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CSPI05G27630 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G27630
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionprotein LATERAL ROOT PRIMORDIUM 1
Genome locationChr5:26082163..26084199
RNA-Seq ExpressionCSPI05G27630
SyntenyCSPI05G27630
Gene Ontology termsGO:0009734 - auxin-activated signaling pathway (biological process)
GO:0009851 - auxin biosynthetic process (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR006511 - SHORT INTERNODES, C-terminal
IPR007818 - SHI protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034761.1 protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo var. makuwa]6.4e-6489.61Show/hide
Query:  MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQ----------------DASFKKSLPGHVRAPAVFRCHRV
        MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQ                DASFKKSLPGHVRAPAVFRCHRV
Subjt:  MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQ----------------DASFKKSLPGHVRAPAVFRCHRV

Query:  TAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE
        TAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE
Subjt:  TAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE

XP_004142483.1 protein LATERAL ROOT PRIMORDIUM 1 [Cucumis sativus]4.8e-67100Show/hide
Query:  MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATV
        MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATV
Subjt:  MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATV

Query:  NIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE
        NIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE
Subjt:  NIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE

XP_008446964.1 PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo]4.8e-67100Show/hide
Query:  MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATV
        MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATV
Subjt:  MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATV

Query:  NIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE
        NIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE
Subjt:  NIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE

XP_022138928.1 protein LATERAL ROOT PRIMORDIUM 1 [Momordica charantia]2.5e-6089.51Show/hide
Query:  MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAA-----ASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELA
        MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQS AAAAA     ASTSNATTPRSFET+S+HQDASFKKSLPG VRAPAVFRCHRVTAISSGEGELA
Subjt:  MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAA-----ASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELA

Query:  YQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE
        YQATVNIGGHVFKGFLYDQG DDKN FPS+SHLHL+SGNHH +
Subjt:  YQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE

XP_038892899.1 protein LATERAL ROOT PRIMORDIUM 1 [Benincasa hispida]6.9e-6697.83Show/hide
Query:  MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATV
        MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQS AAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAI+SGEGELAYQATV
Subjt:  MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATV

Query:  NIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE
        NIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNHHR+
Subjt:  NIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE

TrEMBL top hitse value%identityAlignment
A0A0A0KWX6 Uncharacterized protein2.3e-67100Show/hide
Query:  MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATV
        MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATV
Subjt:  MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATV

Query:  NIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE
        NIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE
Subjt:  NIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE

A0A1S3BFS5 protein LATERAL ROOT PRIMORDIUM 12.3e-67100Show/hide
Query:  MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATV
        MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATV
Subjt:  MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATV

Query:  NIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE
        NIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE
Subjt:  NIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE

A0A5D3CCT8 Protein LATERAL ROOT PRIMORDIUM 13.1e-6489.61Show/hide
Query:  MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQ----------------DASFKKSLPGHVRAPAVFRCHRV
        MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQ                DASFKKSLPGHVRAPAVFRCHRV
Subjt:  MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQ----------------DASFKKSLPGHVRAPAVFRCHRV

Query:  TAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE
        TAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE
Subjt:  TAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE

A0A6J1CEG6 protein LATERAL ROOT PRIMORDIUM 11.2e-6089.51Show/hide
Query:  MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAA-----ASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELA
        MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQS AAAAA     ASTSNATTPRSFET+S+HQDASFKKSLPG VRAPAVFRCHRVTAISSGEGELA
Subjt:  MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAA-----ASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELA

Query:  YQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE
        YQATVNIGGHVFKGFLYDQG DDKN FPS+SHLHL+SGNHH +
Subjt:  YQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE

A0A6J1GXY1 protein LATERAL ROOT PRIMORDIUM 1-like6.9e-5687.68Show/hide
Query:  MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATV
        MLVVMDGVAT+    GSSGSSSAGAKRP+VLIPSQ+ AAAAAASTSNATTPRSFETTSSHQDASFKKSLPG V+APAVF+CHRVTAISSGEGEL YQATV
Subjt:  MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATV

Query:  NIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE
        NIGGHVFKGFLYDQGAD KNA PSISHLHL+SGNH R+
Subjt:  NIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE

SwissProt top hitse value%identityAlignment
K4B6C9 Protein EXPRESSION OF TERPENOIDS 12.1e-0956Show/hide
Query:  PGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK
        P  VR  AVF+C ++++I   E +LAYQA V+IGGHVFKG LYDQG + +
Subjt:  PGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK

Q94CK9 Protein LATERAL ROOT PRIMORDIUM 12.7e-2553.49Show/hide
Query:  ASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATT-PRSFETTSSHQD-ASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFK
        A+   GSS S+S+G K+PR++   Q     A + TS + T P+SFET+SS QD    +++ PG VRA AVF+C RVTA+  G+ E AYQA V IGGHVFK
Subjt:  ASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATT-PRSFETTSSHQD-ASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFK

Query:  GFLYDQGADDKNAFPSISHLHL-DSGNHH
        GFLYDQG + K  FPS+S LHL  S N+H
Subjt:  GFLYDQGADDKNAFPSISHLHL-DSGNHH

Q9FXH7 Protein SHI RELATED SEQUENCE 73.3e-1050Show/hide
Query:  LPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNHH
        LP  + +PAVFRC RV++I   + E AYQ  V+IGGHVFKG LYDQG    +   S S     S  HH
Subjt:  LPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNHH

Q9LQZ5 Protein SHI RELATED SEQUENCE 51.6e-0946.15Show/hide
Query:  SSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGE--LAYQATVNIGGHVFKGFLYDQGADDKN
        +S+      + LP  V +PA+FRC RV++I   E +   AYQ  VNIGGH+FKG LYDQG + ++
Subjt:  SSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGE--LAYQATVNIGGHVFKGFLYDQGADDKN

Q9M2U4 Protein SHI RELATED SEQUENCE 68.3e-1442.59Show/hide
Query:  SSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGADD
        SSS   ++ ++ I  QS+   +              TT+S Q+  F++ LPG + APAVF+  RVTAIS+ E  E+ YQATV I GH+FKGFL+  G D 
Subjt:  SSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGADD

Query:  KNAFPSIS
          AFP +S
Subjt:  KNAFPSIS

Arabidopsis top hitse value%identityAlignment
AT3G54430.1 SHI-related sequence 65.9e-1542.59Show/hide
Query:  SSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGADD
        SSS   ++ ++ I  QS+   +              TT+S Q+  F++ LPG + APAVF+  RVTAIS+ E  E+ YQATV I GH+FKGFL+  G D 
Subjt:  SSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGADD

Query:  KNAFPSIS
          AFP +S
Subjt:  KNAFPSIS

AT4G36260.1 Lateral root primordium (LRP) protein-related4.4e-1040.37Show/hide
Query:  TASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAI-SSGEGELAYQATVNIGGHVFK
        + SG GG SGS  AG       IP +        ++S++  P S        +ASF    PG V + A+FRC +++ +   G+G+ AYQ TVNIGGH+FK
Subjt:  TASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAI-SSGEGELAYQATVNIGGHVFK

Query:  GFLYDQGAD
        G LYDQG +
Subjt:  GFLYDQGAD

AT5G12330.1 Lateral root primordium (LRP) protein-related1.9e-2653.49Show/hide
Query:  ASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATT-PRSFETTSSHQD-ASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFK
        A+   GSS S+S+G K+PR++   Q     A + TS + T P+SFET+SS QD    +++ PG VRA AVF+C RVTA+  G+ E AYQA V IGGHVFK
Subjt:  ASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATT-PRSFETTSSHQD-ASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFK

Query:  GFLYDQGADDKNAFPSISHLHL-DSGNHH
        GFLYDQG + K  FPS+S LHL  S N+H
Subjt:  GFLYDQGADDKNAFPSISHLHL-DSGNHH

AT5G12330.2 Lateral root primordium (LRP) protein-related1.9e-2653.49Show/hide
Query:  ASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATT-PRSFETTSSHQD-ASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFK
        A+   GSS S+S+G K+PR++   Q     A + TS + T P+SFET+SS QD    +++ PG VRA AVF+C RVTA+  G+ E AYQA V IGGHVFK
Subjt:  ASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATT-PRSFETTSSHQD-ASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFK

Query:  GFLYDQGADDKNAFPSISHLHL-DSGNHH
        GFLYDQG + K  FPS+S LHL  S N+H
Subjt:  GFLYDQGADDKNAFPSISHLHL-DSGNHH

AT5G12330.4 Lateral root primordium (LRP) protein-related1.9e-2653.49Show/hide
Query:  ASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATT-PRSFETTSSHQD-ASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFK
        A+   GSS S+S+G K+PR++   Q     A + TS + T P+SFET+SS QD    +++ PG VRA AVF+C RVTA+  G+ E AYQA V IGGHVFK
Subjt:  ASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATT-PRSFETTSSHQD-ASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFK

Query:  GFLYDQGADDKNAFPSISHLHL-DSGNHH
        GFLYDQG + K  FPS+S LHL  S N+H
Subjt:  GFLYDQGADDKNAFPSISHLHL-DSGNHH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGTGGTTATGGACGGCGTTGCCACTGCTAGTGGCGACGGAGGGTCTTCCGGTTCTTCTTCTGCTGGTGCTAAAAGGCCTAGAGTTTTGATTCCTTCACAGAGTGC
TGCCGCGGCCGCCGCTGCTTCCACTTCCAATGCCACAACTCCCCGGAGTTTTGAAACAACCTCTAGCCATCAAGATGCAAGCTTCAAGAAGTCATTACCAGGGCATGTTC
GAGCTCCAGCCGTGTTCAGGTGCCATAGAGTGACTGCCATTAGCAGTGGTGAAGGTGAGTTAGCTTACCAAGCAACAGTCAATATTGGTGGTCATGTCTTCAAAGGCTTC
CTCTATGATCAAGGAGCTGATGACAAAAATGCATTCCCATCTATTTCACATCTCCATTTGGACAGTGGTAACCACCACAGGGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGGTGGTTATGGACGGCGTTGCCACTGCTAGTGGCGACGGAGGGTCTTCCGGTTCTTCTTCTGCTGGTGCTAAAAGGCCTAGAGTTTTGATTCCTTCACAGAGTGC
TGCCGCGGCCGCCGCTGCTTCCACTTCCAATGCCACAACTCCCCGGAGTTTTGAAACAACCTCTAGCCATCAAGATGCAAGCTTCAAGAAGTCATTACCAGGGCATGTTC
GAGCTCCAGCCGTGTTCAGGTGCCATAGAGTGACTGCCATTAGCAGTGGTGAAGGTGAGTTAGCTTACCAAGCAACAGTCAATATTGGTGGTCATGTCTTCAAAGGCTTC
CTCTATGATCAAGGAGCTGATGACAAAAATGCATTCCCATCTATTTCACATCTCCATTTGGACAGTGGTAACCACCACAGGGAATAGACATTCCTTCTCTTCATTCTTCT
CCAATTCTCCCTCTGATCACTCTTCTCCTCCTGAAAACTCGGTCTTGACTACTTGAAAAAATATGATATCTTTGCTAGATTTCAGAGGTCTGTTATGTTATCTGTAAGTT
TCATATAGTTGTTATCATGGTGGTAATGCAATGAATCTTGCACTAAATAGAACACAAAAGTGCATAGTTGTAATAGGAATTTTCTGTTCTAGCCTTAAGCTGGGTTTAGT
GTAAGATTTATCAAGTTCAAAGATAGTTGGATATTGATCTTCTGTATATTGCTTAGAAGATGTGTAACTTTCATCTATCCAAATATCTGCTGAAACAAGAGTTAGCTTGT
CTTATTTCATAGCAGCTGTATTATATGTTGGGATACAAGAGTTCAGTCTCTTCTTTTACTGTCTATCTCAAAGAGTTTTACGAAACAAATGAAATCGTTCATCTGAGTAA
GTTCTTGCGAAATTCCACGATGGTGAAACAGGCAAAATGGAGAACCAGATATAAGTAAAGTCGGGACCCCACATGACACGAACAATATAAGCAGAAGATGAAAGTTAGTG
AAGCGTAGTTCCATTCTCATCACATTTTTAGCAAAAAAGAAAGCCAGAGAGCAATGGAGATGAACACTAAAAACTGGAAAGTGGGAAGGAAAGAGCAAAGCAGTGTAAGA
ATTACCAAAACTTGAGAAGAGTTAAAAGAGAAAAAGAAGCATTGATGATTGATGGAGAAGAGAAAAGGATGAATATGAAAACAGTACCAATTGAGACTCAGTTGTTAAAG
GAGAGGGATTTTCTTCTTCCCAGATGACATTAAGAAAAAGGTATGCATTAAAAGGGATGAACAAAATGAATAGGTGAGACCAATAACCCCC
Protein sequenceShow/hide protein sequence
MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGF
LYDQGADDKNAFPSISHLHLDSGNHHRE