; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI05G21830 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G21830
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionphotosystem II core complex proteins psbY, chloroplastic-like
Genome locationChr5:22448512..22449656
RNA-Seq ExpressionCSPI05G21830
SyntenyCSPI05G21830
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0045454 - cell redox homeostasis (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009534 - chloroplast thylakoid (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0030145 - manganese ion binding (molecular function)
InterPro domainsIPR009388 - Photosystem II PsbY
IPR038760 - Photosystem II PsbY, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN52335.2 hypothetical protein Csa_009403 [Cucumis sativus]7.0e-8799.44Show/hide
Query:  MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
        MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
Subjt:  MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL

Query:  QPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
        QPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRS+
Subjt:  QPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
XP_004135291.1 photosystem II core complex proteins psbY, chloroplastic [Cucumis sativus]3.1e-87100Show/hide
Query:  MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
        MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
Subjt:  MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL

Query:  QPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
        QPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
Subjt:  QPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
XP_008446112.1 PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumis melo]3.7e-8095Show/hide
Query:  MAATMATMAILNAKCFTPINKTP-LLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
        MAATMATMAILNAKCFTPINKTP LLPSKP TKPISLP PI TKPSLAGTAIAGAIFSTLSSGDAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
Subjt:  MAATMATMAILNAKCFTPINKTP-LLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI

Query:  LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
        LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEA +D RGQLLLIVVAPAIAWVL+NILQPALNQLNRMRSE
Subjt:  LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
XP_022998705.1 photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita maxima]9.2e-7187.85Show/hide
Query:  MAATMATMAILNAKCFTPINKT--PLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFN
        MAATMATMAILNAKCFTP N+T  PLLPSKP T+PISLP+P   K SLAG+AIAGAIFST S  DAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFN
Subjt:  MAATMATMAILNAKCFTPINKT--PLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFN

Query:  ILQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
        ILQPALNQINRMRTEKAVI GLGLGGLLASGLVGTPEAMAAEA +D RGQLLLIVVAPAI WVL+NILQPALNQLNRMRSE
Subjt:  ILQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
XP_038891337.1 photosystem II core complex proteins psbY, chloroplastic-like [Benincasa hispida]1.6e-7894.44Show/hide
Query:  MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLP-LPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
        MAATMATMAILNAKCFTP NKTPLLPSKP T+PISLP LP  TKPSLAGTAIAGAIFST SSGDAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
Subjt:  MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLP-LPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI

Query:  LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
        LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEA SDGRGQLLLIVVAPAIAWVL+NILQPALNQLNRMRSE
Subjt:  LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
TrEMBL top hitse value%identityAlignment
A0A0A0KTG2 Uncharacterized protein1.5e-87100Show/hide
Query:  MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
        MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
Subjt:  MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL

Query:  QPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
        QPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
Subjt:  QPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
A0A1S3BDT7 photosystem II core complex proteins psbY, chloroplastic-like1.8e-8095Show/hide
Query:  MAATMATMAILNAKCFTPINKTP-LLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
        MAATMATMAILNAKCFTPINKTP LLPSKP TKPISLP PI TKPSLAGTAIAGAIFSTLSSGDAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
Subjt:  MAATMATMAILNAKCFTPINKTP-LLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI

Query:  LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
        LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEA +D RGQLLLIVVAPAIAWVL+NILQPALNQLNRMRSE
Subjt:  LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
A0A5A7SY80 Photosystem II core complex proteins psbY1.8e-8095Show/hide
Query:  MAATMATMAILNAKCFTPINKTP-LLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
        MAATMATMAILNAKCFTPINKTP LLPSKP TKPISLP PI TKPSLAGTAIAGAIFSTLSSGDAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
Subjt:  MAATMATMAILNAKCFTPINKTP-LLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI

Query:  LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
        LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEA +D RGQLLLIVVAPAIAWVL+NILQPALNQLNRMRSE
Subjt:  LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
A0A6J1GXR1 photosystem II core complex proteins psbY, chloroplastic-like7.6e-7187.85Show/hide
Query:  MAATMATMAILNAKCFTPINKT--PLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFN
        MAATMATMAILNAKCFTP N+T  PLLPSKP T PISLP+P   K SLAG+AIAGAIFST S  DAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFN
Subjt:  MAATMATMAILNAKCFTPINKT--PLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFN

Query:  ILQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
        ILQPALNQINRMRTEKAVI GLGLGGLLASGLVGTPEAMAAEA +D RGQLLLIVVAPAI WVL+NILQPALNQLNRMRSE
Subjt:  ILQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
A0A6J1KD85 photosystem II core complex proteins psbY, chloroplastic-like4.4e-7187.85Show/hide
Query:  MAATMATMAILNAKCFTPINKT--PLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFN
        MAATMATMAILNAKCFTP N+T  PLLPSKP T+PISLP+P   K SLAG+AIAGAIFST S  DAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFN
Subjt:  MAATMATMAILNAKCFTPINKT--PLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFN

Query:  ILQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
        ILQPALNQINRMRTEKAVI GLGLGGLLASGLVGTPEAMAAEA +D RGQLLLIVVAPAI WVL+NILQPALNQLNRMRSE
Subjt:  ILQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
SwissProt top hitse value%identityAlignment
O49347 Photosystem II core complex proteins psbY, chloroplastic2.9e-4358.12Show/hide
Query:  MAATMATMAILNAKCFTPINKTPLLPSKPATKP-ISLPLPILTKPSLA--GTAIAGAIFSTLSSGDAALAAQQIADL----AEGDNRGLALLLPLIPAVA
        MAA MAT      KC +     P L ++  +KP ISLP P     SLA   TA+AGA+FS+LS  + ALA QQIA L    A  DNRGLALLLP++PA+A
Subjt:  MAATMATMAILNAKCFTPINKTPLLPSKPATKP-ISLPLPILTKPSLA--GTAIAGAIFSTLSSGDAALAAQQIADL----AEGDNRGLALLLPLIPAVA

Query:  WVLFNILQPALNQINRMRTEKAVIVGLGL-GGLLASGLVGTP-----EAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRS
        WVL+NILQPA+NQ+N+MR  K ++VGLG+ GGL ASGL+  P      A AA A SD RGQLLLIVV PA+ WVL+NILQPALNQ+N+MRS
Subjt:  WVLFNILQPALNQINRMRTEKAVIVGLGL-GGLLASGLVGTP-----EAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRS
P80470 Photosystem II core complex proteins psbY, chloroplastic2.7e-4962.81Show/hide
Query:  MAATMA-TMAILNAKCFT-PINKTPLLPSKPATKPISL--------PLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLA----EGDNRGLALLL
        MAATMA TMA+LN KC T   NKT     KP +KPISL         LP+   P +   AIAGA+F+TL S D A A QQ+AD+A      DNRGLALLL
Subjt:  MAATMA-TMAILNAKCFT-PINKTPLLPSKPATKPISL--------PLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLA----EGDNRGLALLL

Query:  PLIPAVAWVLFNILQPALNQINRMRTE-KAVIVGLGLGGLLASG-LVGTPEAMAAE----AGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
        P+IPA+ WVLFNILQPALNQIN+MR E KA IVGLGL GL  SG L+ TPEA AA      GSD RG LLL+VV PAI WVLFNILQPALNQLN+MRS+
Subjt:  PLIPAVAWVLFNILQPALNQINRMRTE-KAVIVGLGLGGLLASG-LVGTPEAMAAE----AGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
Arabidopsis top hitse value%identityAlignment
AT1G67740.1 photosystem II BY2.1e-4458.12Show/hide
Query:  MAATMATMAILNAKCFTPINKTPLLPSKPATKP-ISLPLPILTKPSLA--GTAIAGAIFSTLSSGDAALAAQQIADL----AEGDNRGLALLLPLIPAVA
        MAA MAT      KC +     P L ++  +KP ISLP P     SLA   TA+AGA+FS+LS  + ALA QQIA L    A  DNRGLALLLP++PA+A
Subjt:  MAATMATMAILNAKCFTPINKTPLLPSKPATKP-ISLPLPILTKPSLA--GTAIAGAIFSTLSSGDAALAAQQIADL----AEGDNRGLALLLPLIPAVA

Query:  WVLFNILQPALNQINRMRTEKAVIVGLGL-GGLLASGLVGTP-----EAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRS
        WVL+NILQPA+NQ+N+MR  K ++VGLG+ GGL ASGL+  P      A AA A SD RGQLLLIVV PA+ WVL+NILQPALNQ+N+MRS
Subjt:  WVLFNILQPALNQINRMRTEKAVIVGLGL-GGLLASGLVGTP-----EAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCAACAATGGCGACTATGGCTATCCTCAACGCCAAATGCTTCACCCCCATTAATAAAACCCCACTTCTCCCTTCAAAACCCGCCACCAAACCCATCTCCCTCCC
TCTCCCTATCCTAACCAAACCTTCCCTCGCCGGTACTGCCATCGCCGGAGCAATCTTCTCAACACTGAGCTCCGGAGACGCTGCTTTGGCTGCCCAACAGATCGCCGATC
TAGCGGAAGGCGACAACCGGGGACTGGCTCTTTTGCTGCCGCTCATCCCGGCGGTGGCGTGGGTTCTGTTCAACATTCTTCAGCCGGCGTTGAATCAGATAAATAGGATG
CGTACGGAGAAGGCGGTGATTGTTGGGTTGGGTCTGGGTGGGTTGCTGGCGTCGGGGCTTGTGGGGACTCCGGAGGCAATGGCGGCGGAGGCAGGGAGCGACGGGCGAGG
ACAGTTGCTGTTGATTGTGGTGGCGCCGGCGATTGCTTGGGTTTTGTTTAATATATTACAGCCGGCGTTGAACCAGCTGAATCGGATGAGATCGGAGTGA
mRNA sequenceShow/hide mRNA sequence
TAGTTATACTAGTTAGTATTTTTTATTTTAATTATCCCAAAACACATTAGTGAGAAATGAAGATTAAGTTAAATGTTACGTCAAAAGTGTTTGTTATATGGTGAATGAAA
ATTAGAATTAGAAGAAGATAATATGGATGAGAAAGGAATAGTGATGGCAACAAAATTTTGAGGCTCAAAATTTCCCAATCCCACCGTTTTAGATAAGAATACAATCCATT
CTCTCAATTCCATTGGCTCTCATTTCCCCAAAATCCTCTCTCAAATTTCCCAAAAACGCTCTTCACATCCCTAATTCCTATTCCCTACACACCAATTTCTTCACTCTCCT
TCAATGGCGGCAACAATGGCGACTATGGCTATCCTCAACGCCAAATGCTTCACCCCCATTAATAAAACCCCACTTCTCCCTTCAAAACCCGCCACCAAACCCATCTCCCT
CCCTCTCCCTATCCTAACCAAACCTTCCCTCGCCGGTACTGCCATCGCCGGAGCAATCTTCTCAACACTGAGCTCCGGAGACGCTGCTTTGGCTGCCCAACAGATCGCCG
ATCTAGCGGAAGGCGACAACCGGGGACTGGCTCTTTTGCTGCCGCTCATCCCGGCGGTGGCGTGGGTTCTGTTCAACATTCTTCAGCCGGCGTTGAATCAGATAAATAGG
ATGCGTACGGAGAAGGCGGTGATTGTTGGGTTGGGTCTGGGTGGGTTGCTGGCGTCGGGGCTTGTGGGGACTCCGGAGGCAATGGCGGCGGAGGCAGGGAGCGACGGGCG
AGGACAGTTGCTGTTGATTGTGGTGGCGCCGGCGATTGCTTGGGTTTTGTTTAATATATTACAGCCGGCGTTGAACCAGCTGAATCGGATGAGATCGGAGTGAAATGGTG
ATTAGATGATCCTTAAATTACTTGTAATTTTAAATGCAAATCTCTCTCTCTTATGCTTTATAAATGAAGCGTTGGAGTCTAAGCCCAAACTTGATTTCTTTTTGGGGTCT
TTTTTAGTGTTTATAATCAATATTCACCAACCTCAACTTCCAATATACTTTCATTATTCTTATTAATACTTTTAGATACCACTTTCGTCCAGTTCTATGCTTATTTTCGT
TCATTTTTATTACTTTCATCTGTTAATTTATGCATTTACTAGTTG
Protein sequenceShow/hide protein sequence
MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRM
RTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE