CuGenDBv2

Gene ID	CSPI05G23990
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	50S ribosomal protein L32, chloroplastic
Genome location	Chr5:23806722..23808871
RNA-Seq Expression	CSPI05G23990
Synteny	CSPI05G23990
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR002677 - Ribosomal protein L32p IPR011332 - Zinc-binding ribosomal protein

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004135164.1 uncharacterized protein LOC101216290 [Cucumis sativus]

6.4e-72

99.27

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Query:  MALRIMRALEGQMGSMLGLKAMAYSLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTNNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK
        MALRIMRALEGQMGSMLGLKAMAY LPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTNNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK
Subjt:  MALRIMRALEGQMGSMLGLKAMAYSLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTNNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK

Query:  ALKPIPVIVRCKACGKVKLPHYYCCSGRPGDQDNSAT
        ALKPIPVIVRCKACGKVKLPHYYCCSGRPGDQDNSAT
Subjt:  ALKPIPVIVRCKACGKVKLPHYYCCSGRPGDQDNSAT

XP_008446396.1 PREDICTED: uncharacterized protein LOC103489153 [Cucumis melo]

1.4e-63

90.51

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Query:  MALRIMRALEGQMGSMLGLKAMAYSLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTNNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK
        MALRIMRALEGQ GSMLGLKAMAY LPHSS   GVMGPKDSPPPLVLPEFNQE D+D+ NNCSIVGFGFPSL FSGSMELMAVPKKKVSPHKRRIRNAPK
Subjt:  MALRIMRALEGQMGSMLGLKAMAYSLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTNNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK

Query:  ALKPIPVIVRCKACGKVKLPHYYCCSGRPGDQDNSAT
        ALKPIPVI+RCK CGKVKLPHYYCCSGRPG+QDNSAT
Subjt:  ALKPIPVIVRCKACGKVKLPHYYCCSGRPGDQDNSAT

XP_022968104.1 uncharacterized protein LOC111467436 [Cucurbita maxima]

3.4e-57

83.09

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Query:  MALRIMRALEGQMGSMLGLKAMAYSLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTNNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK
        MALRI+RA+EGQ GSM GLKAMA  LPHSSPISG+M  KDS PPLVLPEFN E D D  NNCSIVGFGFPSLSFSGSMELMAVPK+KVSPHKR IRN PK
Subjt:  MALRIMRALEGQMGSMLGLKAMAYSLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTNNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK

Query:  ALKPIPVIVRCKACGKVKLPHYYCCSGRPGDQDNSA
        ALKPIPVI+RCK+CGKVKLPH+YCCSGR G+QDNSA
Subjt:  ALKPIPVIVRCKACGKVKLPHYYCCSGRPGDQDNSA

XP_023541204.1 uncharacterized protein LOC111801437 [Cucurbita pepo subsp. pepo]

9.9e-57

81.62

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Query:  MALRIMRALEGQMGSMLGLKAMAYSLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTNNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK
        MALRI+RA+EGQ GSM GLKAM   LPHSSPISG+M  KDS PPLVLPEFN E D D+ NNCSIVGFGFPSLSFSGSMELMAVPK+K SPHKR IRN PK
Subjt:  MALRIMRALEGQMGSMLGLKAMAYSLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTNNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK

Query:  ALKPIPVIVRCKACGKVKLPHYYCCSGRPGDQDNSA
        ALKPIPVI+RCK+CGKVKLPH+YCCSGR G+QDNSA
Subjt:  ALKPIPVIVRCKACGKVKLPHYYCCSGRPGDQDNSA

XP_038891873.1 uncharacterized protein LOC120081238 [Benincasa hispida]

1.7e-56

82.35

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Query:  MALRIMRALEGQMGSMLGLKAMAYSLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTNNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK
        MALRI+RALE Q GSMLGLK MA +LPHSSPISG++  KDS PPLVLPEFNQE D D+ NNCSI+G GFP+LSFSGSMELMAVPKKKVSP+KR IRN PK
Subjt:  MALRIMRALEGQMGSMLGLKAMAYSLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTNNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK

Query:  ALKPIPVIVRCKACGKVKLPHYYCCSGRPGDQDNSA
        ALKPIPVIVRCK+CGKVKLPHYYCCSGR G+QDNSA
Subjt:  ALKPIPVIVRCKACGKVKLPHYYCCSGRPGDQDNSA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KQP7 50S ribosomal protein L32, chloroplastic

3.1e-72

99.27

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Query:  MALRIMRALEGQMGSMLGLKAMAYSLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTNNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK
        MALRIMRALEGQMGSMLGLKAMAY LPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTNNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK
Subjt:  MALRIMRALEGQMGSMLGLKAMAYSLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTNNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK

Query:  ALKPIPVIVRCKACGKVKLPHYYCCSGRPGDQDNSAT
        ALKPIPVIVRCKACGKVKLPHYYCCSGRPGDQDNSAT
Subjt:  ALKPIPVIVRCKACGKVKLPHYYCCSGRPGDQDNSAT

A0A1S3BEG9 50S ribosomal protein L32, chloroplastic

6.9e-64

90.51

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Query:  MALRIMRALEGQMGSMLGLKAMAYSLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTNNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK
        MALRIMRALEGQ GSMLGLKAMAY LPHSS   GVMGPKDSPPPLVLPEFNQE D+D+ NNCSIVGFGFPSL FSGSMELMAVPKKKVSPHKRRIRNAPK
Subjt:  MALRIMRALEGQMGSMLGLKAMAYSLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTNNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK

Query:  ALKPIPVIVRCKACGKVKLPHYYCCSGRPGDQDNSAT
        ALKPIPVI+RCK CGKVKLPHYYCCSGRPG+QDNSAT
Subjt:  ALKPIPVIVRCKACGKVKLPHYYCCSGRPGDQDNSAT

A0A5A7SYB6 50S ribosomal protein L32, chloroplastic

6.9e-64

90.51

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Query:  MALRIMRALEGQMGSMLGLKAMAYSLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTNNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK
        MALRIMRALEGQ GSMLGLKAMAY LPHSS   GVMGPKDSPPPLVLPEFNQE D+D+ NNCSIVGFGFPSL FSGSMELMAVPKKKVSPHKRRIRNAPK
Subjt:  MALRIMRALEGQMGSMLGLKAMAYSLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTNNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK

Query:  ALKPIPVIVRCKACGKVKLPHYYCCSGRPGDQDNSAT
        ALKPIPVI+RCK CGKVKLPHYYCCSGRPG+QDNSAT
Subjt:  ALKPIPVIVRCKACGKVKLPHYYCCSGRPGDQDNSAT

A0A6J1G1I2 50S ribosomal protein L32, chloroplastic

5.3e-56

80.88

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Query:  MALRIMRALEGQMGSMLGLKAMAYSLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTNNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK
        MALRI+RA+EGQ GSM GLKAMA  LPHSSPI+G++  KDS PPLVLPEFN E D D  NNCSIVGFGFPSLSFSGSMELMAVPK+K SPHKR IRN PK
Subjt:  MALRIMRALEGQMGSMLGLKAMAYSLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTNNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK

Query:  ALKPIPVIVRCKACGKVKLPHYYCCSGRPGDQDNSA
        ALKPIPVI+RCK+CGKVKLPH+YCCSGR G+QDNSA
Subjt:  ALKPIPVIVRCKACGKVKLPHYYCCSGRPGDQDNSA

A0A6J1HYN6 50S ribosomal protein L32, chloroplastic

1.6e-57

83.09

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Query:  MALRIMRALEGQMGSMLGLKAMAYSLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTNNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK
        MALRI+RA+EGQ GSM GLKAMA  LPHSSPISG+M  KDS PPLVLPEFN E D D  NNCSIVGFGFPSLSFSGSMELMAVPK+KVSPHKR IRN PK
Subjt:  MALRIMRALEGQMGSMLGLKAMAYSLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTNNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPK

Query:  ALKPIPVIVRCKACGKVKLPHYYCCSGRPGDQDNSA
        ALKPIPVI+RCK+CGKVKLPH+YCCSGR G+QDNSA
Subjt:  ALKPIPVIVRCKACGKVKLPHYYCCSGRPGDQDNSA

SwissProt top hits

e value

%identity

Alignment

Q2N923 50S ribosomal protein L32

7.7e-04

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Query:  MAVPKKKVSPHKRRIRNAPKALKPIPVIVRCKACGKVKLPHYYC
        MAVPK+KVSPH+R  R A  +LK +     C  CG++K PH  C
Subjt:  MAVPKKKVSPHKRRIRNAPKALKPIPVIVRCKACGKVKLPHYYC

Arabidopsis top hits

e value

%identity

Alignment

AT1G26740.1 Ribosomal L32p protein family

8.4e-30

50.76

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Query:  MALRIMRALEGQMGS--MLGLKAMAYSLPHSSPISGVMGPKDSPPPLVLPEFNQEYD---DDKTNNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRI
        MALR+       + S  +L  +++++     SP++G      S PPLVLPEF+Q      ++K+      GFG PS +F+GSMELMAVPKKK+S HKR I
Subjt:  MALRIMRALEGQMGS--MLGLKAMAYSLPHSSPISGVMGPKDSPPPLVLPEFNQEYD---DDKTNNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRI

Query:  RNAPKALKPIPVIVRCKACGKVKLPHYYCCSG
        RN PKALKP+PVI+RC++CG+VKLPH++CCSG
Subjt:  RNAPKALKPIPVIVRCKACGKVKLPHYYCCSG

AT1G69485.1 Ribosomal L32p protein family

2.1e-20

70.49

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Query:  MELMAVPKKKVSPHKRRIRNAPKALKPIPVIVRCKACGKVKLPHYYCCSGR---PGDQDNS
        MELMAVPKKK+S HKR IRN PKA KP PVI+RC++CG+VKLPH+YCCSG    P +Q NS
Subjt:  MELMAVPKKKVSPHKRRIRNAPKALKPIPVIVRCKACGKVKLPHYYCCSGR---PGDQDNS

Sequences

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CDS sequence

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ATGGCGTTGAGGATTATGAGGGCGCTCGAGGGTCAGATGGGTTCAATGCTAGGGCTTAAAGCGATGGCTTACAGTTTACCCCATTCTTCGCCGATATCTGGGGTAATGGG
CCCTAAGGATTCCCCGCCCCCGCTTGTTCTTCCTGAGTTCAACCAGGAATATGATGATGATAAAACCAACAACTGCAGTATTGTGGGATTTGGTTTCCCTAGCTTATCTT
TTTCCGGGTCTATGGAGCTCATGGCTGTTCCTAAGAAGAAGGTTTCTCCACATAAAAGGCGCATAAGAAATGCTCCAAAGGCTCTAAAACCTATTCCAGTTATAGTTCGA
TGCAAGGCTTGTGGTAAAGTGAAGCTGCCTCACTACTATTGTTGCAGTGGAAGACCGGGGGATCAGGACAATTCAGCCACATGA

mRNA sequence

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GCTAATTCCCAAACCCCGTCGTCTTCTCAGTCTGATTTCCACCGCCGGTATACTGAAATCAGCATTGGCACTTGGATTTGCTAGCAGCTATGGCGTTGAGGATTATGAGG
GCGCTCGAGGGTCAGATGGGTTCAATGCTAGGGCTTAAAGCGATGGCTTACAGTTTACCCCATTCTTCGCCGATATCTGGGGTAATGGGCCCTAAGGATTCCCCGCCCCC
GCTTGTTCTTCCTGAGTTCAACCAGGAATATGATGATGATAAAACCAACAACTGCAGTATTGTGGGATTTGGTTTCCCTAGCTTATCTTTTTCCGGGTCTATGGAGCTCA
TGGCTGTTCCTAAGAAGAAGGTTTCTCCACATAAAAGGCGCATAAGAAATGCTCCAAAGGCTCTAAAACCTATTCCAGTTATAGTTCGATGCAAGGCTTGTGGTAAAGTG
AAGCTGCCTCACTACTATTGTTGCAGTGGAAGACCGGGGGATCAGGACAATTCAGCCACATGAGACTATGGAGAGTAAAAAGTGCAGGCTGAAAGCAATGTCTTCAGTTA
TAGAATCGTCCCCATACCTGGGAGCTATAGTTTCCTTTTGAGAATTCTTCTTTATTAGATTCTTGAAGTTTTGGTTCTTCTGCTCATTGTATGACAGATTGTTCGATTTC
AACATGTTATAACCATTAACTTGCTGTTGAGCCATATCCTTGCTTTGTGCTATCCGGTAAACTTCAATTCTTCCAGGTCTGAAATGAAATGCGGACTCTTTTA

Protein sequence

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MALRIMRALEGQMGSMLGLKAMAYSLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTNNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPKALKPIPVIVR
CKACGKVKLPHYYCCSGRPGDQDNSAT

CSPI05G23990 (gene) of Cucumber (PI 183967) v1 genome