CuGenDBv2

Gene ID	CSPI05G22570
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	DNA-directed RNA polymerase subunit 10-like protein
Genome location	Chr5:22971250..22972258
RNA-Seq Expression	CSPI05G22570
Synteny	CSPI05G22570
Gene Ontology terms	GO:0006360 - transcription by RNA polymerase I (biological process) GO:0006366 - transcription by RNA polymerase II (biological process) GO:0042797 - tRNA transcription by RNA polymerase III (biological process) GO:0005665 - RNA polymerase II, core complex (cellular component) GO:0005666 - RNA polymerase III complex (cellular component) GO:0005736 - RNA polymerase I complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR000268 - DNA-directed RNA polymerase, subunit N/Rpb10 IPR020789 - RNA polymerases, subunit N, zinc binding site IPR023580 - RNA polymerase subunit RPB10

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004135479.1 DNA-directed RNA polymerase subunit 10-like protein [Cucumis sativus]

2.1e-34

100

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII
        MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII

XP_008446194.1 PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Cucumis melo]

1.4e-33

97.18

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII
        MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII

XP_022151052.1 DNA-directed RNA polymerase subunit 10-like protein [Momordica charantia]

5.2e-33

94.37

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII
        MIIPVRCFTCGKVIGNKWD+YL+LLQADYPEGEALD+LGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII

XP_027347186.1 DNA-directed RNA polymerase subunit 10-like protein [Abrus precatorius]

7.5e-32

94.2

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYNT+DKS+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE

XP_038893151.1 DNA-directed RNA polymerase subunit 10-like protein [Benincasa hispida]

6.1e-34

98.59

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII
        MIIPVRCFTCGKVIGNKWDTYL+LLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII

TrEMBL top hits

e value

%identity

Alignment

A0A067GUJ6 Uncharacterized protein

3.6e-32

94.2

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYNT+DKS+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE

A0A0A0KQ80 Uncharacterized protein

1.0e-34

100

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII
        MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII

A0A1S3BEG8 DNA-directed RNA polymerase subunit 10-like protein

6.6e-34

97.18

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII
        MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII

A0A5A7SYN0 DNA-directed RNA polymerase subunit 10-like protein

6.6e-34

97.18

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII
        MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII

A0A6J1DCG7 DNA-directed RNA polymerase subunit 10-like protein

2.5e-33

94.37

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII
        MIIPVRCFTCGKVIGNKWD+YL+LLQADYPEGEALD+LGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII

SwissProt top hits

e value

%identity

Alignment

Q32P78 DNA-directed RNA polymerases I, II, and III subunit RPABC5

9.8e-27

76.12

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDK
        MIIPVRCFTCGK++GNKW+ YL LLQA+Y EG+ALD LGL RYCCRRML+ HVDLIEKLLNY  ++K
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDK

Q39290 DNA-directed RNA polymerases I, II, and III subunit RPABC5

1.7e-31

86.96

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        MIIPVRCFTCGKVIGNKWD YLDLLQ DY EG+ALD L LVRYCCRRMLMTHVDLIEKLLNYNT++KS+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE

Q6QN04 DNA-directed RNA polymerases I, II, and III subunit RPABC5

9.8e-27

76.12

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDK
        MIIPVRCFTCGK++GNKW+ YL LLQA+Y EG+ALD LGL RYCCRRML+ HVDLIEKLLNY  ++K
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDK

Q8LFJ6 DNA-directed RNA polymerases II, IV and V subunit 10

3.9e-31

86.96

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        MIIPVRCFTCGKVIGNKWD YLDLLQ DY EG+ALD L LVRYCCRRMLMTHVDLIEKLLNYNT++KS+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE

Q9SYA6 DNA-directed RNA polymerase subunit 10-like protein

4.1e-33

89.86

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        MI+PVRCFTCGKVIGNKWDTYL+LLQADY EG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYNTM+KS+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE

Arabidopsis top hits

e value

%identity

Alignment

AT1G11475.1 RNA polymerases N / 8 kDa subunit

2.7e-32

86.96

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        MIIPVRCFTCGKVIGNKWD YLDLLQ DY EG+ALD L LVRYCCRRMLMTHVDLIEKLLNYNT++KS+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE

AT1G61700.1 RNA polymerases N / 8 kDa subunit

2.9e-34

89.86

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Query:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        MI+PVRCFTCGKVIGNKWDTYL+LLQADY EG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYNTM+KS+
Subjt:  MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE

Sequences

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CDS sequence

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ATGATCATTCCGGTGCGGTGCTTCACTTGCGGCAAGGTGATCGGTAACAAATGGGACACTTATCTTGACCTTCTACAAGCTGACTATCCAGAAGGGGAGGCATTGGATAT
GTTAGGGTTAGTACGGTACTGTTGCAGGAGAATGCTTATGACTCATGTGGATCTCATTGAGAAGCTCTTGAACTACAACACCATGGATAAGTCTGAAATCATCTAA

mRNA sequence

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TTAAATTAAAACACGATGAAGGATGGAAGTTAAGTTTAAAGAAATCAAATTGGAGAACAACCAAACAAATCAAAGAAGATGATCATTCCGGTGCGGTGCTTCACTTGCGG
CAAGGTGATCGGTAACAAATGGGACACTTATCTTGACCTTCTACAAGCTGACTATCCAGAAGGGGAGGCATTGGATATGTTAGGGTTAGTACGGTACTGTTGCAGGAGAA
TGCTTATGACTCATGTGGATCTCATTGAGAAGCTCTTGAACTACAACACCATGGATAAGTCTGAAATCATCTAAAGCCTAACTACGGGGAATTGCTTTGCCAACACAGTG
AATTCTGCAATGCATTGTTTAGATTTTGTAAAGAGTCTAAGTAAAGCTAATAAAGTCACTTCTTTCGAGAGTGAAATTGATTTAACTTTCCAAAATATTTTTATAGTAGT
AATTCTTCCAAGTTTTGGATGGAAATTTGATGTATAGAATATTGATGCGACAATAAGCTATAATGAAAATAAAGTAACTATACGTAGTGATTTTTTTTCGTTC

Protein sequence

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MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEII

CSPI05G22570 (gene) of Cucumber (PI 183967) v1 genome