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CSPI05G26270 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G26270
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptiontransformer-2 protein homolog alpha-like
Genome locationChr5:25192581..25194321
RNA-Seq ExpressionCSPI05G26270
SyntenyCSPI05G26270
Gene Ontology termsGO:0007129 - synapsis (biological process)
GO:0036297 - interstrand cross-link repair (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0004528 - phosphodiesterase I activity (molecular function)
GO:0008409 - 5'-3' exonuclease activity (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0070336 - flap-structured DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN52709.2 hypothetical protein Csa_008507 [Cucumis sativus]1.6e-4697.09Show/hide
Query:  MGRRRGEMAFILVILCSSMMASFAFTQLFTIDSKQQITVREHNNSRFVERRGGGRGVIPIYVAGASSGRHGKHSHSLGNRHNNYMEFIIIGVSISIALLC
        MGRRRGEMAFILVILCSSMMASFAFTQLFTIDSKQ ITVREHNNSRFVERRGGGRGVIPIYVAGASSGRHGKHSHSLGNR NNY+EFIIIGVSISIALLC
Subjt:  MGRRRGEMAFILVILCSSMMASFAFTQLFTIDSKQQITVREHNNSRFVERRGGGRGVIPIYVAGASSGRHGKHSHSLGNRHNNYMEFIIIGVSISIALLC

Query:  RFI
        RFI
Subjt:  RFI
XP_008446753.1 PREDICTED: transformer-2 protein homolog alpha-like [Cucumis melo]1.0e-0538.39Show/hide
Query:  RRRGEMAFILVILCSSMMASFAFTQLFTIDS---KQQITVREHNNSRFVERRGGGRGVIPIY--------VAGASSGRHGKHSHSLGNRHNNYMEFIIIG
        RRR E+A IL+++ SSM+ SFAF QLF  DS   ++   + +H     +E R G    IPI+          G   G  G  + + G    NYM+FI   
Subjt:  RRRGEMAFILVILCSSMMASFAFTQLFTIDS---KQQITVREHNNSRFVERRGGGRGVIPIY--------VAGASSGRHGKHSHSLGNRHNNYMEFIIIG

Query:  VSISIALLCRFI
        VSIS+A LC  I
Subjt:  VSISIALLCRFI
XP_023550250.1 glycine-rich RNA-binding protein 2-like [Cucurbita pepo subsp. pepo]7.3e-0437.23Show/hide
Query:  MAFILVILCSSMMASFAFTQLFTIDSKQQITVREHNNS----------RFVERRG---------------------------GGRGVIPIYVAGAS----
        MA IL++LCSSM+ASFAF QLFT D   +    EH             R V R G                           GGRG  P   +G      
Subjt:  MAFILVILCSSMMASFAFTQLFTIDSKQQITVREHNNS----------RFVERRG---------------------------GGRGVIPIYVAGAS----

Query:  SGRHGKHSHSLGNRHNNYMEFIIIGVSISIALLCRFI
         GR G HS   GN H N M FI+ GVS S+A L R I
Subjt:  SGRHGKHSHSLGNRHNNYMEFIIIGVSISIALLCRFI
TrEMBL top hitse value%identityAlignment
A0A0A0KTE6 Uncharacterized protein7.1e-3796.47Show/hide
Query:  MMASFAFTQLFTIDSKQQITVREHNNSRFVERRGGGRGVIPIYVAGASSGRHGKHSHSLGNRHNNYMEFIIIGVSISIALLCRFI
        MMASFAFTQLFTIDSKQ ITVREHNNSRFVERRGGGRGVIPIYVAGASSGRHGKHSHSLGNR NNY+EFIIIGVSISIALLCRFI
Subjt:  MMASFAFTQLFTIDSKQQITVREHNNSRFVERRGGGRGVIPIYVAGASSGRHGKHSHSLGNRHNNYMEFIIIGVSISIALLCRFI
A0A1S3BFU5 transformer-2 protein homolog alpha-like4.9e-0638.39Show/hide
Query:  RRRGEMAFILVILCSSMMASFAFTQLFTIDS---KQQITVREHNNSRFVERRGGGRGVIPIY--------VAGASSGRHGKHSHSLGNRHNNYMEFIIIG
        RRR E+A IL+++ SSM+ SFAF QLF  DS   ++   + +H     +E R G    IPI+          G   G  G  + + G    NYM+FI   
Subjt:  RRRGEMAFILVILCSSMMASFAFTQLFTIDS---KQQITVREHNNSRFVERRGGGRGVIPIY--------VAGASSGRHGKHSHSLGNRHNNYMEFIIIG

Query:  VSISIALLCRFI
        VSIS+A LC  I
Subjt:  VSISIALLCRFI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGAAGAAGAGGAGAGATGGCATTCATTTTGGTAATTCTTTGTTCATCTATGATGGCTTCCTTTGCTTTCACACAACTCTTCACAATAGATTCTAAACAGCAAAT
AACTGTTAGAGAACACAATAATTCAAGATTTGTTGAACGTCGAGGGGGAGGTAGGGGAGTGATCCCAATATATGTGGCTGGCGCTTCATCAGGCCGTCATGGAAAGCATA
GCCACAGCCTTGGAAATCGTCATAACAACTATATGGAGTTTATAATAATTGGTGTTTCCATCTCTATTGCACTTTTGTGTAGATTTATATGA
mRNA sequenceShow/hide mRNA sequence
GTTCCTTCATTAATTAGTTCCACTGACAGAGAAAAATAGAGAAATAAAATGGGAAGAAGAAGAGGAGAGATGGCATTCATTTTGGTAATTCTTTGTTCATCTATGATGGC
TTCCTTTGCTTTCACACAACTCTTCACAATAGATTCTAAACAGCAAATAACTGTTAGAGAACACAATAATTCAAGATTTGTTGAACGTCGAGGGGGAGGTAGGGGAGTGA
TCCCAATATATGTGGCTGGCGCTTCATCAGGCCGTCATGGAAAGCATAGCCACAGCCTTGGAAATCGTCATAACAACTATATGGAGTTTATAATAATTGGTGTTTCCATC
TCTATTGCACTTTTGTGTAGATTTATATGATACCCAAACACCTCCCTTCGAAATCCAAAGATCCCCTGTAAGAGGATGGTTTGATTCCAAACCTTATATAATGTGCAATA
CACCTGTGTATTTAGAATCTTTTATTATGCAATTTACAAGTTACGGTCGTCACAAAGTTAATATTGTGAGACCGGCGTGTACTATTGACGCTTGGATTGAGGAGCATGAG
TGTTAGAAGACTAGAAGCTATTGCAAGGAATTTTCCCACATTTATTTATTTATTAAAATAATATTTTGTTCCATATACTTTCAAAGTTTGATCAATGTTAGTTTCTTT
Protein sequenceShow/hide protein sequence
MGRRRGEMAFILVILCSSMMASFAFTQLFTIDSKQQITVREHNNSRFVERRGGGRGVIPIYVAGASSGRHGKHSHSLGNRHNNYMEFIIIGVSISIALLCRFI