CuGenDBv2

Gene ID	CSPI05G23970
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	RNA-binding protein
Genome location	Chr5:23799009..23801412
RNA-Seq Expression	CSPI05G23970
Synteny	CSPI05G23970
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6601448.1 Galactoside 2-alpha-L-fucosyltransferase, partial [Cucurbita argyrosperma subsp. sororia]

2.1e-86

89.25

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Query:  MSFMKGDLLTKTRKLVKGLAKAEPVWLKAMEQAPPPSFPRVDGTIKTITLPEDVYVKKFFKKHPDSYYHDAIKFCGFNPPPARIFAWRVLELKEQGVNEE
        MSFMKGDLLT+TRKLVKGLAKAEP+WLKAMEQAPPP+FPR+DGTIKTITLPEDVYVKKFF+KHPDS Y DAIKFC F+PPPARIF  RVLELKEQGV+EE
Subjt:  MSFMKGDLLTKTRKLVKGLAKAEPVWLKAMEQAPPPSFPRVDGTIKTITLPEDVYVKKFFKKHPDSYYHDAIKFCGFNPPPARIFAWRVLELKEQGVNEE

Query:  EAMTVANMEYRAEKKMKKNAYSRLKQIARLQGKKPPRNPYPSAIKEIQAEERKFVRDRFFDPKIKEIAQRLKEERAAEMQERTGGS
        EAM VANMEYRAEKK KK AYSRLKQIARLQGKKPP NPYPSAIKEIQAEERKFVRDRFF+PKIKEIAQRLKEERAAEMQ+R  GS
Subjt:  EAMTVANMEYRAEKKMKKNAYSRLKQIARLQGKKPPRNPYPSAIKEIQAEERKFVRDRFFDPKIKEIAQRLKEERAAEMQERTGGS

KAG7032230.1 hypothetical protein SDJN02_06273 [Cucurbita argyrosperma subsp. argyrosperma]

6.2e-86

88.71

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Query:  MSFMKGDLLTKTRKLVKGLAKAEPVWLKAMEQAPPPSFPRVDGTIKTITLPEDVYVKKFFKKHPDSYYHDAIKFCGFNPPPARIFAWRVLELKEQGVNEE
        MSFMKGDLLT+TRKLVKGLAKAEP+WLKAMEQAPPP+FPR+DGTIKTITLPEDVYV+KFF+KHPDS Y DAIKFC F+PPPARIF  RVLELKEQGV+EE
Subjt:  MSFMKGDLLTKTRKLVKGLAKAEPVWLKAMEQAPPPSFPRVDGTIKTITLPEDVYVKKFFKKHPDSYYHDAIKFCGFNPPPARIFAWRVLELKEQGVNEE

Query:  EAMTVANMEYRAEKKMKKNAYSRLKQIARLQGKKPPRNPYPSAIKEIQAEERKFVRDRFFDPKIKEIAQRLKEERAAEMQERTGGS
        EAM VANMEYRAEKK KK AYSRLKQIARLQGKKPP NPYPSAIKEIQAEERKFVRDRFF+PKIKEIAQRLKEERAAEMQ+R  GS
Subjt:  EAMTVANMEYRAEKKMKKNAYSRLKQIARLQGKKPPRNPYPSAIKEIQAEERKFVRDRFFDPKIKEIAQRLKEERAAEMQERTGGS

XP_004135170.1 uncharacterized protein LOC101217717 [Cucumis sativus]

6.4e-99

99.47

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Query:  MSFMKGDLLTKTRKLVKGLAKAEPVWLKAMEQAPPPSFPRVDGTIKTITLPEDVYVKKFFKKHPDSYYHDAIKFCGFNPPPARIFAWRVLELKEQGVNEE
        MSFMKGDLLTKTRKLVKGLAKAEPVWLKAMEQAPPPSFPRVDGTIKTITLPEDVYVKKFFKKHPDSYYHDAIKFCGFNPPPARIFAWRVLELKEQGVNEE
Subjt:  MSFMKGDLLTKTRKLVKGLAKAEPVWLKAMEQAPPPSFPRVDGTIKTITLPEDVYVKKFFKKHPDSYYHDAIKFCGFNPPPARIFAWRVLELKEQGVNEE

Query:  EAMTVANMEYRAEKKMKKNAYSRLKQIARLQGKKPPRNPYPSAIKEIQAEERKFVRDRFFDPKIKEIAQRLKEERAAEMQERTGGSR
        EAMTVANMEYRAEKKMKKNAYSRLKQIARLQGKKPPRNPYPSAIKEIQAEERKFVRDRFFDPKIKEIAQRLKEERAAEMQERTGG R
Subjt:  EAMTVANMEYRAEKKMKKNAYSRLKQIARLQGKKPPRNPYPSAIKEIQAEERKFVRDRFFDPKIKEIAQRLKEERAAEMQERTGGSR

XP_022957544.1 uncharacterized protein LOC111458914 [Cucurbita moschata]

2.1e-86

89.25

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Query:  MSFMKGDLLTKTRKLVKGLAKAEPVWLKAMEQAPPPSFPRVDGTIKTITLPEDVYVKKFFKKHPDSYYHDAIKFCGFNPPPARIFAWRVLELKEQGVNEE
        MSFMKGDLLT+TRKLVKGLAKAEP+WLKAMEQAPPP+FPR+DGTIKTITLPEDVYVKKFF+KHPDS Y DAIKFC F+PPPARIF  RVLELKEQGV+EE
Subjt:  MSFMKGDLLTKTRKLVKGLAKAEPVWLKAMEQAPPPSFPRVDGTIKTITLPEDVYVKKFFKKHPDSYYHDAIKFCGFNPPPARIFAWRVLELKEQGVNEE

Query:  EAMTVANMEYRAEKKMKKNAYSRLKQIARLQGKKPPRNPYPSAIKEIQAEERKFVRDRFFDPKIKEIAQRLKEERAAEMQERTGGS
        EAM VANMEYRAEKK KK AYSRLKQIARLQGKKPP NPYPSAIKEIQAEERKFVRDRFF+PKIKEIAQRLKEERAAEMQ+R  GS
Subjt:  EAMTVANMEYRAEKKMKKNAYSRLKQIARLQGKKPPRNPYPSAIKEIQAEERKFVRDRFFDPKIKEIAQRLKEERAAEMQERTGGS

XP_038891818.1 uncharacterized protein LOC120081194 [Benincasa hispida]

1.4e-85

88.71

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Query:  MSFMKGDLLTKTRKLVKGLAKAEPVWLKAMEQAPPPSFPRVDGTIKTITLPEDVYVKKFFKKHPDSYYHDAIKFCGFNPPPARIFAWRVLELKEQGVNEE
        MSFMKGDLLTKTRKLVKGLAKAEP+WLKAMEQAPPP+FPRVDGT+KTI LPEDVYVKKFF+KHPDS Y DAIKFC F+PPPARIF  RVLELKEQGVNEE
Subjt:  MSFMKGDLLTKTRKLVKGLAKAEPVWLKAMEQAPPPSFPRVDGTIKTITLPEDVYVKKFFKKHPDSYYHDAIKFCGFNPPPARIFAWRVLELKEQGVNEE

Query:  EAMTVANMEYRAEKKMKKNAYSRLKQIARLQGKKPPRNPYPSAIKEIQAEERKFVRDRFFDPKIKEIAQRLKEERAAEMQERTGGS
        EAM +ANMEYRAEKK KK AYSRLKQIARLQGKKPP NPYPSAIKEIQAEER FVRDRFF+PKIKEIAQRLKEERAAEMQER   S
Subjt:  EAMTVANMEYRAEKKMKKNAYSRLKQIARLQGKKPPRNPYPSAIKEIQAEERKFVRDRFFDPKIKEIAQRLKEERAAEMQERTGGS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KQQ3 Uncharacterized protein

3.1e-99

99.47

Show/hide

Query:  MSFMKGDLLTKTRKLVKGLAKAEPVWLKAMEQAPPPSFPRVDGTIKTITLPEDVYVKKFFKKHPDSYYHDAIKFCGFNPPPARIFAWRVLELKEQGVNEE
        MSFMKGDLLTKTRKLVKGLAKAEPVWLKAMEQAPPPSFPRVDGTIKTITLPEDVYVKKFFKKHPDSYYHDAIKFCGFNPPPARIFAWRVLELKEQGVNEE
Subjt:  MSFMKGDLLTKTRKLVKGLAKAEPVWLKAMEQAPPPSFPRVDGTIKTITLPEDVYVKKFFKKHPDSYYHDAIKFCGFNPPPARIFAWRVLELKEQGVNEE

Query:  EAMTVANMEYRAEKKMKKNAYSRLKQIARLQGKKPPRNPYPSAIKEIQAEERKFVRDRFFDPKIKEIAQRLKEERAAEMQERTGGSR
        EAMTVANMEYRAEKKMKKNAYSRLKQIARLQGKKPPRNPYPSAIKEIQAEERKFVRDRFFDPKIKEIAQRLKEERAAEMQERTGG R
Subjt:  EAMTVANMEYRAEKKMKKNAYSRLKQIARLQGKKPPRNPYPSAIKEIQAEERKFVRDRFFDPKIKEIAQRLKEERAAEMQERTGGSR

A0A1S3BEG4 uncharacterized protein LOC103489146

5.6e-85

88.11

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Query:  MSFMKGDLLTKTRKLVKGLAKAEPVWLKAMEQAPPPSFPRVDGTIKTITLPEDVYVKKFFKKHPDSYYHDAIKFCGFNPPPARIFAWRVLELKEQGVNEE
        MSFMKGDLLTKTRKLVKGLAKAEPVWLKAMEQAPPP+FPRVDG ++ ITLPEDVYVKKFF+KHPDS YHDAIKF  FNP PARIFAWRVLELKEQGV+EE
Subjt:  MSFMKGDLLTKTRKLVKGLAKAEPVWLKAMEQAPPPSFPRVDGTIKTITLPEDVYVKKFFKKHPDSYYHDAIKFCGFNPPPARIFAWRVLELKEQGVNEE

Query:  EAMTVANMEYRAEKKMKKNAYSRLKQIARLQGKKPPRNPYPSAIKEIQAEERKFVRDRFFDPKIKEIAQRLKEERAAEMQERTGG
        EAM  ANMEYRAEKKMKK AYSRLKQIARLQGKKPP NP+PSAIK+IQAEERK+VRDRFF+PKIKEIAQRLKEE+AAEMQER  G
Subjt:  EAMTVANMEYRAEKKMKKNAYSRLKQIARLQGKKPPRNPYPSAIKEIQAEERKFVRDRFFDPKIKEIAQRLKEERAAEMQERTGG

A0A6J1DDQ7 uncharacterized protein LOC111019147

4.3e-85

88.65

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Query:  MSFMKGDLLTKTRKLVKGLAKAEPVWLKAMEQAPPPSFPRVDGTIKTITLPEDVYVKKFFKKHPDSYYHDAIKFCGFNPPPARIFAWRVLELKEQGVNEE
        MSFMKGDLL +TRKLVKGLAKAEPVWLKAMEQAPPP+FPRVDGTIKTI+LPEDVYVKKFF+KHPDS Y DAIKFC F+PPPARIF  RVLELKEQGV EE
Subjt:  MSFMKGDLLTKTRKLVKGLAKAEPVWLKAMEQAPPPSFPRVDGTIKTITLPEDVYVKKFFKKHPDSYYHDAIKFCGFNPPPARIFAWRVLELKEQGVNEE

Query:  EAMTVANMEYRAEKKMKKNAYSRLKQIARLQGKKPPRNPYPSAIKEIQAEERKFVRDRFFDPKIKEIAQRLKEERAAEMQERTGG
        EAM VANMEYRAEKK+KK AY+RLKQIARLQGKKPP NPYPSAIKEIQAEERKFVRDRFF+PKIKEIAQRLKEERAAEMQ+R  G
Subjt:  EAMTVANMEYRAEKKMKKNAYSRLKQIARLQGKKPPRNPYPSAIKEIQAEERKFVRDRFFDPKIKEIAQRLKEERAAEMQERTGG

A0A6J1GZF0 uncharacterized protein LOC111458914

1.0e-86

89.25

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Query:  MSFMKGDLLTKTRKLVKGLAKAEPVWLKAMEQAPPPSFPRVDGTIKTITLPEDVYVKKFFKKHPDSYYHDAIKFCGFNPPPARIFAWRVLELKEQGVNEE
        MSFMKGDLLT+TRKLVKGLAKAEP+WLKAMEQAPPP+FPR+DGTIKTITLPEDVYVKKFF+KHPDS Y DAIKFC F+PPPARIF  RVLELKEQGV+EE
Subjt:  MSFMKGDLLTKTRKLVKGLAKAEPVWLKAMEQAPPPSFPRVDGTIKTITLPEDVYVKKFFKKHPDSYYHDAIKFCGFNPPPARIFAWRVLELKEQGVNEE

Query:  EAMTVANMEYRAEKKMKKNAYSRLKQIARLQGKKPPRNPYPSAIKEIQAEERKFVRDRFFDPKIKEIAQRLKEERAAEMQERTGGS
        EAM VANMEYRAEKK KK AYSRLKQIARLQGKKPP NPYPSAIKEIQAEERKFVRDRFF+PKIKEIAQRLKEERAAEMQ+R  GS
Subjt:  EAMTVANMEYRAEKKMKKNAYSRLKQIARLQGKKPPRNPYPSAIKEIQAEERKFVRDRFFDPKIKEIAQRLKEERAAEMQERTGGS

A0A6J1KC52 uncharacterized protein LOC111491881

1.5e-85

87.63

Show/hide

Query:  MSFMKGDLLTKTRKLVKGLAKAEPVWLKAMEQAPPPSFPRVDGTIKTITLPEDVYVKKFFKKHPDSYYHDAIKFCGFNPPPARIFAWRVLELKEQGVNEE
        MSFMKGDLL++TRKLVKGLAKAEP+WLKAMEQAPPP+FPR+DG +KTITLPEDVYVKKFF+KHPDS Y DAIKFC F+PPPARIF  RVLELKEQGV+EE
Subjt:  MSFMKGDLLTKTRKLVKGLAKAEPVWLKAMEQAPPPSFPRVDGTIKTITLPEDVYVKKFFKKHPDSYYHDAIKFCGFNPPPARIFAWRVLELKEQGVNEE

Query:  EAMTVANMEYRAEKKMKKNAYSRLKQIARLQGKKPPRNPYPSAIKEIQAEERKFVRDRFFDPKIKEIAQRLKEERAAEMQERTGGS
        EAM VANMEYRAEKK KK AYSRLKQIARLQGKKPP NPYPSAIKEIQAEERKFVRDRFF+PKIKEIAQRLKEERAAEMQ+R  GS
Subjt:  EAMTVANMEYRAEKKMKKNAYSRLKQIARLQGKKPPRNPYPSAIKEIQAEERKFVRDRFFDPKIKEIAQRLKEERAAEMQERTGGS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G26750.1 unknown protein

1.5e-50

53.76

Show/hide

Query:  MSFMKGDLLTKTRKLVKGLAKAEPVWLKAMEQAPPPSFPRVDGTIKTITLPEDVYVKKFFKKHPDSYYHDAIKFCGFNPPPARIFAWRVLELKEQGVNEE
        MS+MKGDLL+KTR+LV GLA  EPVWLKAME +PPP FPR +G I+ I LPED YV+KF  KHP +   D  K   F P  AR++  RVLELKE G++E 
Subjt:  MSFMKGDLLTKTRKLVKGLAKAEPVWLKAMEQAPPPSFPRVDGTIKTITLPEDVYVKKFFKKHPDSYYHDAIKFCGFNPPPARIFAWRVLELKEQGVNEE

Query:  EAMTVANMEYRAEKKMKKNAYSRLKQIARLQGKKPPRNPYPSAIKEIQAEERKFVRDRFFDPKIKEIAQRLKEERAAEMQERTGGS
        +AM+VANMEY +E+K  K AY RLK++A +Q K PP  PYPSA K +  + +   +DRF  P ++ +  +LK E+   +Q+RTGGS
Subjt:  EAMTVANMEYRAEKKMKKNAYSRLKQIARLQGKKPPRNPYPSAIKEIQAEERKFVRDRFFDPKIKEIAQRLKEERAAEMQERTGGS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCCTTCATGAAAGGAGACTTGCTAACTAAGACTAGAAAGCTCGTCAAGGGCTTGGCCAAAGCAGAACCTGTTTGGCTCAAAGCCATGGAGCAGGCGCCACCTCCTTC
ATTTCCCCGAGTAGATGGAACAATTAAGACAATCACTCTTCCTGAGGATGTATATGTAAAAAAGTTCTTCAAGAAACATCCAGACTCATATTACCATGATGCCATCAAGT
TCTGTGGTTTTAATCCTCCTCCAGCCCGAATATTTGCCTGGCGAGTGCTTGAACTGAAGGAACAAGGTGTCAATGAGGAGGAGGCCATGACAGTAGCCAACATGGAATAC
CGGGCAGAGAAAAAGATGAAAAAGAATGCGTACTCTCGCTTGAAGCAAATTGCACGTCTTCAAGGGAAGAAACCTCCTCGTAACCCTTATCCAAGTGCTATAAAGGAGAT
ACAAGCCGAGGAAAGGAAATTCGTCCGGGACCGTTTCTTCGATCCCAAGATTAAAGAGATTGCACAAAGGTTGAAGGAGGAGAGAGCAGCTGAAATGCAGGAAAGAACGG
GAGGCAGCCGGTGA

mRNA sequence

Show/hide mRNA sequence

GAAGAAATTAGCTGAAGGATCTCTCCCTAGTTTCATCTTCATCGTATCTTCTGATTATTGGATTTAATCACAATCCAAGAAGGAGGGAGCCATGTCCTTCATGAAAGGAG
ACTTGCTAACTAAGACTAGAAAGCTCGTCAAGGGCTTGGCCAAAGCAGAACCTGTTTGGCTCAAAGCCATGGAGCAGGCGCCACCTCCTTCATTTCCCCGAGTAGATGGA
ACAATTAAGACAATCACTCTTCCTGAGGATGTATATGTAAAAAAGTTCTTCAAGAAACATCCAGACTCATATTACCATGATGCCATCAAGTTCTGTGGTTTTAATCCTCC
TCCAGCCCGAATATTTGCCTGGCGAGTGCTTGAACTGAAGGAACAAGGTGTCAATGAGGAGGAGGCCATGACAGTAGCCAACATGGAATACCGGGCAGAGAAAAAGATGA
AAAAGAATGCGTACTCTCGCTTGAAGCAAATTGCACGTCTTCAAGGGAAGAAACCTCCTCGTAACCCTTATCCAAGTGCTATAAAGGAGATACAAGCCGAGGAAAGGAAA
TTCGTCCGGGACCGTTTCTTCGATCCCAAGATTAAAGAGATTGCACAAAGGTTGAAGGAGGAGAGAGCAGCTGAAATGCAGGAAAGAACGGGAGGCAGCCGGTGATGGAA
TATTCCATTCTCCCATCTCTGCTTCTGGAAACTGGCTTTTGCAATAATTTTGACAGTTCAGTAATTGAGAATATTTTTAGATTCAAGCGAACACCATATCTGAAGCATTA
GTTCAAGAACGTTTAAAAGATTTTTCTTTTGATGTTATTCAATTATTCGATGGCTGACCCTCTCAGAAGGTGGCAATGCCAATGCGCACCTTGATAAATGTTCGATCAAC
TTTTAATCATATTGATCCAATTCAATATTCATCAGTTTTTTTCTATATTACATTTTTTTAACATTGGAACATATTCAATATAGAGATAATTGTATAA

Protein sequence

Show/hide protein sequence

MSFMKGDLLTKTRKLVKGLAKAEPVWLKAMEQAPPPSFPRVDGTIKTITLPEDVYVKKFFKKHPDSYYHDAIKFCGFNPPPARIFAWRVLELKEQGVNEEEAMTVANMEY
RAEKKMKKNAYSRLKQIARLQGKKPPRNPYPSAIKEIQAEERKFVRDRFFDPKIKEIAQRLKEERAAEMQERTGGSR

CSPI05G23970 (gene) of Cucumber (PI 183967) v1 genome