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CSPI05G26510 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G26510
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionDNA-directed RNA polymerase I subunit like
Genome locationChr5:25330173..25331019
RNA-Seq ExpressionCSPI05G26510
SyntenyCSPI05G26510
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034669.1 uncharacterized protein E6C27_scaffold65G006880 [Cucumis melo var. makuwa]2.9e-6889.63Show/hide
Query:  MLGFPTIPHQLKVSPSFS---SISSPCSLFRPLYKFPIHHTFYNSQFLISSNHRRFTAFASNKNTEFGGSIKEREGERNGANGSSNGGDDLKKERGPVFN
        MLGF TIPHQLK+SPS +   SISSP SLF PLYKFP+HHTF+NS+FLISSN RRFTA ASNKNTEFGGSIKEREGERNGA  SSNGGDDLKKERGPVFN
Subjt:  MLGFPTIPHQLKVSPSFS---SISSPCSLFRPLYKFPIHHTFYNSQFLISSNHRRFTAFASNKNTEFGGSIKEREGERNGANGSSNGGDDLKKERGPVFN

Query:  IKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL
        IKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALL+FILITLL
Subjt:  IKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL

XP_008446780.1 PREDICTED: uncharacterized protein LOC103489407 [Cucumis melo]2.9e-6889.63Show/hide
Query:  MLGFPTIPHQLKVSPSFS---SISSPCSLFRPLYKFPIHHTFYNSQFLISSNHRRFTAFASNKNTEFGGSIKEREGERNGANGSSNGGDDLKKERGPVFN
        MLGF TIPHQLK+SPS +   SISSP SLF PLYKFP+HHTF+NS+FLISSN RRFTA ASNKNTEFGGSIKEREGERNGA  SSNGGDDLKKERGPVFN
Subjt:  MLGFPTIPHQLKVSPSFS---SISSPCSLFRPLYKFPIHHTFYNSQFLISSNHRRFTAFASNKNTEFGGSIKEREGERNGANGSSNGGDDLKKERGPVFN

Query:  IKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL
        IKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALL+FILITLL
Subjt:  IKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL

XP_011655841.1 uncharacterized protein LOC105435592 [Cucumis sativus]1.5e-7597.52Show/hide
Query:  MLGFPTIPHQLKVSPSFSSISSPCSLFRPLYKFPIHHTFYNSQFLISSNHRRFTAFASNKNTEFGGSIKEREGERNGANGSSNGGDDLKKERGPVFNIKW
        MLGF TIPHQLKVSPSF+SISSP SLFRPLYKFPIHHTFYNSQFLISS+HRRFTAFASNKNTEFGGSIKEREGERNGANGSSNGGDDLKKERGPVFNIKW
Subjt:  MLGFPTIPHQLKVSPSFSSISSPCSLFRPLYKFPIHHTFYNSQFLISSNHRRFTAFASNKNTEFGGSIKEREGERNGANGSSNGGDDLKKERGPVFNIKW

Query:  AELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL
        AELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL
Subjt:  AELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL

XP_022993576.1 uncharacterized protein LOC111489528 [Cucurbita maxima]1.0e-4973.65Show/hide
Query:  MLGFPTIPHQLKVSPSFSSISSPCSLFR------PLYKFPIHHTFYNSQFLISSNHRRFTAFASNKNTEFGGSIKEREGERNGANGSSNGGDDLKKERGP
        MLGF TIP+Q K+SPS SS SSP  L        PL+KFP+H+    S+  IS   +RF A ASN +   GG+IKEREGERNGA G S G DDL+KERGP
Subjt:  MLGFPTIPHQLKVSPSFSSISSPCSLFR------PLYKFPIHHTFYNSQFLISSNHRRFTAFASNKNTEFGGSIKEREGERNGANGSSNGGDDLKKERGP

Query:  VFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL
        VFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALL+FILITLL
Subjt:  VFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL

XP_023549272.1 uncharacterized protein LOC111807677 [Cucurbita pepo subsp. pepo]8.6e-5275.45Show/hide
Query:  MLGFPTIPHQLKVSPSFSSISSPCSLFR------PLYKFPIHHTFYNSQFLISSNHRRFTAFASNKNTEFGGSIKEREGERNGANGSSNGGDDLKKERGP
        MLGF TIP+Q K+SPS SS SSP SL        PL+KFP+H+    S+  I    +RFTA ASN +   GG+IKEREGERNGA G SNGGDDL+KERGP
Subjt:  MLGFPTIPHQLKVSPSFSSISSPCSLFR------PLYKFPIHHTFYNSQFLISSNHRRFTAFASNKNTEFGGSIKEREGERNGANGSSNGGDDLKKERGP

Query:  VFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL
        VFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALL+FILITLL
Subjt:  VFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL

TrEMBL top hitse value%identityAlignment
A0A0A0KRG8 Uncharacterized protein7.0e-7697.52Show/hide
Query:  MLGFPTIPHQLKVSPSFSSISSPCSLFRPLYKFPIHHTFYNSQFLISSNHRRFTAFASNKNTEFGGSIKEREGERNGANGSSNGGDDLKKERGPVFNIKW
        MLGF TIPHQLKVSPSF+SISSP SLFRPLYKFPIHHTFYNSQFLISS+HRRFTAFASNKNTEFGGSIKEREGERNGANGSSNGGDDLKKERGPVFNIKW
Subjt:  MLGFPTIPHQLKVSPSFSSISSPCSLFRPLYKFPIHHTFYNSQFLISSNHRRFTAFASNKNTEFGGSIKEREGERNGANGSSNGGDDLKKERGPVFNIKW

Query:  AELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL
        AELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL
Subjt:  AELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL

A0A1S3BFX0 uncharacterized protein LOC1034894071.4e-6889.63Show/hide
Query:  MLGFPTIPHQLKVSPSFS---SISSPCSLFRPLYKFPIHHTFYNSQFLISSNHRRFTAFASNKNTEFGGSIKEREGERNGANGSSNGGDDLKKERGPVFN
        MLGF TIPHQLK+SPS +   SISSP SLF PLYKFP+HHTF+NS+FLISSN RRFTA ASNKNTEFGGSIKEREGERNGA  SSNGGDDLKKERGPVFN
Subjt:  MLGFPTIPHQLKVSPSFS---SISSPCSLFRPLYKFPIHHTFYNSQFLISSNHRRFTAFASNKNTEFGGSIKEREGERNGANGSSNGGDDLKKERGPVFN

Query:  IKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL
        IKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALL+FILITLL
Subjt:  IKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL

A0A5D3CD16 Uncharacterized protein1.4e-6889.63Show/hide
Query:  MLGFPTIPHQLKVSPSFS---SISSPCSLFRPLYKFPIHHTFYNSQFLISSNHRRFTAFASNKNTEFGGSIKEREGERNGANGSSNGGDDLKKERGPVFN
        MLGF TIPHQLK+SPS +   SISSP SLF PLYKFP+HHTF+NS+FLISSN RRFTA ASNKNTEFGGSIKEREGERNGA  SSNGGDDLKKERGPVFN
Subjt:  MLGFPTIPHQLKVSPSFS---SISSPCSLFRPLYKFPIHHTFYNSQFLISSNHRRFTAFASNKNTEFGGSIKEREGERNGANGSSNGGDDLKKERGPVFN

Query:  IKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL
        IKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALL+FILITLL
Subjt:  IKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL

A0A6J1GYA2 uncharacterized protein LOC1114585794.3e-4973.05Show/hide
Query:  MLGFPTIPHQLKVSPSFSSISSPCSLFR------PLYKFPIHHTFYNSQFLISSNHRRFTAFASNKNTEFGGSIKEREGERNGANGSSNGGDDLKKERGP
        MLGF TIP+Q K+SPS  S SSP SL         L+KFP+H+    S+  I    +RFTA ASN +   GG+IKEREGERNGA G S G DDL+KERGP
Subjt:  MLGFPTIPHQLKVSPSFSSISSPCSLFR------PLYKFPIHHTFYNSQFLISSNHRRFTAFASNKNTEFGGSIKEREGERNGANGSSNGGDDLKKERGP

Query:  VFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL
        VFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALL+FILITLL
Subjt:  VFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL

A0A6J1JWP5 uncharacterized protein LOC1114895285.1e-5073.65Show/hide
Query:  MLGFPTIPHQLKVSPSFSSISSPCSLFR------PLYKFPIHHTFYNSQFLISSNHRRFTAFASNKNTEFGGSIKEREGERNGANGSSNGGDDLKKERGP
        MLGF TIP+Q K+SPS SS SSP  L        PL+KFP+H+    S+  IS   +RF A ASN +   GG+IKEREGERNGA G S G DDL+KERGP
Subjt:  MLGFPTIPHQLKVSPSFSSISSPCSLFR------PLYKFPIHHTFYNSQFLISSNHRRFTAFASNKNTEFGGSIKEREGERNGANGSSNGGDDLKKERGP

Query:  VFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL
        VFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALL+FILITLL
Subjt:  VFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G40045.1 unknown protein1.2e-1647.48Show/hide
Query:  PCSLFRPLYKFPIHHTFYNSQFLISSNHRRFTAFASNKNTEFGGSIKEREGERNGANGSSNGGDDLKKERGPVFNIKWAELLIDPDPDNILAVALTGLLA
        P +  +P + + I H  ++ + L  S        A N N     S KE  G  N    +++ G+  KK++   F+ KW ELL +PD DN +AV L G+L 
Subjt:  PCSLFRPLYKFPIHHTFYNSQFLISSNHRRFTAFASNKNTEFGGSIKEREGERNGANGSSNGGDDLKKERGPVFNIKWAELLIDPDPDNILAVALTGLLA

Query:  WASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL
        WAS+QVL QLFFIS AILVAALKYSFIAALL+FIL+TLL
Subjt:  WASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGGGTTTCCCACAATCCCACACCAATTGAAGGTTTCCCCATCTTTCTCTTCAATCTCATCACCTTGTTCCCTCTTTCGTCCACTCTACAAATTCCCTATCCATCA
CACATTTTACAACTCCCAATTTCTAATTTCCAGTAACCACAGAAGATTCACAGCGTTTGCGAGCAACAAGAACACTGAATTTGGCGGAAGTATAAAGGAAAGAGAAGGAG
AAAGAAATGGGGCAAACGGCTCCTCTAATGGCGGCGATGACTTGAAGAAAGAACGAGGGCCGGTTTTCAATATCAAATGGGCTGAACTTTTGATCGACCCGGATCCTGAT
AACATCTTGGCCGTTGCGTTGACTGGTTTGCTTGCTTGGGCAAGTGTGCAGGTCTTGTGGCAGCTATTCTTCATCTCTTTGGCTATTTTAGTGGCTGCTCTTAAGTATTC
TTTTATTGCTGCGCTTCTTCTTTTCATTCTAATTACTTTACTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAATAATATATATATATATAGAAAAACAGAACTAGCTTTGAAATTGGTCTAAATAAAAAATAAAAATAACGCCCGGCGTTCTACAACGCACATTTACTACTAAGTTC
CTACCCTCCCCATCTCTTCCCGTCTTGTTTCCATCGCCCGAAAACCATGTGTGCTGCGAACCGCTATAGATTTCGGGAACGTTTCGGACAAAATTGAACCAAAAATCAAT
ACAACAATGTTAGGGTTTCCCACAATCCCACACCAATTGAAGGTTTCCCCATCTTTCTCTTCAATCTCATCACCTTGTTCCCTCTTTCGTCCACTCTACAAATTCCCTAT
CCATCACACATTTTACAACTCCCAATTTCTAATTTCCAGTAACCACAGAAGATTCACAGCGTTTGCGAGCAACAAGAACACTGAATTTGGCGGAAGTATAAAGGAAAGAG
AAGGAGAAAGAAATGGGGCAAACGGCTCCTCTAATGGCGGCGATGACTTGAAGAAAGAACGAGGGCCGGTTTTCAATATCAAATGGGCTGAACTTTTGATCGACCCGGAT
CCTGATAACATCTTGGCCGTTGCGTTGACTGGTTTGCTTGCTTGGGCAAGTGTGCAGGTCTTGTGGCAGCTATTCTTCATCTCTTTGGCTATTTTAGTGGCTGCTCTTAA
GTATTCTTTTATTGCTGCGCTTCTTCTTTTCATTCTAATTACTTTACTTTAGAAGTGCAACAACATTCTGTATAGTCCCTTCACTTTTATGCTTGATTAATTGGATTTCC
ATCGAAATTCCATGGCTTCGGTGAATAAATGTGTTTGTCTAGTGTTATGAGAATGCAAAACTGCAAATACAGTAGGC
Protein sequenceShow/hide protein sequence
MLGFPTIPHQLKVSPSFSSISSPCSLFRPLYKFPIHHTFYNSQFLISSNHRRFTAFASNKNTEFGGSIKEREGERNGANGSSNGGDDLKKERGPVFNIKWAELLIDPDPD
NILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL