; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI05G26300 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G26300
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptiontransformer-2 protein homolog alpha-like
Genome locationChr5:25201315..25201866
RNA-Seq ExpressionCSPI05G26300
SyntenyCSPI05G26300
Gene Ontology termsGO:0036297 - interstrand cross-link repair (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0004528 - phosphodiesterase I activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0008409 - 5'-3' exonuclease activity (molecular function)
GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
GO:0070336 - flap-structured DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN52185.1 hypothetical protein Csa_009431 [Cucumis sativus]8.3e-3882.46Show/hide
Query:  MGRRK--IALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNGIPTHIAITRGGGRGG-GGGGRGNGAAGIHDQNCMELIA
        MGRR+   ALILILIYSSMLPFS AFKQL LTDNS HQESEHMEKQYGRRYN+EGRHGYT+GIP HIAIT   GRGG G    GNGAAGIHDQNCM+ IA
Subjt:  MGRRK--IALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNGIPTHIAITRGGGRGG-GGGGRGNGAAGIHDQNCMELIA

Query:  AAVSISVAYLCGLI
        AAVSISVAYLCGLI
Subjt:  AAVSISVAYLCGLI

KGN52711.2 hypothetical protein Csa_008218, partial [Cucumis sativus]4.5e-52100Show/hide
Query:  MGRRKIALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNGIPTHIAITRGGGRGGGGGGRGNGAAGIHDQNCMELIAAAV
        MGRRKIALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNGIPTHIAITRGGGRGGGGGGRGNGAAGIHDQNCMELIAAAV
Subjt:  MGRRKIALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNGIPTHIAITRGGGRGGGGGGRGNGAAGIHDQNCMELIAAAV

Query:  SISVAYLCGLI
        SISVAYLCGLI
Subjt:  SISVAYLCGLI

XP_008446753.1 PREDICTED: transformer-2 protein homolog alpha-like [Cucumis melo]9.5e-3477.97Show/hide
Query:  MGRRK----IALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNGIPTH-IAITRGGGRGGGGGGR--GNGAAGIHDQNCM
        MGRR+    IALILILIYSSM+  S AFKQLF+TD+  HQESEHMEK +GRRYN+EGRHGYTNGIP H I ITRGGGRGGGGGGR  GNGA GIHD+N M
Subjt:  MGRRK----IALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNGIPTH-IAITRGGGRGGGGGGR--GNGAAGIHDQNCM

Query:  ELIAAAVSISVAYLCGLI
        + IAAAVSISVAYLCGLI
Subjt:  ELIAAAVSISVAYLCGLI

XP_022987217.1 glycine-rich protein DOT1-like [Cucurbita maxima]6.4e-0652.38Show/hide
Query:  RRKIALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNGIPTHIAITRGGGRGGGGGGRGNGAAG
        RR++ALIL+L++SSM+  S AFKQLF TD +  QESEH EK         G++G    IP HI I  GGG G GGGGRG    G
Subjt:  RRKIALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNGIPTHIAITRGGGRGGGGGGRGNGAAG

XP_023550250.1 glycine-rich RNA-binding protein 2-like [Cucurbita pepo subsp. pepo]7.9e-0442.03Show/hide
Query:  IALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNV--------------------------EGRHGYTNGIPTHIAITRGGGRGGGGGG
        +ALIL+L+ SSM+  S AFKQLF TD +  QESEH EK YG+   V                           G  G + G       + GGG GGGGGG
Subjt:  IALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNV--------------------------EGRHGYTNGIPTHIAITRGGGRGGGGGG

Query:  RGNGAAGIHD------QNCMELIAAAVSISVAYLCGLI
        RG G  G H       QN M  I A VS SVAYL  LI
Subjt:  RGNGAAGIHD------QNCMELIAAAVSISVAYLCGLI

TrEMBL top hitse value%identityAlignment
A0A0A0KRC8 Uncharacterized protein4.0e-3882.46Show/hide
Query:  MGRRK--IALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNGIPTHIAITRGGGRGG-GGGGRGNGAAGIHDQNCMELIA
        MGRR+   ALILILIYSSMLPFS AFKQL LTDNS HQESEHMEKQYGRRYN+EGRHGYT+GIP HIAIT   GRGG G    GNGAAGIHDQNCM+ IA
Subjt:  MGRRK--IALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNGIPTHIAITRGGGRGG-GGGGRGNGAAGIHDQNCMELIA

Query:  AAVSISVAYLCGLI
        AAVSISVAYLCGLI
Subjt:  AAVSISVAYLCGLI

A0A0A0KWM3 Uncharacterized protein1.9e-5198.2Show/hide
Query:  MGRRKIALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNGIPTHIAITRGGGRGGGGGGRGNGAAGIHDQNCMELIAAAV
        MGRRKIALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNGIPTHIAITRGGGRGGGGGGRGNGAAGIHDQNCM+ IAAAV
Subjt:  MGRRKIALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNGIPTHIAITRGGGRGGGGGGRGNGAAGIHDQNCMELIAAAV

Query:  SISVAYLCGLI
        SISVAYLCGLI
Subjt:  SISVAYLCGLI

A0A1S3BFU5 transformer-2 protein homolog alpha-like4.6e-3477.97Show/hide
Query:  MGRRK----IALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNGIPTH-IAITRGGGRGGGGGGR--GNGAAGIHDQNCM
        MGRR+    IALILILIYSSM+  S AFKQLF+TD+  HQESEHMEK +GRRYN+EGRHGYTNGIP H I ITRGGGRGGGGGGR  GNGA GIHD+N M
Subjt:  MGRRK----IALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNGIPTH-IAITRGGGRGGGGGGR--GNGAAGIHDQNCM

Query:  ELIAAAVSISVAYLCGLI
        + IAAAVSISVAYLCGLI
Subjt:  ELIAAAVSISVAYLCGLI

A0A6J1J9S2 glycine-rich protein DOT1-like3.1e-0652.38Show/hide
Query:  RRKIALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNGIPTHIAITRGGGRGGGGGGRGNGAAG
        RR++ALIL+L++SSM+  S AFKQLF TD +  QESEH EK         G++G    IP HI I  GGG G GGGGRG    G
Subjt:  RRKIALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNGIPTHIAITRGGGRGGGGGGRGNGAAG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGAAGAAAGATTGCATTGATTTTGATTCTGATCTATTCATCTATGCTGCCTTTTTCATCTGCTTTCAAACAACTCTTCCTAACCGACAACAGTAATCACCAAGA
AAGTGAGCATATGGAAAAACAATATGGTAGAAGATACAATGTAGAGGGTCGACATGGTTATACAAATGGGATCCCAACACATATAGCAATTACCCGCGGAGGAGGAAGAG
GCGGCGGCGGCGGCGGCAGAGGTAACGGTGCCGCAGGAATTCACGATCAAAACTGCATGGAGTTGATAGCAGCTGCAGTTTCCATATCAGTTGCATACTTGTGTGGACTT
ATTTGA
mRNA sequenceShow/hide mRNA sequence
GAAGAAAATGGGAAGAAGAAAGATTGCATTGATTTTGATTCTGATCTATTCATCTATGCTGCCTTTTTCATCTGCTTTCAAACAACTCTTCCTAACCGACAACAGTAATC
ACCAAGAAAGTGAGCATATGGAAAAACAATATGGTAGAAGATACAATGTAGAGGGTCGACATGGTTATACAAATGGGATCCCAACACATATAGCAATTACCCGCGGAGGA
GGAAGAGGCGGCGGCGGCGGCGGCAGAGGTAACGGTGCCGCAGGAATTCACGATCAAAACTGCATGGAGTTGATAGCAGCTGCAGTTTCCATATCAGTTGCATACTTGTG
TGGACTTATTTGATATATGAAGA
Protein sequenceShow/hide protein sequence
MGRRKIALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNGIPTHIAITRGGGRGGGGGGRGNGAAGIHDQNCMELIAAAVSISVAYLCGL
I