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CSPI05G27840 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G27840
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description9-cis-epoxycarotenoid dioxygenase NCED6
Genome locationChr5:26288753..26289298
RNA-Seq ExpressionCSPI05G27840
SyntenyCSPI05G27840
Gene Ontology termsGO:0051213 - dioxygenase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065443.1 9-cis-epoxycarotenoid dioxygenase NCED6 [Cucumis melo var. makuwa]3.0e-1287.04Show/hide
Query:  LVAIVAKLEDLSSKMAINVGMLKKKLGMTHSELSLVKRVSANSFSKKNASSKAQ
        LVAIVAKLED SSKMAINVGMLKKKL MTHSELSLVKR SANS SK NASSK +
Subjt:  LVAIVAKLEDLSSKMAINVGMLKKKLGMTHSELSLVKRVSANSFSKKNASSKAQ
TrEMBL top hitse value%identityAlignment
A0A0A0KV72 Uncharacterized protein5.8e-0992.5Show/hide
Query:  MAINVGMLKKKLGMTHSELSLVKRVSANSFSKKNASSKAQ
        MAINVGMLKKKLGMTHS+LSLVKRVSANSFSKKNASSK +
Subjt:  MAINVGMLKKKLGMTHSELSLVKRVSANSFSKKNASSKAQ
A0A5A7VB88 9-cis-epoxycarotenoid dioxygenase NCED61.5e-1287.04Show/hide
Query:  LVAIVAKLEDLSSKMAINVGMLKKKLGMTHSELSLVKRVSANSFSKKNASSKAQ
        LVAIVAKLED SSKMAINVGMLKKKL MTHSELSLVKR SANS SK NASSK +
Subjt:  LVAIVAKLEDLSSKMAINVGMLKKKLGMTHSELSLVKRVSANSFSKKNASSKAQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCAAGGCAAAACTCCATATCGTAAGAAGGCAGCCTAGAAAACTTCATCAACCAAATGAGCAAGAGTTGGTAGCCATTGTTGCCAAGTTGGAGGACTTATCCTCCAA
GATGGCCATCAATGTCGGGATGTTGAAGAAAAAACTTGGGATGACACATAGCGAACTTTCTTTAGTAAAAAGGGTATCGGCAAACTCGTTTTCTAAGAAGAATGCTAGTT
CCAAAGCGCAAGGCGCCCACTTGGGGCTTATTTGTGAGGAGGCGCAGCGAATTATAAAAGGCCCATATTAG
mRNA sequenceShow/hide mRNA sequence
CTCTTGTAATATTATTATGTGGATATTCTCCTCGGTGTCTATATTATTATTTCCTTATTGGGATTGTTGGTCTGTCTTCTATATTAGAAAACCTTATTGGGGTTGTGTAT
GGTTCTGGCGGGAAATGTGTGGTTGAGATAGCAAAGATGCTCAAGGCAAAACTCCATATCGTAAGAAGGCAGCCTAGAAAACTTCATCAACCAAATGAGCAAGAGTTGGT
AGCCATTGTTGCCAAGTTGGAGGACTTATCCTCCAAGATGGCCATCAATGTCGGGATGTTGAAGAAAAAACTTGGGATGACACATAGCGAACTTTCTTTAGTAAAAAGGG
TATCGGCAAACTCGTTTTCTAAGAAGAATGCTAGTTCCAAAGCGCAAGGCGCCCACTTGGGGCTTATTTGTGAGGAGGCGCAGCGAATTATAAAAGGCCCATATTAG
Protein sequenceShow/hide protein sequence
MLKAKLHIVRRQPRKLHQPNEQELVAIVAKLEDLSSKMAINVGMLKKKLGMTHSELSLVKRVSANSFSKKNASSKAQGAHLGLICEEAQRIIKGPY