; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI05G23570 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G23570
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptiontranscription factor PRE6-like
Genome locationChr5:23602619..23604473
RNA-Seq ExpressionCSPI05G23570
SyntenyCSPI05G23570
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135185.1 transcription factor PRE6 [Cucumis sativus]1.3e-39100Show/hide
Query:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
Subjt:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

XP_008446331.1 PREDICTED: transcription factor PRE6-like [Cucumis melo]2.9e-3998.95Show/hide
Query:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLS+LLASTDPESAQAAIIRSLLM
Subjt:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

XP_022151230.1 transcription factor PRE6-like [Momordica charantia]1.5e-3593.68Show/hide
Query:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS RSSRSRRS V SRNISD+QIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIRSLQREVDDLS+RLSELLASTDPESAQAAIIRSLLM
Subjt:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

XP_022968308.1 transcription factor PRE6-like [Cucurbita maxima]1.3e-3492.63Show/hide
Query:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS RSSRSRRS V S NISDEQIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIRSLQREV DLSDRLSELL STDPESAQAAIIRSLLM
Subjt:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

XP_038893351.1 transcription factor PRE6-like [Benincasa hispida]2.5e-3897.89Show/hide
Query:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MSGRSSRSRRSGV SRNISD+QIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
Subjt:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

TrEMBL top hitse value%identityAlignment
A0A0A0KQJ7 Transcription regulator6.3e-40100Show/hide
Query:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
Subjt:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

A0A1S3BFH5 transcription factor PRE6-like1.4e-3998.95Show/hide
Query:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLS+LLASTDPESAQAAIIRSLLM
Subjt:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

A0A6J1DAM4 transcription factor PRE6-like7.2e-3693.68Show/hide
Query:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS RSSRSRRS V SRNISD+QIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIRSLQREVDDLS+RLSELLASTDPESAQAAIIRSLLM
Subjt:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

A0A6J1G268 transcription factor PRE6-like8.0e-3592.63Show/hide
Query:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS RSSRSRRS V S NISDEQIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIRSLQREV DLSDRLSELL STDPESAQAAIIRSLLM
Subjt:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

A0A6J1HXN1 transcription factor PRE6-like6.1e-3592.63Show/hide
Query:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS RSSRSRRS V S NISDEQIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIRSLQREV DLSDRLSELL STDPESAQAAIIRSLLM
Subjt:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

SwissProt top hitse value%identityAlignment
B8APB5 Transcription factor ILI63.2e-2571.58Show/hide
Query:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS R SRSR+S  GS  I+DEQI+DL+SKLQ L+PE R  RS+ RV +S+VLQETCNYIRSL +EVDDLS+RLSELLA++D  SAQAAIIRSLLM
Subjt:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

Q0DUR2 Transcription factor ILI63.2e-2571.58Show/hide
Query:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS R SRSR+S  GS  I+DEQI+DL+SKLQ L+PE R  RS+ RV +S+VLQETCNYIRSL +EVDDLS+RLSELLA++D  SAQAAIIRSLLM
Subjt:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

Q8GW32 Transcription factor PRE63.4e-2777.42Show/hide
Query:  SGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL
        S RSSRSR+S  GS  ISD+QI+DL+SKLQ LIPE+R  R S +VSASKVLQETCNYIR+L REVDDLSDRLSELLASTD  SA+AAIIRSLL
Subjt:  SGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL

Q9CA64 Transcription factor PRE32.1e-2468.09Show/hide
Query:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL
        MSGR SRSR+S  G+  IS++QI DLI KLQQL+PE+R+ R S +VSA++VLQ+TCNYIR+L REVDDLS+RLSELLA++D  +AQAA+IRSLL
Subjt:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL

Q9LXG5 Transcription factor PRE22.1e-2467.78Show/hide
Query:  SSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL
        SSR  R    S  ISD+QI DLISKL+Q IPEIR  R S+ VSASKVLQETCNYIR+L +E DDLSDRL++LL S DP S QAA+IRSL+
Subjt:  SSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein2.4e-2877.42Show/hide
Query:  SGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL
        S RSSRSR+S  GS  ISD+QI+DL+SKLQ LIPE+R  R S +VSASKVLQETCNYIR+L REVDDLSDRLSELLASTD  SA+AAIIRSLL
Subjt:  SGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 11.5e-2568.09Show/hide
Query:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL
        MSGR SRSR+S  G+  IS++QI DLI KLQQL+PE+R+ R S +VSA++VLQ+TCNYIR+L REVDDLS+RLSELLA++D  +AQAA+IRSLL
Subjt:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein6.2e-2465.26Show/hide
Query:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS R  RSR++   SR ISD+Q+ DL+SKL+Q +PEI   R S +VSASKVLQETCNYIR L REVD+LSDRLS+LL S D +S +AA+IRSLLM
Subjt:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

AT3G47710.1 BANQUO 38.2e-2464.21Show/hide
Query:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS R SRSR++G     I+DEQI DL+ +L +L+PE+ N R S +VSAS+VLQETC+YIR+L +EVDDLS+RLS+LL STD  SAQAA+IRSLLM
Subjt:  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

AT5G15160.1 BANQUO 21.5e-2567.78Show/hide
Query:  SSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL
        SSR  R    S  ISD+QI DLISKL+Q IPEIR  R S+ VSASKVLQETCNYIR+L +E DDLSDRL++LL S DP S QAA+IRSL+
Subjt:  SSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGGGAGAAGCTCGCGTTCTCGGCGCTCGGGTGTTGGTTCCAGGAATATTTCTGACGAACAAATTGCTGATTTGATATCCAAATTACAACAGCTCATTCCTGAGAT
TCGCAACGGCCGTTCCTCCTCTAGGGTATCCGCTTCAAAGGTTCTACAAGAGACATGCAACTATATAAGAAGCTTACAGAGAGAGGTGGATGATTTAAGCGATCGATTAT
CAGAACTATTGGCATCAACAGATCCTGAAAGTGCTCAAGCTGCCATAATTAGAAGCTTACTTATGTAG
mRNA sequenceShow/hide mRNA sequence
CCCACATATATATTGCTTTCTATATATATTGTCTTTCTCCAACTAAAACATTATAGAGACCTTCTCCTTTTCATTTTGGGTTTCTCTTCAACTCTCTCCTTTCTAGCTTT
CTCAATTCCCCAATATCTTTACTTTACCCGAGTTTATTATTGATCTTTTTTCAAAAATAATAAAGGAGTGAGGGGAGGGGAGGGAATTATTATATCTGACAATTTTTTTA
AAATTTGAATTTGTTGAATTTTGAAAGAAACAAAAACAATGTCGGGGAGAAGCTCGCGTTCTCGGCGCTCGGGTGTTGGTTCCAGGAATATTTCTGACGAACAAATTGCT
GATTTGATATCCAAATTACAACAGCTCATTCCTGAGATTCGCAACGGCCGTTCCTCCTCTAGGGTATCCGCTTCAAAGGTTCTACAAGAGACATGCAACTATATAAGAAG
CTTACAGAGAGAGGTGGATGATTTAAGCGATCGATTATCAGAACTATTGGCATCAACAGATCCTGAAAGTGCTCAAGCTGCCATAATTAGAAGCTTACTTATGTAGTAAT
ATTAATCATCCAAATTCCCTGAGTTTAATTACCTTCTTCTATACACATAATTTGCTCTTCACCCAACCACAACCCCCTCCTACCCATCCATGCAATTAAATTAATATAAA
CATATATAAATTAAAGTCGTATAATAAAAGGGATATTGTGATCTCTAGGCTTTACTATAATTAATTACTCTCGTAGATAATATATATATATAGCTAAATTTTGTTGCTTA
ATGGTGATCAGAGAAGAAATTATGTGTAACGCATGAAGAGCTGGGCGAATATATTATATTTGTTCCCACAATATAATATCTTATAAGGTTGAGCTTTATTTTTATTTTAT
TCATATATTTATATGATTAAAAT
Protein sequenceShow/hide protein sequence
MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM