; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI05G26330 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G26330
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionReplication protein A 14 kDa subunit B-like
Genome locationChr5:25214853..25217219
RNA-Seq ExpressionCSPI05G26330
SyntenyCSPI05G26330
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0031981 - nuclear lumen (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601223.1 Replication protein A 14 kDa subunit B, partial [Cucurbita argyrosperma subsp. sororia]5.1e-4585.85Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE
        MDTSNPAVF NGELL+MH GRKIRAVVQVIQSDGG+VTGKSTDEQ LT+HGLPTVP MNFVEVVGIAE NK I VE WTDFG TFD  SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE

Query:  FRSLFI
        FRSLF+
Subjt:  FRSLFI

XP_004135037.1 replication protein A 14 kDa subunit B [Cucumis sativus]1.0e-53100Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE
        MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE

Query:  FRSLFI
        FRSLFI
Subjt:  FRSLFI

XP_008446755.1 PREDICTED: replication protein A 14 kDa subunit B-like [Cucumis melo]2.2e-5196.23Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE
        MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIA+SNKTI VE WTDFGTTFDT SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE

Query:  FRSLFI
        FRSLFI
Subjt:  FRSLFI

XP_023539791.1 replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]5.1e-4585.85Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE
        MDTSNPAVF NGELL++H GRKIRAVVQVIQSDGG+VTGKSTDEQ LT+HGLPTVP MNFVEVVGIAE NK I VE WTDFGTTFD  SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE

Query:  FRSLFI
        FRSLF+
Subjt:  FRSLFI

XP_038893019.1 replication protein A 14 kDa subunit B-like [Benincasa hispida]1.7e-4893.4Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE
        MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTI GLPTVP MNFVEVVGIAE+NK I VE WTDFGTTFDT SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE

Query:  FRSLFI
        FRSLFI
Subjt:  FRSLFI

TrEMBL top hitse value%identityAlignment
A0A0A0KRF2 Uncharacterized protein5.0e-54100Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE
        MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE

Query:  FRSLFI
        FRSLFI
Subjt:  FRSLFI

A0A1S3BGM8 replication protein A 14 kDa subunit B-like1.0e-5196.23Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE
        MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIA+SNKTI VE WTDFGTTFDT SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE

Query:  FRSLFI
        FRSLFI
Subjt:  FRSLFI

A0A5A7SU42 Replication protein A 14 kDa subunit B-like1.0e-5196.23Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE
        MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIA+SNKTI VE WTDFGTTFDT SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE

Query:  FRSLFI
        FRSLFI
Subjt:  FRSLFI

A0A6J1D9X1 replication protein A 14 kDa subunit B-like8.3e-4178.3Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE
        MDTSNPAVFVN ELL +H GRKIRAV QV +SDGG+VTGKSTDEQ+LT+HGLP VP MNFVEV+GIAESNK I VE  TDFG TFD  SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE

Query:  FRSLFI
        F+S+F+
Subjt:  FRSLFI

A0A6J1JC99 replication protein A 14 kDa subunit B-like2.1e-4484.91Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE
        MDTSNPAVF NGELL+MH GRKIRAVVQVIQSD G+VTGKSTDEQ LT+HGLPTVP MNFVEVVGIAE NK I VE WTDFGT FD  SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE

Query:  FRSLFI
        FRSLF+
Subjt:  FRSLFI

SwissProt top hitse value%identityAlignment
Q6NLG7 Replication protein A 14 kDa subunit B3.0e-3259.43Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE
        MDTS+PA FVNG LL  + G+K+RAV+QVI+SD G V GKSTD+QQ+ + G P  P   ++EV+GIAE++ TI+ E WT+FG +FD  +YN+LC+LANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE

Query:  FRSLFI
        FR LFI
Subjt:  FRSLFI

Q9LXK1 Replication protein A 14 kDa subunit A2.0e-2855.14Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHG-LPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANG
        MDTS+P+ FVNG LL    G+K+R V+QV  S+ G V GKSTD+ Q+ + G  P  P   ++EV+GIAES+  I+ E WT+FG TFDT +YN+LC+LANG
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHG-LPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANG

Query:  EFRSLFI
        EF+ LFI
Subjt:  EFRSLFI

Q9SDK9 Replication protein A 14 kDa subunit1.3e-2752.83Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE
        MDTS PA FVNGE+L M  GR++R VVQ  + +GG++ G+STD  QLTI G    P  ++VE++GIAE N+ I+ E  TDFG  FD A +N LC+LANG+
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE

Query:  FRSLFI
         + LF+
Subjt:  FRSLFI

Arabidopsis top hitse value%identityAlignment
AT3G52630.1 Nucleic acid-binding, OB-fold-like protein1.4e-2955.14Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHG-LPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANG
        MDTS+P+ FVNG LL    G+K+R V+QV  S+ G V GKSTD+ Q+ + G  P  P   ++EV+GIAES+  I+ E WT+FG TFDT +YN+LC+LANG
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHG-LPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANG

Query:  EFRSLFI
        EF+ LFI
Subjt:  EFRSLFI

AT3G52630.2 Nucleic acid-binding, OB-fold-like protein1.4e-2955.14Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHG-LPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANG
        MDTS+P+ FVNG LL    G+K+R V+QV  S+ G V GKSTD+ Q+ + G  P  P   ++EV+GIAES+  I+ E WT+FG TFDT +YN+LC+LANG
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHG-LPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANG

Query:  EFRSLFI
        EF+ LFI
Subjt:  EFRSLFI

AT4G18590.1 Nucleic acid-binding, OB-fold-like protein2.2e-3359.43Show/hide
Query:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE
        MDTS+PA FVNG LL  + G+K+RAV+QVI+SD G V GKSTD+QQ+ + G P  P   ++EV+GIAE++ TI+ E WT+FG +FD  +YN+LC+LANGE
Subjt:  MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGE

Query:  FRSLFI
        FR LFI
Subjt:  FRSLFI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATACGTCAAACCCTGCAGTTTTTGTTAATGGTGAGTTATTGAGCATGCATTGTGGAAGAAAGATTCGAGCAGTGGTTCAAGTTATCCAAAGTGATGGTGGAATTGT
TACGGGAAAGTCTACGGATGAACAACAATTGACTATTCATGGCTTGCCCACAGTCCCTCACATGAACTTCGTAGAGGTAGTTGGTATTGCTGAAAGCAACAAGACCATCA
AGGTTGAAGATTGGACAGACTTTGGAACCACTTTTGATACTGCATCTTACAATCAGCTATGCCAACTTGCAAATGGGGAATTCAGAAGTTTATTTATTTAG
mRNA sequenceShow/hide mRNA sequence
TTGGATTCTGTTTCTGCATCAATTTTGTTATACGCAACGCCATGAGTTGAGCAGAGTTACTACAGGATATGGATACGTCAAACCCTGCAGTTTTTGTTAATGGTGAGTTA
TTGAGCATGCATTGTGGAAGAAAGATTCGAGCAGTGGTTCAAGTTATCCAAAGTGATGGTGGAATTGTTACGGGAAAGTCTACGGATGAACAACAATTGACTATTCATGG
CTTGCCCACAGTCCCTCACATGAACTTCGTAGAGGTAGTTGGTATTGCTGAAAGCAACAAGACCATCAAGGTTGAAGATTGGACAGACTTTGGAACCACTTTTGATACTG
CATCTTACAATCAGCTATGCCAACTTGCAAATGGGGAATTCAGAAGTTTATTTATTTAGTGATTTGTAGGTACAGCATGAGAAGAAGCAAGAGGTACAATTTGTTATGTG
ATTTTGAGTCTTCTATGCTTGTAACTCACGTGGGAGTGTTGAACTGCTAATCTATTAAAAGAACTCCTGTTTTGGTCAATATGTATTGTACTAAGCTATAAGCTAGGAGC
TAGGTACGGAATTTTCATGGACTTCTTAAGGTTCCAATTTTCACATTTTTCACTAGGAAAAACCCAAGTGTAGTTGGGTGCACACATCTTTTGTATAGTTCGACTGCCAT
CCAATTAGAATGTGTTAGGTTGCAGTTGCACATTGTCGTTGGTCTTTTTCATTGGGTCATACTATTCAATCACTAGTTTCTCTTATTTGGAAATGATTATGAAATGGTGA
AAATTCATTTTCATTATCCAAAAGCTACTCCGAA
Protein sequenceShow/hide protein sequence
MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI