLDEIPNLMDIYRGN ASETKSV
Subjt:  RPRYKVLEVLKVKNLLKNEKSAQL--FFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSV

A0A5D3CXX8 Transcription termination factor MTERF21.8e-6679.75Show/hide
Query:  AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRL
        AVKTVKELG+EPK   FV+AV   LSMSDS WKKKINVMKSLGWS+ EIFTAFK+ P YL CSE+K+RDVADFCFNTAKLDPGTLISYP LFK S DKRL
Subjt:  AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRL

Query:  RPRYKVLEVLKVKNLLKNEKSAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL
        RPRYKVLEVLKVKNLLKN+K A +   GER FVE Y+VKHLDEIPNLMDIY GNV +ETKSVL
Subjt:  RPRYKVLEVLKVKNLLKNEKSAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL

SwissProt top hitse value%identityAlignment
Q9FM80 Transcription termination factor MTERF9, chloroplastic9.2e-0430.91Show/hide
Query:  KELGVEPKD--FKFVHAVTTVLSMS-DSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCS-EDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLR
        KELG  P+D   K V     +L  S D  +  +IN ++S+G   ++I          L+ S ED L+    +  N    +   L  YP+    S+D+R+R
Subjt:  KELGVEPKD--FKFVHAVTTVLSMS-DSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCS-EDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLR

Query:  PRYKVLEVLK
        PR++ L  LK
Subjt:  PRYKVLEVLK

Arabidopsis top hitse value%identityAlignment
AT1G21150.1 Mitochondrial transcription termination factor family protein4.3e-1728.38Show/hide
Query:  GVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLE
        G +PK   FVHA+      S+S  ++K  + +  GWS+ +   A  +FP  +T S++K+    ++  N   L    +++ PV+   S++KR++PR +V+ 
Subjt:  GVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLE

Query:  VLKVKNLLKNE--KSAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGN
        +L  K L+K E      +      EF++ +++K+ DE+P L+  +  N
Subjt:  VLKVKNLLKNE--KSAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGN

AT1G61970.1 Mitochondrial transcription termination factor family protein7.7e-1425.52Show/hide
Query:  VKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLRD--------------------------------
        +K V E+G +P   KFV A+  +  M++   ++K+++ KSLG+   +++++FKK+P  L  SE K+ D                                
Subjt:  VKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLRD--------------------------------

Query:  ---VADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNE--KSAQLFFRGEREFVENYIVKHLDE--IPNLMDIYRGN
             +F           ++S P +F YS++KR+ PR  V++ L  K L++NE    + +    ++ F+  Y+  H+D+  +  LM IYR +
Subjt:  ---VADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNE--KSAQLFFRGEREFVENYIVKHLDE--IPNLMDIYRGN

AT1G62010.1 Mitochondrial transcription termination factor family protein4.5e-1429.29Show/hide
Query:  AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKL-------------RDV-----------------
        ++K V E+G +P    FVHA+  +  MSD   ++KI V +S+G+S ++++  FKK+P  LT SE K+             RDV                 
Subjt:  AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKL-------------RDV-----------------

Query:  -----ADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNE--KSAQLFFRGEREFVENYIVKHLDE--IPNLMDIYRGNVASET
              +F           + S P +  YS++KR  PR  V++VL  K LL++E    + +       F+  Y+ KH D+  +  LM I+ GN  S T
Subjt:  -----ADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNE--KSAQLFFRGEREFVENYIVKHLDE--IPNLMDIYRGNVASET

AT5G07900.1 Mitochondrial transcription termination factor family protein3.0e-1832.68Show/hide
Query:  KTVKELGVEPKDFKFVHAVTTVLSMSD-SNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLR
        K  +E+G  P+   FV A+  +    + S W K   V +  GWSE++I  AFKK P  +  SE K+    ++  N   + P ++   PV+  +S++KR+ 
Subjt:  KTVKELGVEPKDFKFVHAVTTVLSMSD-SNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLR

Query:  PRYKVLEVLKVKNLLKNEKS-AQLFFRGEREFVENYIVKHLDEIPNLMDIYRG
        PR  V +VL    L+K + S   L    E+ F+E  ++K+ +E+P LM++Y G
Subjt:  PRYKVLEVLKVKNLLKNEKS-AQLFFRGEREFVENYIVKHLDEIPNLMDIYRG

AT5G64950.1 Mitochondrial transcription termination factor family protein1.1e-1532.43Show/hide
Query:  VKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLR
        V    +LG        VHAV ++ S+S+  + +K+ +  + G+SE+EI    ++ P  + CSEDKL    +F      L+   L   P +  Y+++KR+ 
Subjt:  VKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLR

Query:  PRYKVLEVLKVKNLLKNEKSAQLFFRG-----EREFVENYIVKHLDEI
        PR KVL++L+ K LL  E+  +    G     E  F+E Y+V+  DEI
Subjt:  PRYKVLEVLKVKNLLKNEKSAQLFFRG-----EREFVENYIVKHLDEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCAGTGAAAACGGTTAAAGAATTAGGCGTTGAACCTAAGGATTTTAAGTTTGTTCATGCAGTTACTACAGTGCTTTCAATGAGTGATTCAAATTGGAAGAAGAAAATAAA
TGTTATGAAGAGTTTAGGATGGTCTGAGAATGAGATTTTTACAGCATTTAAGAAATTTCCACCTTATTTAACTTGTTCGGAGGATAAATTGAGGGATGTTGCAGATTTCT
GTTTCAACACTGCAAAGTTAGATCCAGGAACTCTAATTAGTTACCCTGTGTTATTCAAGTATTCAGTCGACAAGCGGCTCCGACCGAGGTACAAAGTTCTTGAGGTTTTG
AAGGTGAAAAATCTTCTTAAGAACGAAAAGAGTGCTCAGTTGTTTTTCCGAGGGGAGAGAGAATTTGTGGAGAATTATATTGTTAAGCATTTGGATGAAATCCCAAATCT
GATGGATATATACCGAGGCAATGTCGCATCCGAAACCAAATCTGTTCTATAG
mRNA sequenceShow/hide mRNA sequence
GCAGTGAAAACGGTTAAAGAATTAGGCGTTGAACCTAAGGATTTTAAGTTTGTTCATGCAGTTACTACAGTGCTTTCAATGAGTGATTCAAATTGGAAGAAGAAAATAAA
TGTTATGAAGAGTTTAGGATGGTCTGAGAATGAGATTTTTACAGCATTTAAGAAATTTCCACCTTATTTAACTTGTTCGGAGGATAAATTGAGGGATGTTGCAGATTTCT
GTTTCAACACTGCAAAGTTAGATCCAGGAACTCTAATTAGTTACCCTGTGTTATTCAAGTATTCAGTCGACAAGCGGCTCCGACCGAGGTACAAAGTTCTTGAGGTTTTG
AAGGTGAAAAATCTTCTTAAGAACGAAAAGAGTGCTCAGTTGTTTTTCCGAGGGGAGAGAGAATTTGTGGAGAATTATATTGTTAAGCATTTGGATGAAATCCCAAATCT
GATGGATATATACCGAGGCAATGTCGCATCCGAAACCAAATCTGTTCTATAGGATTGGAAGGTAGTTAGTTAATTAGTGTCATAGTTCTTCTATTAGTTGCTCTAAACAA
AGATTGACTTTTGTGAATGGAGACCCAGTAGAGGAGGTCTACATCAGCCCTGCGTCTCAAAGAGAAAATACACCGTTGATTTGCTAAATGACACAGGTATGTTGGGTACG
GTCTGCTGACATTAATAATGTTCTTATAGTTTAAATTTGAGCATCATGTGATCTTCAAATGGGAGAGCATTTTTGTTGTTATTAAGCCTACTGTCTTAAATAACACTGCT
TCTTGAGCTTTTCAAATGGGGTGGGAGGGTTGTGTTGTTTTTGCATCCAAATTAAGGCAATTAGTTAGGTAAATCTATTTGGTGTATAATTCTTCATAGACATGTTAATC
TTGAAATTGGAGGCC
Protein sequenceShow/hide protein sequence
AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLEVL
KVKNLLKNEKSAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL