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CSPI05G26850 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G26850
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTranslation initiation factor IF-2, putative isoform 1
Genome locationChr5:25605299..25608465
RNA-Seq ExpressionCSPI05G26850
SyntenyCSPI05G26850
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0003743 - translation initiation factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034696.1 Translation initiation factor IF-2, putative isoform 1 [Cucumis melo var. makuwa]4.3e-9293.37Show/hide
Query:  MARRKAKKTVKKSSPSSGRDAKDEAANKLKTDSDEDVERHAAAIRAIRDVEIERLITVLRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGEQGEIEVR
        MARRKAKKTVKKSSPSSGR AKDEAA+K+KT SDEDVERHAAAIRAIRDVEIERLIT LRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRG+QGEIEV+
Subjt:  MARRKAKKTVKKSSPSSGRDAKDEAANKLKTDSDEDVERHAAAIRAIRDVEIERLITVLRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGEQGEIEVR

Query:  WKDTEDELHTNPADGVDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMTLGMPDILQTPGVRIFMISNQR
        WKDTEDELHTNPADGVDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNM LGMPDILQTPG     ISNQR
Subjt:  WKDTEDELHTNPADGVDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMTLGMPDILQTPGVRIFMISNQR

KAG7034170.1 hypothetical protein SDJN02_03897, partial [Cucurbita argyrosperma subsp. argyrosperma]9.9e-8987.13Show/hide
Query:  MARRKAKKTVKKSSPSSGRDAKDEAANKLKTD------SDEDVERHAAAIRAIRDVEIERLITVLRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGEQ
        MARRKAKK+VKKSSPS  R+AKD +AN+LK++      SDEDVERHA AIRAIRDVEIERLIT LRLLRSYFNKEQLQTPLLQFFEEKLPSLSIS RGEQ
Subjt:  MARRKAKKTVKKSSPSSGRDAKDEAANKLKTD------SDEDVERHAAAIRAIRDVEIERLITVLRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGEQ

Query:  GEIEVRWKDTEDELHTNPADGVDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMTLGMPDILQTPGVRIFMISN
        GEIEV+WKDTEDELHTNPADG+DIHASLLHRLSTAYP CSAGMRSFNGFEFSSKSVKTNPFN ENLQIPNF LEEPSDNM LGMPD+LQTPGVRIFM+SN
Subjt:  GEIEVRWKDTEDELHTNPADGVDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMTLGMPDILQTPGVRIFMISN

Query:  QR
        QR
Subjt:  QR

XP_016900279.1 PREDICTED: uncharacterized protein LOC103489436 [Cucumis melo]4.3e-9293.37Show/hide
Query:  MARRKAKKTVKKSSPSSGRDAKDEAANKLKTDSDEDVERHAAAIRAIRDVEIERLITVLRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGEQGEIEVR
        MARRKAKKTVKKSSPSSGR AKDEAA+K+KT SDEDVERHAAAIRAIRDVEIERLIT LRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRG+QGEIEV+
Subjt:  MARRKAKKTVKKSSPSSGRDAKDEAANKLKTDSDEDVERHAAAIRAIRDVEIERLITVLRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGEQGEIEVR

Query:  WKDTEDELHTNPADGVDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMTLGMPDILQTPGVRIFMISNQR
        WKDTEDELHTNPADGVDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNM LGMPDILQTPG     ISNQR
Subjt:  WKDTEDELHTNPADGVDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMTLGMPDILQTPGVRIFMISNQR

XP_031741813.1 uncharacterized protein LOC101204054 [Cucumis sativus]1.5e-10097.98Show/hide
Query:  MIMARRKAKKTVKKSSPSSGRDAKDEAANKLKTDSDEDVERHAAAIRAIRDVEIERLITVLRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGEQGEIE
        MIMARRKAKKTVKKSSPSSGRDAKDEA NKLKTDSDEDVERHAAAIRAIRDVEIERLITVLRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRG+QGEIE
Subjt:  MIMARRKAKKTVKKSSPSSGRDAKDEAANKLKTDSDEDVERHAAAIRAIRDVEIERLITVLRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGEQGEIE

Query:  VRWKDTEDELHTNPADGVDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMTLGMPDILQTPGVRIFMISNQR
        VRWKDTEDELHTNPADGVDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSD+MTLGMPDI+QTPGVRIFMISNQR
Subjt:  VRWKDTEDELHTNPADGVDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMTLGMPDILQTPGVRIFMISNQR

XP_038891412.1 uncharacterized protein LOC120080833 [Benincasa hispida]3.8e-8889.29Show/hide
Query:  MARRKAKKTVKKSSPSSGRDAKDEAANKLKTDSDEDVERHAAAIRAIRDVEIERLITVLRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGEQGEIEVR
        MARR+AKKTVKKSSPS GRDAKDEAAN+LK+D DEDVERHAAAIRAIRDVEIERLIT LRLLRSYFNKEQLQTPLLQFFEEKLP+LSIS RGEQGEIEV+
Subjt:  MARRKAKKTVKKSSPSSGRDAKDEAANKLKTDSDEDVERHAAAIRAIRDVEIERLITVLRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGEQGEIEVR

Query:  WKDTEDELHTNPADGVDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMTLGMPDILQTPGVRIFMISNQR
        WKDTEDELHTNPADG+DIHASLLH LSTAYPYCSAGMRSFNGFEFSSKSVKTNPFN ENLQIPN  LEEPSDNM LGMP+ILQTPGV     SNQR
Subjt:  WKDTEDELHTNPADGVDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMTLGMPDILQTPGVRIFMISNQR

TrEMBL top hitse value%identityAlignment
A0A0A0KRH4 Uncharacterized protein7.1e-10197.98Show/hide
Query:  MIMARRKAKKTVKKSSPSSGRDAKDEAANKLKTDSDEDVERHAAAIRAIRDVEIERLITVLRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGEQGEIE
        MIMARRKAKKTVKKSSPSSGRDAKDEA NKLKTDSDEDVERHAAAIRAIRDVEIERLITVLRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRG+QGEIE
Subjt:  MIMARRKAKKTVKKSSPSSGRDAKDEAANKLKTDSDEDVERHAAAIRAIRDVEIERLITVLRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGEQGEIE

Query:  VRWKDTEDELHTNPADGVDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMTLGMPDILQTPGVRIFMISNQR
        VRWKDTEDELHTNPADGVDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSD+MTLGMPDI+QTPGVRIFMISNQR
Subjt:  VRWKDTEDELHTNPADGVDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMTLGMPDILQTPGVRIFMISNQR

A0A1S4DWB9 uncharacterized protein LOC1034894362.1e-9293.37Show/hide
Query:  MARRKAKKTVKKSSPSSGRDAKDEAANKLKTDSDEDVERHAAAIRAIRDVEIERLITVLRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGEQGEIEVR
        MARRKAKKTVKKSSPSSGR AKDEAA+K+KT SDEDVERHAAAIRAIRDVEIERLIT LRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRG+QGEIEV+
Subjt:  MARRKAKKTVKKSSPSSGRDAKDEAANKLKTDSDEDVERHAAAIRAIRDVEIERLITVLRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGEQGEIEVR

Query:  WKDTEDELHTNPADGVDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMTLGMPDILQTPGVRIFMISNQR
        WKDTEDELHTNPADGVDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNM LGMPDILQTPG     ISNQR
Subjt:  WKDTEDELHTNPADGVDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMTLGMPDILQTPGVRIFMISNQR

A0A5A7SXV4 Translation initiation factor IF-2, putative isoform 12.1e-9293.37Show/hide
Query:  MARRKAKKTVKKSSPSSGRDAKDEAANKLKTDSDEDVERHAAAIRAIRDVEIERLITVLRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGEQGEIEVR
        MARRKAKKTVKKSSPSSGR AKDEAA+K+KT SDEDVERHAAAIRAIRDVEIERLIT LRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRG+QGEIEV+
Subjt:  MARRKAKKTVKKSSPSSGRDAKDEAANKLKTDSDEDVERHAAAIRAIRDVEIERLITVLRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGEQGEIEVR

Query:  WKDTEDELHTNPADGVDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMTLGMPDILQTPGVRIFMISNQR
        WKDTEDELHTNPADGVDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNM LGMPDILQTPG     ISNQR
Subjt:  WKDTEDELHTNPADGVDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMTLGMPDILQTPGVRIFMISNQR

A0A6J1GFT3 uncharacterized protein LOC1114537766.0e-8484.65Show/hide
Query:  MARRKAKKTVKKSSPSSGRDAKDEAANKLKTD------SDEDVERHAAAIRAIRDVEIERLITVLRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGEQ
        MARRKAKK+VKKSSPS  R+AKD +AN+LK++      SDEDVERHA AIRAIRDVEIERLIT LRLLRSYFNKEQLQTPLLQFFEEKLPSLSIS RGEQ
Subjt:  MARRKAKKTVKKSSPSSGRDAKDEAANKLKTD------SDEDVERHAAAIRAIRDVEIERLITVLRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGEQ

Query:  GEIEVRWKDTEDELHTNPADGVDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMTLGMPDILQTPGVRIFMISN
        GEIEV+WKDTEDELHTNPADG+DIHASLLHRLSTAYP CSAGMRSFNGFEFSSKSVKTNPFN ENLQIPNF LEEPSDNM LGMPD+L+TPGV     SN
Subjt:  GEIEVRWKDTEDELHTNPADGVDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMTLGMPDILQTPGVRIFMISN

Query:  QR
        QR
Subjt:  QR

A0A6J1ILD3 uncharacterized protein LOC1114784963.0e-8384.16Show/hide
Query:  MARRKAKKTVKKSSPSSGRDAKDEAANKLKTD------SDEDVERHAAAIRAIRDVEIERLITVLRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGEQ
        MARRKAKK+VKKSSPS  R+AKD +AN+LK++      SDEDVERHA AIRAIRDVEIERLIT LRLLRSYFNKEQLQTPLLQFF EKLPSLSIS RGEQ
Subjt:  MARRKAKKTVKKSSPSSGRDAKDEAANKLKTD------SDEDVERHAAAIRAIRDVEIERLITVLRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGEQ

Query:  GEIEVRWKDTEDELHTNPADGVDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMTLGMPDILQTPGVRIFMISN
        GEIEV+WKDTEDELHTNPADG+DIHASLLHRLSTAYP CSAG+RSFNGFEFSSKSVKTNPFN ENLQIPNFVLEEPSDNM LGMPD+LQTPG      SN
Subjt:  GEIEVRWKDTEDELHTNPADGVDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMTLGMPDILQTPGVRIFMISN

Query:  QR
        QR
Subjt:  QR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G39630.1 unknown protein1.5e-3143.85Show/hide
Query:  MARRKAKKTVKKSSPSSGRDAKDEAANKLKTDSDEDVERHAAAIRAIRDVEIERLITVLRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGEQGEIEVR
        M +RKAK+ VK +      + +     K +   DE+VER  AAIRAIRDVEIE+++T LRLLRSYF +EQL TP+L FF+E LP LSIS   E GEIE++
Subjt:  MARRKAKKTVKKSSPSSGRDAKDEAANKLKTDSDEDVERHAAAIRAIRDVEIERLITVLRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGEQGEIEVR

Query:  WKDTEDELHTNPADGVDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMTLGMPDILQTPGV
        W+D   +      +GVD++ S+L RLS  +    +   S  G++    +VK N    +N Q+ N V +  S+N  L   D  QTPGV
Subjt:  WKDTEDELHTNPADGVDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMTLGMPDILQTPGV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAATGGCAAGAAGAAAGGCAAAGAAAACAGTTAAGAAGTCCAGCCCTTCATCTGGACGAGACGCAAAAGATGAAGCAGCGAATAAGTTAAAGACTGACTCCGACGA
AGATGTTGAACGGCATGCTGCTGCAATCCGTGCCATTCGGGATGTGGAGATCGAGCGTTTGATTACTGTATTGCGGTTGCTTCGTTCGTATTTCAACAAAGAGCAATTGC
AAACTCCTCTATTGCAATTTTTCGAAGAGAAACTTCCAAGCTTGTCCATTTCGATAAGAGGCGAACAAGGTGAAATTGAAGTACGATGGAAGGATACAGAGGATGAATTA
CACACCAATCCAGCGGATGGAGTAGATATACATGCTTCTCTTCTTCATCGCCTTTCCACAGCTTATCCTTACTGCTCTGCCGGAATGCGATCGTTTAATGGATTTGAATT
TTCCAGTAAATCAGTGAAAACAAATCCTTTCAATGCTGAGAACCTGCAAATTCCGAACTTTGTTTTGGAGGAGCCCTCGGATAATATGACGCTTGGCATGCCAGATATTC
TCCAGACTCCTGGCGTTCGTATCTTCATGATAAGTAACCAAAGATTTGTCTTTTGGGATGACACCGAAAACCCGAAGACTGCCGAAGCCAGGCGAGATGCTTGTGTCTAT
CCATGGATCCCCACTTGGTGTTTACAAGGAAGACAACATGGAAGCAATCCATGA
mRNA sequenceShow/hide mRNA sequence
CTGCGAACTTCAATTAATTTCACTGTGCGCTACATTAATTTTGGGTTTGAAAGTTTTTTGTATTGTTTTCATTGACGAAAATTCAGTGACCAAGTGTGGATTCCTCTCAG
AATGCTGCAACGTTAGTAGTTCAGTAAAGTCAAGAAGAAAGACTTGTTGATGATAATGGCAAGAAGAAAGGCAAAGAAAACAGTTAAGAAGTCCAGCCCTTCATCTGGAC
GAGACGCAAAAGATGAAGCAGCGAATAAGTTAAAGACTGACTCCGACGAAGATGTTGAACGGCATGCTGCTGCAATCCGTGCCATTCGGGATGTGGAGATCGAGCGTTTG
ATTACTGTATTGCGGTTGCTTCGTTCGTATTTCAACAAAGAGCAATTGCAAACTCCTCTATTGCAATTTTTCGAAGAGAAACTTCCAAGCTTGTCCATTTCGATAAGAGG
CGAACAAGGTGAAATTGAAGTACGATGGAAGGATACAGAGGATGAATTACACACCAATCCAGCGGATGGAGTAGATATACATGCTTCTCTTCTTCATCGCCTTTCCACAG
CTTATCCTTACTGCTCTGCCGGAATGCGATCGTTTAATGGATTTGAATTTTCCAGTAAATCAGTGAAAACAAATCCTTTCAATGCTGAGAACCTGCAAATTCCGAACTTT
GTTTTGGAGGAGCCCTCGGATAATATGACGCTTGGCATGCCAGATATTCTCCAGACTCCTGGCGTTCGTATCTTCATGATAAGTAACCAAAGATTTGTCTTTTGGGATGA
CACCGAAAACCCGAAGACTGCCGAAGCCAGGCGAGATGCTTGTGTCTATCCATGGATCCCCACTTGGTGTTTACAAGGAAGACAACATGGAAGCAATCCATGAATCAGAA
GAGGGTTGATCGGTTGATTCAAGGTCACTTGACCGATTGTCAATAAAACCGAAACTTCAGATGCGTTTATCCCCGACTGTCATTCTACCCTTTCTTTCATAAGAAGGTTG
AGTCAAGGACTCTTAAGGTTTGTTTGGTTCATGATCCATAAACAAATTAGTAAATACAACTCTAGAAACCACAGAAATGTGGGATGATAGAGAAAGTGAAAATGGAAAGA
TGCAGCTTGAAAATTAGGACAACTCTGGTGTGGTTTAGAGTGAAAATGGAAGAAATATGGTTTGGTTTGGGCCTC
Protein sequenceShow/hide protein sequence
MIMARRKAKKTVKKSSPSSGRDAKDEAANKLKTDSDEDVERHAAAIRAIRDVEIERLITVLRLLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGEQGEIEVRWKDTEDEL
HTNPADGVDIHASLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMTLGMPDILQTPGVRIFMISNQRFVFWDDTENPKTAEARRDACVY
PWIPTWCLQGRQHGSNP