CuGenDBv2

Gene ID	CSPI05G21460
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Photosystem II CP47 reaction center protein
Genome location	Chr5:22187986..22190429
RNA-Seq Expression	CSPI05G21460
Synteny	CSPI05G21460
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0016168 - chlorophyll binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domains	IPR000932 - Photosystem antenna protein-like IPR036408 - Photosystem I PsaA/PsaB superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AAP57675.1 photosystem II 47 kDa protein, partial [Cucumis sativus]

1.9e-34

97.3

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Query:  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEFGAFQKLGDPTTKRV
        DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLF DVF GIDPDLDTQVEFGAFQKLGDPTTKRV
Subjt:  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEFGAFQKLGDPTTKRV

KAE8648680.1 hypothetical protein Csa_008024 [Cucumis sativus]

1.5e-42

97.67

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Query:  MSGNYTPIHAHKDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEFGAFQKLGDPTTKRV
        MSGNYTPIHAHKDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLF DVF GIDPDLDTQVEFGAFQKLGDPTTKRV
Subjt:  MSGNYTPIHAHKDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEFGAFQKLGDPTTKRV

QWL16348.1 photosystem II CP47 chlorophyll apoprotein [Plantago elongata]

5.7e-34

97.26

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Query:  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEFGAFQKLGDPTTKR
        DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLF DVF GIDPDLDTQVEFGAFQKLGDPTTKR
Subjt:  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEFGAFQKLGDPTTKR

YP_009004069.1 photosystem II CP47 chlorophyll apoprotein [Cucumis hystrix]

1.9e-34

97.3

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Query:  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEFGAFQKLGDPTTKRV
        DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLF DVF GIDPDLDTQVEFGAFQKLGDPTTKRV
Subjt:  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEFGAFQKLGDPTTKRV

YP_009572969.1 PSII 47 kDa protein [Plantago ovata]

5.7e-34

97.26

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Query:  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEFGAFQKLGDPTTKR
        DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLF DVF GIDPDLDTQVEFGAFQKLGDPTTKR
Subjt:  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEFGAFQKLGDPTTKR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KVA2 ELMO domain-containing protein

2.9e-44

100

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Query:  MSGNYTPIHAHKDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEFGAFQKLGDPTTKRV
        MSGNYTPIHAHKDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEFGAFQKLGDPTTKRV
Subjt:  MSGNYTPIHAHKDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEFGAFQKLGDPTTKRV

A0A1X9Q1E5 Photosystem II CP47 reaction center protein

9.4e-35

97.3

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Query:  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEFGAFQKLGDPTTKRV
        DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLF DVF GIDPDLDTQVEFGAFQKLGDPTTKRV
Subjt:  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEFGAFQKLGDPTTKRV

A0A218KG68 Photosystem II CP47 reaction center protein

9.4e-35

97.3

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Query:  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEFGAFQKLGDPTTKRV
        DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLF DVF GIDPDLDTQVEFGAFQKLGDPTTKRV
Subjt:  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEFGAFQKLGDPTTKRV

A0A343UM58 Photosystem II CP47 reaction center protein

9.4e-35

97.3

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Query:  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEFGAFQKLGDPTTKRV
        DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLF DVF GIDPDLDTQVEFGAFQKLGDPTTKRV
Subjt:  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEFGAFQKLGDPTTKRV

W8E7S0 Photosystem II CP47 reaction center protein

9.4e-35

97.3

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Query:  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEFGAFQKLGDPTTKRV
        DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLF DVF GIDPDLDTQVEFGAFQKLGDPTTKRV
Subjt:  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEFGAFQKLGDPTTKRV

SwissProt top hits

e value

%identity

Alignment

B0Z4Y6 Photosystem II CP47 reaction center protein

1.7e-36

95.89

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Query:  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEFGAFQKLGDPTTKR
        DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLF DVF GIDPDLDTQVEFGAFQKLGDPTT+R
Subjt:  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEFGAFQKLGDPTTKR

B0Z570 Photosystem II CP47 reaction center protein

1.7e-36

95.89

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Query:  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEFGAFQKLGDPTTKR
        DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLF DVF GIDPDLDTQVEFGAFQKLGDPTT+R
Subjt:  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEFGAFQKLGDPTTKR

P19819 Photosystem II CP47 reaction center protein

1.7e-36

95.89

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Query:  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEFGAFQKLGDPTTKR
        DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLF DVF GIDPDLDTQVEFGAFQKLGDPTT+R
Subjt:  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEFGAFQKLGDPTTKR

Q2QD63 Photosystem II CP47 reaction center protein

2.6e-37

97.3

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Query:  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEFGAFQKLGDPTTKRV
        DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLF DVF GIDPDLDTQVEFGAFQKLGDPTTKRV
Subjt:  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEFGAFQKLGDPTTKRV

Q9MTJ7 Photosystem II CP47 reaction center protein

1.7e-36

95.89

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Query:  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEFGAFQKLGDPTTKR
        DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLF DVF GIDPDLDTQVEFGAFQKLGDPTT+R
Subjt:  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEFGAFQKLGDPTTKR

Arabidopsis top hits

e value

%identity

Alignment

ATCG00680.1 photosystem II reaction center protein B

2.0e-37

95.89

Show/hide

Query:  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEFGAFQKLGDPTTKR
        DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLF DVF GIDPDLD QVEFGAFQKLGDPTTKR
Subjt:  DRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEFGAFQKLGDPTTKR

Sequences

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CDS sequence

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ATGTCAGGCAACTATACACCAATTCATGCGCACAAAGATCGTGCTACTTTGAAATCCGATGGGGTTTTTCGTAGCAGTCCAAGGGGTTGGTTTACTTTTGGGCATGCTTC
CTTTGCTTTGCTCTTCTTCTTCGGACACATTTGGCATGGTGCGAGAACCTTGTTCGGAGATGTCTTTGTTGGGATTGACCCAGATTTGGACACTCAAGTAGAATTTGGGG
CATTCCAAAAACTTGGAGATCCAACTACAAAAAGAGTCTAG

mRNA sequence

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Protein sequence

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MSGNYTPIHAHKDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFGDVFVGIDPDLDTQVEFGAFQKLGDPTTKRV

CSPI05G21460 (gene) of Cucumber (PI 183967) v1 genome