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CSPI05G27990 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G27990
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionAP complex subunit sigma
Genome locationChr5:26456032..26456999
RNA-Seq ExpressionCSPI05G27990
SyntenyCSPI05G27990
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0006896 - Golgi to vacuole transport (biological process)
GO:0030123 - AP-3 adaptor complex (cellular component)
GO:0030659 - cytoplasmic vesicle membrane (cellular component)
InterPro domainsIPR000804 - Clathrin adaptor complex, small chain
IPR011012 - Longin-like domain superfamily
IPR016635 - Adaptor protein complex, sigma subunit
IPR022775 - AP complex, mu/sigma subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058373.1 AP-3 complex subunit sigma [Cucumis melo var. makuwa]1.5e-3595.18Show/hide
Query:  MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQ
        MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAEN+SNFVE ESIFG DS LVYKHFATLYFVLVFNSSENELAMLDLIQ
Subjt:  MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQ

KAG6603975.1 AP-3 complex subunit sigma, partial [Cucurbita argyrosperma subsp. sororia]3.4e-3576.36Show/hide
Query:  MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQVLLGTSSLVFVKF-RHS
        MNT+GKPRFAKFYDFQP+EKQQELIRSV+GVLCSRAENVSNFVE ESIFG DS LVYKHFATLYFV VFNSSENELAMLDLIQV + T    F       
Subjt:  MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQVLLGTSSLVFVKF-RHS

Query:  LVHNYDYQRS
        LV NY    S
Subjt:  LVHNYDYQRS

XP_008452384.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo]8.0e-3779.09Show/hide
Query:  MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQVLLGTSSLVFVKF-RHS
        MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAEN+SNFVE ESIFG DS LVYKHFATLYFVLVFNSSENELAMLDLIQV + T    F       
Subjt:  MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQVLLGTSSLVFVKF-RHS

Query:  LVHNYDYQRS
        LV NY    S
Subjt:  LVHNYDYQRS

XP_011655957.1 AP-3 complex subunit sigma [Cucumis sativus]6.5e-3985.71Show/hide
Query:  MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQVLLGTSSLVFVKF-RHS
        MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQV + T    F       
Subjt:  MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQVLLGTSSLVFVKF-RHS

Query:  LVHNY
        LV NY
Subjt:  LVHNY

XP_038893159.1 AP-3 complex subunit sigma [Benincasa hispida]1.5e-3580Show/hide
Query:  MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQVLLGTSSLVFVKF-RHS
        MNT+GKPRFAKFY+FQP+EKQQELIRSVYGVLCSRAENVSNFVE ESIFG DS LVYKHFATLYFVLVFNSSENELAMLDLIQV + T    F       
Subjt:  MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQVLLGTSSLVFVKF-RHS

Query:  LVHNY
        LV NY
Subjt:  LVHNY

TrEMBL top hitse value%identityAlignment
A0A0A0KRY4 AP complex subunit sigma7.0e-3993.48Show/hide
Query:  MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQVLLGTSSLV
        MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQ   GTS+++
Subjt:  MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQVLLGTSSLV

A0A1S3BT37 AP complex subunit sigma3.9e-3779.09Show/hide
Query:  MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQVLLGTSSLVFVKF-RHS
        MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAEN+SNFVE ESIFG DS LVYKHFATLYFVLVFNSSENELAMLDLIQV + T    F       
Subjt:  MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQVLLGTSSLVFVKF-RHS

Query:  LVHNYDYQRS
        LV NY    S
Subjt:  LVHNYDYQRS

A0A5A7UR76 AP-3 complex subunit sigma7.3e-3695.18Show/hide
Query:  MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQ
        MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAEN+SNFVE ESIFG DS LVYKHFATLYFVLVFNSSENELAMLDLIQ
Subjt:  MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQ

A0A6J1GFL2 AP complex subunit sigma8.1e-3583.87Show/hide
Query:  MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQVLLGTSSLVF
        MNT+GKPRFAKFYDFQP+EKQQELIRSV+GVLCSRAEN+SNFVE ESIFG DS LVYKHFATLYFV VFNSSENELAMLDLIQV + T    F
Subjt:  MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQVLLGTSSLVF

A0A6J1IUE1 AP complex subunit sigma3.6e-3575.45Show/hide
Query:  MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQVLLGTSSLVFVKF-RHS
        MNT+GKPRFAKFYDFQP+EKQQELIRSV+GVLCSRAENVSNFVE ESIFG DS +VYKHFATLYFV VFNSSENELAMLDLIQV + T    F       
Subjt:  MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQVLLGTSSLVFVKF-RHS

Query:  LVHNYDYQRS
        LV NY    S
Subjt:  LVHNYDYQRS

SwissProt top hitse value%identityAlignment
P59780 AP-3 complex subunit sigma-22.3e-1545.16Show/hide
Query:  NTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIF-GLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQVLLGTSSLVF
        N  GKPR  +FY   P E QQ+++R  + ++  R +N+ NF+E  S+  G D  L+Y+H+ATLYFV   +SSE+EL +LDLIQV + T    F
Subjt:  NTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIF-GLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQVLLGTSSLVF

Q1JQA3 AP-3 complex subunit sigma-22.3e-1545.16Show/hide
Query:  NTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIF-GLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQVLLGTSSLVF
        N  GKPR  +FY   P E QQ+++R  + ++  R +N+ NF+E  S+  G D  L+Y+H+ATLYFV   +SSE+EL +LDLIQV + T    F
Subjt:  NTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIF-GLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQVLLGTSSLVF

Q5RDP9 AP-3 complex subunit sigma-22.3e-1545.16Show/hide
Query:  NTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIF-GLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQVLLGTSSLVF
        N  GKPR  +FY   P E QQ+++R  + ++  R +N+ NF+E  S+  G D  L+Y+H+ATLYFV   +SSE+EL +LDLIQV + T    F
Subjt:  NTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIF-GLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQVLLGTSSLVF

Q8BSZ2 AP-3 complex subunit sigma-22.3e-1545.16Show/hide
Query:  NTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIF-GLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQVLLGTSSLVF
        N  GKPR  +FY   P E QQ+++R  + ++  R +N+ NF+E  S+  G D  L+Y+H+ATLYFV   +SSE+EL +LDLIQV + T    F
Subjt:  NTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIF-GLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQVLLGTSSLVF

Q8VZ37 AP-3 complex subunit sigma2.5e-3366.97Show/hide
Query:  MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQVLLGTSSLVF-------
        MNT+GKPR AKFYD+ P+EKQQELIR V+ VLCSR ENVSNF+E ES+FG DS LVYKH+ATLYFVLVF+ SENELAMLDLIQVL+ T    F       
Subjt:  MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQVLLGTSSLVF-------

Query:  VKFRHSLVH
        + F +S +H
Subjt:  VKFRHSLVH

Arabidopsis top hitse value%identityAlignment
AT2G17380.1 associated protein 197.0e-0730.49Show/hide
Query:  MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLI
        ++ +GK R  K+Y     +++ ++IR + GV+ +R   + NF+E          +VYK +A+LYF +  + ++NEL +L++I
Subjt:  MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLI

AT2G19790.1 SNARE-like superfamily protein4.6e-0628.41Show/hide
Query:  MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQVLLGT
        +N +G+ R A++Y++  +E+++ L   +     +R +   +FVE  +       +VY+ +A+L+F++  +  ENELA+L+ I +L+ T
Subjt:  MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQVLLGT

AT3G50860.1 Clathrin adaptor complex small chain family protein1.8e-3466.97Show/hide
Query:  MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQVLLGTSSLVF-------
        MNT+GKPR AKFYD+ P+EKQQELIR V+ VLCSR ENVSNF+E ES+FG DS LVYKH+ATLYFVLVF+ SENELAMLDLIQVL+ T    F       
Subjt:  MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQVLLGTSSLVF-------

Query:  VKFRHSLVH
        + F +S +H
Subjt:  VKFRHSLVH

AT4G35410.1 Clathrin adaptor complex small chain family protein7.0e-0731.71Show/hide
Query:  MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLI
        ++ +GK R  K+Y     +++ ++IR + GV+ +R   + NFVE          +VYK +A+LYF +  +  +NEL +L++I
Subjt:  MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLI

AT4G35410.2 Clathrin adaptor complex small chain family protein7.0e-0731.71Show/hide
Query:  MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLI
        ++ +GK R  K+Y     +++ ++IR + GV+ +R   + NFVE          +VYK +A+LYF +  +  +NEL +L++I
Subjt:  MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATACTGAGGGCAAGCCTCGGTTTGCTAAGTTCTACGATTTTCAGCCCATAGAAAAGCAGCAGGAGCTCATTCGCAGCGTCTATGGAGTACTCTGTAGTCGAGCTGA
GAACGTCAGCAATTTCGTGGAGACTGAGTCCATCTTTGGTTTGGACTCGCATCTTGTTTACAAACACTTTGCAACCCTTTATTTTGTGCTTGTCTTTAACAGTTCTGAGA
ATGAACTTGCCATGCTTGACCTGATACAAGTACTCCTTGGTACCTCAAGTCTTGTATTTGTTAAGTTTAGGCATTCTTTAGTACATAATTACGATTACCAGAGGTCCAAG
GAAAGAAATGATGAAACATTTGGGATTCTCCAACTAAATAGACCTGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAATACTGAGGGCAAGCCTCGGTTTGCTAAGTTCTACGATTTTCAGCCCATAGAAAAGCAGCAGGAGCTCATTCGCAGCGTCTATGGAGTACTCTGTAGTCGAGCTGA
GAACGTCAGCAATTTCGTGGAGACTGAGTCCATCTTTGGTTTGGACTCGCATCTTGTTTACAAACACTTTGCAACCCTTTATTTTGTGCTTGTCTTTAACAGTTCTGAGA
ATGAACTTGCCATGCTTGACCTGATACAAGTACTCCTTGGTACCTCAAGTCTTGTATTTGTTAAGTTTAGGCATTCTTTAGTACATAATTACGATTACCAGAGGTCCAAG
GAAAGAAATGATGAAACATTTGGGATTCTCCAACTAAATAGACCTGAATAA
Protein sequenceShow/hide protein sequence
MNTEGKPRFAKFYDFQPIEKQQELIRSVYGVLCSRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQVLLGTSSLVFVKFRHSLVHNYDYQRSK
ERNDETFGILQLNRPE