CuGenDBv2

Gene ID	CSPI05G27980
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Beta-galactosidase
Genome location	Chr5:26451468..26452597
RNA-Seq Expression	CSPI05G27980
Synteny	CSPI05G27980
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0000166 - nucleotide binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0016874 - ligase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0031941.1 Beta-galactosidase [Cucumis melo var. makuwa]

1.6e-46

68.35

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Query:  MPSRVLHFQTPLDCLKESYLSTHLIPDVPLWVFDCTTYVHSHGPNQTKFTPTTQACVFVGYLLHQRGYKCFHPSSCKYFVTMNVNFIEDGPFFLVSLLQG
        MPSR+LH QTPLDCLKESY ST L+ +VPL VF CT YVH+ GPNQTKFTP  QACVFVGY LHQ GYKCFHP S KYFVTM+V F E+ P+F VS LQG
Subjt:  MPSRVLHFQTPLDCLKESYLSTHLIPDVPLWVFDCTTYVHSHGPNQTKFTPTTQACVFVGYLLHQRGYKCFHPSSCKYFVTMNVNFIEDGPFFLVSLLQG

Query:  ENMSEESNYMLPLESSYPTVVTLPDPSPHSTIIPTNQVP
        EN+SEESN     E   PT++T+ D  PH  I+PTNQVP
Subjt:  ENMSEESNYMLPLESSYPTVVTLPDPSPHSTIIPTNQVP

KAA0050709.1 Beta-galactosidase [Cucumis melo var. makuwa]

1.9e-47

69.06

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Query:  MPSRVLHFQTPLDCLKESYLSTHLIPDVPLWVFDCTTYVHSHGPNQTKFTPTTQACVFVGYLLHQRGYKCFHPSSCKYFVTMNVNFIEDGPFFLVSLLQG
        MPSR+LH QTPLDCLKESY STHL+  VPL VF CT YV++ GPNQTKFTP  QACVFVGYLLHQRGYKCFHP S KYFVTM+V F E+ P+F VS LQG
Subjt:  MPSRVLHFQTPLDCLKESYLSTHLIPDVPLWVFDCTTYVHSHGPNQTKFTPTTQACVFVGYLLHQRGYKCFHPSSCKYFVTMNVNFIEDGPFFLVSLLQG

Query:  ENMSEESNYMLPLESSYPTVVTLPDPSPHSTIIPTNQVP
        EN+SEESN         PT +T+ D  PH  I+PTNQVP
Subjt:  ENMSEESNYMLPLESSYPTVVTLPDPSPHSTIIPTNQVP

KAA0060782.1 reverse transcriptase [Cucumis melo var. makuwa]

3.8e-48

68.79

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Query:  MPSRVLHFQTPLDCLKESYLSTHLIPDVPLWVFDCTTYVHSHGPNQTKFTPTTQACVFVGYLLHQRGYKCFHPSSCKYFVTMNVNFIEDGPFFLVSLLQG
        MPSRVLH QTPL+CLKESY ST LI D+PL VF CT YVH+HGPN +K TP  QACVFVGY LHQ GYKCFHPSS K FV+M+V F+ED PFF VS LQG
Subjt:  MPSRVLHFQTPLDCLKESYLSTHLIPDVPLWVFDCTTYVHSHGPNQTKFTPTTQACVFVGYLLHQRGYKCFHPSSCKYFVTMNVNFIEDGPFFLVSLLQG

Query:  ENMSEE--SNYMLPLESSYPTVVTLPDPSPHSTIIPTNQVP
        E+ SEE  SN+++ LES+ PT+VT+P P  H T++PTNQVP
Subjt:  ENMSEE--SNYMLPLESSYPTVVTLPDPSPHSTIIPTNQVP

KAA0067540.1 Beta-galactosidase [Cucumis melo var. makuwa]

9.4e-47

69.06

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Query:  MPSRVLHFQTPLDCLKESYLSTHLIPDVPLWVFDCTTYVHSHGPNQTKFTPTTQACVFVGYLLHQRGYKCFHPSSCKYFVTMNVNFIEDGPFFLVSLLQG
        MPSR+LH QTPLDCLKESY ST L+ +VPL VF CT YVH+ GPNQTKFTP  QACVFVGY LHQRGYKCFHP S KYFVTM+V F E+ P+F VS LQG
Subjt:  MPSRVLHFQTPLDCLKESYLSTHLIPDVPLWVFDCTTYVHSHGPNQTKFTPTTQACVFVGYLLHQRGYKCFHPSSCKYFVTMNVNFIEDGPFFLVSLLQG

Query:  ENMSEESNYMLPLESSYPTVVTLPDPSPHSTIIPTNQVP
        EN+SEESN     E   PT +T+ D  PH  I+PTNQVP
Subjt:  ENMSEESNYMLPLESSYPTVVTLPDPSPHSTIIPTNQVP

TYJ99952.1 Beta-galactosidase [Cucumis melo var. makuwa]

1.6e-46

68.35

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Query:  MPSRVLHFQTPLDCLKESYLSTHLIPDVPLWVFDCTTYVHSHGPNQTKFTPTTQACVFVGYLLHQRGYKCFHPSSCKYFVTMNVNFIEDGPFFLVSLLQG
        MPSR+LH QTPLDCLKESY ST L+ +VPL VF CT YVH+ GPNQTKFTP  QACVFVGY LHQ GYKCFHP S KYFVTM+V F E+ P+F VS LQG
Subjt:  MPSRVLHFQTPLDCLKESYLSTHLIPDVPLWVFDCTTYVHSHGPNQTKFTPTTQACVFVGYLLHQRGYKCFHPSSCKYFVTMNVNFIEDGPFFLVSLLQG

Query:  ENMSEESNYMLPLESSYPTVVTLPDPSPHSTIIPTNQVP
        EN+SEESN     E   PT++T+ D  PH  I+PTNQVP
Subjt:  ENMSEESNYMLPLESSYPTVVTLPDPSPHSTIIPTNQVP

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UB18 Beta-galactosidase

9.2e-48

69.06

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Query:  MPSRVLHFQTPLDCLKESYLSTHLIPDVPLWVFDCTTYVHSHGPNQTKFTPTTQACVFVGYLLHQRGYKCFHPSSCKYFVTMNVNFIEDGPFFLVSLLQG
        MPSR+LH QTPLDCLKESY STHL+  VPL VF CT YV++ GPNQTKFTP  QACVFVGYLLHQRGYKCFHP S KYFVTM+V F E+ P+F VS LQG
Subjt:  MPSRVLHFQTPLDCLKESYLSTHLIPDVPLWVFDCTTYVHSHGPNQTKFTPTTQACVFVGYLLHQRGYKCFHPSSCKYFVTMNVNFIEDGPFFLVSLLQG

Query:  ENMSEESNYMLPLESSYPTVVTLPDPSPHSTIIPTNQVP
        EN+SEESN         PT +T+ D  PH  I+PTNQVP
Subjt:  ENMSEESNYMLPLESSYPTVVTLPDPSPHSTIIPTNQVP

A0A5A7UY25 Reverse transcriptase

1.8e-48

68.79

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Query:  MPSRVLHFQTPLDCLKESYLSTHLIPDVPLWVFDCTTYVHSHGPNQTKFTPTTQACVFVGYLLHQRGYKCFHPSSCKYFVTMNVNFIEDGPFFLVSLLQG
        MPSRVLH QTPL+CLKESY ST LI D+PL VF CT YVH+HGPN +K TP  QACVFVGY LHQ GYKCFHPSS K FV+M+V F+ED PFF VS LQG
Subjt:  MPSRVLHFQTPLDCLKESYLSTHLIPDVPLWVFDCTTYVHSHGPNQTKFTPTTQACVFVGYLLHQRGYKCFHPSSCKYFVTMNVNFIEDGPFFLVSLLQG

Query:  ENMSEE--SNYMLPLESSYPTVVTLPDPSPHSTIIPTNQVP
        E+ SEE  SN+++ LES+ PT+VT+P P  H T++PTNQVP
Subjt:  ENMSEE--SNYMLPLESSYPTVVTLPDPSPHSTIIPTNQVP

A0A5A7VK49 Beta-galactosidase

4.5e-47

69.06

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Query:  MPSRVLHFQTPLDCLKESYLSTHLIPDVPLWVFDCTTYVHSHGPNQTKFTPTTQACVFVGYLLHQRGYKCFHPSSCKYFVTMNVNFIEDGPFFLVSLLQG
        MPSR+LH QTPLDCLKESY ST L+ +VPL VF CT YVH+ GPNQTKFTP  QACVFVGY LHQRGYKCFHP S KYFVTM+V F E+ P+F VS LQG
Subjt:  MPSRVLHFQTPLDCLKESYLSTHLIPDVPLWVFDCTTYVHSHGPNQTKFTPTTQACVFVGYLLHQRGYKCFHPSSCKYFVTMNVNFIEDGPFFLVSLLQG

Query:  ENMSEESNYMLPLESSYPTVVTLPDPSPHSTIIPTNQVP
        EN+SEESN     E   PT +T+ D  PH  I+PTNQVP
Subjt:  ENMSEESNYMLPLESSYPTVVTLPDPSPHSTIIPTNQVP

A0A5D3BJK7 Beta-galactosidase

7.7e-47

68.35

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Query:  MPSRVLHFQTPLDCLKESYLSTHLIPDVPLWVFDCTTYVHSHGPNQTKFTPTTQACVFVGYLLHQRGYKCFHPSSCKYFVTMNVNFIEDGPFFLVSLLQG
        MPSR+LH QTPLDCLKESY ST L+ +VPL VF CT YVH+ GPNQTKFTP  QACVFVGY LHQ GYKCFHP S KYFVTM+V F E+ P+F VS LQG
Subjt:  MPSRVLHFQTPLDCLKESYLSTHLIPDVPLWVFDCTTYVHSHGPNQTKFTPTTQACVFVGYLLHQRGYKCFHPSSCKYFVTMNVNFIEDGPFFLVSLLQG

Query:  ENMSEESNYMLPLESSYPTVVTLPDPSPHSTIIPTNQVP
        EN+SEESN     E   PT++T+ D  PH  I+PTNQVP
Subjt:  ENMSEESNYMLPLESSYPTVVTLPDPSPHSTIIPTNQVP

A0A5D3C4T4 Beta-galactosidase

7.7e-47

68.35

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Query:  MPSRVLHFQTPLDCLKESYLSTHLIPDVPLWVFDCTTYVHSHGPNQTKFTPTTQACVFVGYLLHQRGYKCFHPSSCKYFVTMNVNFIEDGPFFLVSLLQG
        MPSR+LH QTPLDCLKESY ST L+ +VPL VF CT YVH+ GPNQTKFTP  QACVFVGY LHQ GYKCFHP S KYFVTM+V F E+ P+F VS LQG
Subjt:  MPSRVLHFQTPLDCLKESYLSTHLIPDVPLWVFDCTTYVHSHGPNQTKFTPTTQACVFVGYLLHQRGYKCFHPSSCKYFVTMNVNFIEDGPFFLVSLLQG

Query:  ENMSEESNYMLPLESSYPTVVTLPDPSPHSTIIPTNQVP
        EN+SEESN     E   PT++T+ D  PH  I+PTNQVP
Subjt:  ENMSEESNYMLPLESSYPTVVTLPDPSPHSTIIPTNQVP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCCTTCCCGTGTCCTTCACTTCCAGACACCGTTAGATTGCCTTAAAGAATCTTATCTCTCCACTCATCTCATCCCTGATGTTCCCCTTTGGGTCTTCGACTGCACTAC
CTATGTCCATAGCCATGGTCCTAACCAAACTAAATTTACCCCTACGACTCAGGCTTGCGTGTTTGTTGGATATCTTCTACACCAAAGAGGCTATAAATGCTTTCATCCAT
CTTCATGTAAGTACTTTGTTACCATGAATGTCAACTTTATTGAAGATGGTCCTTTTTTTCTCGTTAGCCTACTTCAGGGAGAGAATATGAGTGAAGAATCTAACTATATG
CTTCCTTTAGAGTCTTCTTATCCTACTGTGGTTACCCTACCTGACCCTAGCCCTCACAGTACAATCATACCAACAAATCAAGTTCCTTGA

mRNA sequence

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GTTGTGGCATTTCCATTTAGGCCATCCCAACTTTAAATATATGAAATACCTATTTCCTCATCTTTTTTTCAAAGTTGATGTTTCATGCTTATCTTGTGATGTATGCATGC
AAGCTAAACAACACCGAGTTTCGTTTCCTTCGCAACCCTATAAGTCAACCCAACCTTTTACTCTTGTCCATAGTGATGTTTGGGGATCGTCCAAGGTCACTACCTCCTCT
AGAAAACGATGGTTTGTGACCTTTATTGATGACCCTACTTGTCTTACTTGGGTTTTCCTGATCTCCAACAAATCCGAAGTTACCTCCACATTTTGAGATTTCTATCACAC
CATAGAAACGCGATTCAATACAAAGATTGCAATCTTGCGAAGCTCCATGAGTTCTTATCCTCTAAAGGAATTGTTCACCAAATTTCTTGTGCTTACACCCCTAACAAAAT
GAGGTTGCTGAACGAAAAAATCGTCATCTTTTGAAAGTTGCTCGTTCCCTTAATGTGTCCACGTCTCTTCCTTCATATCCTTGGGGTGATGTCATTCTCACTGCCGCTCA
TCTCATCAACCGCATGCCTTCCCGTGTCCTTCACTTCCAGACACCGTTAGATTGCCTTAAAGAATCTTATCTCTCCACTCATCTCATCCCTGATGTTCCCCTTTGGGTCT
TCGACTGCACTACCTATGTCCATAGCCATGGTCCTAACCAAACTAAATTTACCCCTACGACTCAGGCTTGCGTGTTTGTTGGATATCTTCTACACCAAAGAGGCTATAAA
TGCTTTCATCCATCTTCATGTAAGTACTTTGTTACCATGAATGTCAACTTTATTGAAGATGGTCCTTTTTTTCTCGTTAGCCTACTTCAGGGAGAGAATATGAGTGAAGA
ATCTAACTATATGCTTCCTTTAGAGTCTTCTTATCCTACTGTGGTTACCCTACCTGACCCTAGCCCTCACAGTACAATCATACCAACAAATCAAGTTCCTTGATAAATCC
ACTATAAGAGGAATCTCAGAAAGGAAGTTGAGTCTCCTATTGTTCATACGGCTCCAATCCAGGATCCTAAATCAATAAGAGATCAAGGCATGACTGATTCAATTAATTCA
CCTAGTAATATCAGTATTGATGAGGCCATG

Protein sequence

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MPSRVLHFQTPLDCLKESYLSTHLIPDVPLWVFDCTTYVHSHGPNQTKFTPTTQACVFVGYLLHQRGYKCFHPSSCKYFVTMNVNFIEDGPFFLVSLLQGENMSEESNYM
LPLESSYPTVVTLPDPSPHSTIIPTNQVP

CSPI05G27980 (gene) of Cucumber (PI 183967) v1 genome