CuGenDBv2

Gene ID	CSPI05G24840
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Protein IDA-LIKE
Genome location	Chr5:24323497..24324059
RNA-Seq Expression	CSPI05G24840
Synteny	CSPI05G24840
Gene Ontology terms	GO:0010227 - floral organ abscission (biological process) GO:0005615 - extracellular space (cellular component) GO:0016020 - membrane (cellular component)
InterPro domains	IPR039639 - Protein IDA-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0034518.1 putative Membrane lipoprotein [Cucumis melo var. makuwa]

1.4e-24

72.38

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Query:  MPSSSS---------------QTSIPIFILLLLLLLLLSGLSSATRPGKTMEFTEMNPDMSNS-YK-TAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVD
        MPSSSS               Q SIPIFI   LLLLLLSG SSATRPG TMEF    PDMSNS YK TAFRY GQTF FLPKGVPIPPSGPSDRHNSVVD
Subjt:  MPSSSS---------------QTSIPIFILLLLLLLLLSGLSSATRPGKTMEFTEMNPDMSNS-YK-TAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVD

Query:  SLPPN
        SLPPN
Subjt:  SLPPN

KAG6601330.1 Protein IDA, partial [Cucurbita argyrosperma subsp. sororia]

3.9e-22

68.97

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Query:  SSSSQTSIPIFILLLLLLLLLSGLSSATRPGKTMEFTEMNPDMSN-SYKTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLPPN
        SSSS +S  +  + +LLLLL+SG  SATRPGKTM   E+ PD+SN +YKT FRY GQTFS+LP+GVPIPPSGPSDRHNS+VDSLPP+
Subjt:  SSSSQTSIPIFILLLLLLLLLSGLSSATRPGKTMEFTEMNPDMSN-SYKTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLPPN

KAG7032113.1 Protein IDA, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.5e-21

67.42

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Query:  MPSSSSQTSIPIFILLLLLLLLLSGLSSATRPGKTMEFTEMNPDMSN-SYKTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLPPN
        M SSSS +S  +  + +LLLLL+SG  SATRPGKTM   E+ PD+ N +YKT FRY GQTFS+LP+GVPIPPSGPSDRHNS+VDSLPP+
Subjt:  MPSSSSQTSIPIFILLLLLLLLLSGLSSATRPGKTMEFTEMNPDMSN-SYKTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLPPN

KGN52035.1 hypothetical protein Csa_008746 [Cucumis sativus]

2.3e-38

98.86

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Query:  MPSSSSQTSIPIFILLLLLLLLLSGLSSATRPGKTMEFTEMNPDMSNSYKTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLPPN
        MPSSSSQTSIPIFI LLLLLLLLSGLSSATRPGKTMEFTEMNPDMSNSYKTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLPPN
Subjt:  MPSSSSQTSIPIFILLLLLLLLLSGLSSATRPGKTMEFTEMNPDMSNSYKTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLPPN

TYK09072.1 putative Membrane lipoprotein [Cucumis melo var. makuwa]

1.9e-24

80.43

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Query:  SSSS----QTSIPIFILLLLLLLLLSGLSSATRPGKTMEFTEMNPDMSNS-YK-TAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLPPN
        SSSS    Q SIPIFI   LLLLLLSG SSATRPG TMEF    PDMSNS YK TAFRY GQTF FLPKGVPIPPSGPSDRHNSVVDSLPPN
Subjt:  SSSS----QTSIPIFILLLLLLLLLSGLSSATRPGKTMEFTEMNPDMSNS-YK-TAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLPPN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KR07 Uncharacterized protein

1.1e-38

98.86

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Query:  MPSSSSQTSIPIFILLLLLLLLLSGLSSATRPGKTMEFTEMNPDMSNSYKTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLPPN
        MPSSSSQTSIPIFI LLLLLLLLSGLSSATRPGKTMEFTEMNPDMSNSYKTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLPPN
Subjt:  MPSSSSQTSIPIFILLLLLLLLLSGLSSATRPGKTMEFTEMNPDMSNSYKTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLPPN

A0A5A7SV51 Putative Membrane lipoprotein

6.9e-25

72.38

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Query:  MPSSSS---------------QTSIPIFILLLLLLLLLSGLSSATRPGKTMEFTEMNPDMSNS-YK-TAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVD
        MPSSSS               Q SIPIFI   LLLLLLSG SSATRPG TMEF    PDMSNS YK TAFRY GQTF FLPKGVPIPPSGPSDRHNSVVD
Subjt:  MPSSSS---------------QTSIPIFILLLLLLLLLSGLSSATRPGKTMEFTEMNPDMSNS-YK-TAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVD

Query:  SLPPN
        SLPPN
Subjt:  SLPPN

A0A5D3CCP4 Putative Membrane lipoprotein

9.0e-25

80.43

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Query:  SSSS----QTSIPIFILLLLLLLLLSGLSSATRPGKTMEFTEMNPDMSNS-YK-TAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLPPN
        SSSS    Q SIPIFI   LLLLLLSG SSATRPG TMEF    PDMSNS YK TAFRY GQTF FLPKGVPIPPSGPSDRHNSVVDSLPPN
Subjt:  SSSS----QTSIPIFILLLLLLLLLSGLSSATRPGKTMEFTEMNPDMSNS-YK-TAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLPPN

A0A803RAE6 Uncharacterized protein

2.3e-12

52.22

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Query:  SSSSQTSIPIFILLLLLLLLLSGLSSATRPGKTMEF-----TEMNPD---MSNSYKTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDS
        SSSS     IF++ +L++ L SG SSATRPGKT        TE   D   +     TAFR+ GQTF+F PKG PIPPSGPS RHNSV ++
Subjt:  SSSSQTSIPIFILLLLLLLLLSGLSSATRPGKTMEF-----TEMNPD---MSNSYKTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDS

F6HF28 Uncharacterized protein

7.9e-13

48.51

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Query:  PSSSSQTSIPIF------ILLLLLLLLLSGLSSATRPGKTM--------EFTEMNPDMSNSYKTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLPP
        PSSSS +  P        I L+ +  L+ G  +ATRPG+ M        E   MNP   + +KT+F+ GGQ F+F PKGVPIPPSGPS RHNS VDS P 
Subjt:  PSSSSQTSIPIF------ILLLLLLLLLSGLSSATRPGKTM--------EFTEMNPDMSNSYKTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLPP

Query:  N
        N
Subjt:  N

SwissProt top hits

e value

%identity

Alignment

Q8LAD7 Protein IDA

1.4e-06

42.67

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Query:  IFILLLLLLLLLSGLSSATRPGKTMEFTEMNPDMSNSYKTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLP
        + +  +L L   S   +A R G TME       M  + K         F +LPKGVPIPPS PS RHNS V+SLP
Subjt:  IFILLLLLLLLLSGLSSATRPGKTMEFTEMNPDMSNSYKTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLP

Arabidopsis top hits

e value

%identity

Alignment

AT1G68765.1 Putative membrane lipoprotein

9.9e-08

42.67

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Query:  IFILLLLLLLLLSGLSSATRPGKTMEFTEMNPDMSNSYKTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLP
        + +  +L L   S   +A R G TME       M  + K         F +LPKGVPIPPS PS RHNS V+SLP
Subjt:  IFILLLLLLLLLSGLSSATRPGKTMEFTEMNPDMSNSYKTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLP

AT3G25655.1 inflorescence deficient in abscission (IDA)-like 1

2.3e-04

36.36

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Query:  IFILLLLLLLLLSGLSSATR---PGKTMEFTEMNPDMSNSYKTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSL
        +F+ L ++ LL+ G  +AT    P K  E   +           F + G+ F    K V +PPSGPS RHNSVV++L
Subjt:  IFILLLLLLLLLSGLSSATR---PGKTMEFTEMNPDMSNSYKTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCCTTCCTCTTCCTCCCAAACCTCCATACCCATTTTCATCCTCCTCCTCCTCCTCCTCCTCCTTCTCTCCGGGCTTTCCTCCGCAACTCGACCGGGTAAGACCATGGA
GTTTACGGAGATGAATCCCGACATGTCGAATTCTTACAAGACTGCCTTCCGATACGGTGGTCAGACCTTCAGCTTCCTCCCCAAAGGCGTTCCCATTCCTCCTTCCGGCC
CTTCCGACCGCCACAACTCCGTAGTCGACTCTCTTCCTCCCAATTAA

mRNA sequence

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AATTCCCCCATGCAATTAATTCCTTCATAAACCACAATGCCTTCCTCTTCCTCCCAAACCTCCATACCCATTTTCATCCTCCTCCTCCTCCTCCTCCTCCTTCTCTCCGG
GCTTTCCTCCGCAACTCGACCGGGTAAGACCATGGAGTTTACGGAGATGAATCCCGACATGTCGAATTCTTACAAGACTGCCTTCCGATACGGTGGTCAGACCTTCAGCT
TCCTCCCCAAAGGCGTTCCCATTCCTCCTTCCGGCCCTTCCGACCGCCACAACTCCGTAGTCGACTCTCTTCCTCCCAATTAAATTCGATTCATATATACGATGGGTATC
ATTTTTATTTTCTTCTTCTCATTTATATATACACTGTATAGAAAGAAAGAAAAGAAAAACAACAATCAGTCAATTTTCTGACACACATATTGTAATGTATTAATTATTTT
CACCCAATGAAATTAATCTTTGCTTGTTTTAATTTCTCAAGTGTGTGTTTGTGTTGAGGAAGTTACGAGTGGCATGAAAGGAAAATTTGGTAGTGTTAGGAAATTTTTTT
AAAAAAAAATGTA

Protein sequence

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MPSSSSQTSIPIFILLLLLLLLLSGLSSATRPGKTMEFTEMNPDMSNSYKTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLPPN

CSPI05G24840 (gene) of Cucumber (PI 183967) v1 genome