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CSPI05G28060 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G28060
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionCCHC-type domain-containing protein
Genome locationChr5:26564585..26566872
RNA-Seq ExpressionCSPI05G28060
SyntenyCSPI05G28060
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034004.1 hypothetical protein E6C27_scaffold400G00700 [Cucumis melo var. makuwa]1.8e-1974.32Show/hide
Query:  LEFINLDEFIKKGDMMSKNKGDHFKTIKILFQKTKKCIKNLKIGVPLMMSCKKGQFLNKREDFDLSSMK-GENQ
        LEFI L E IKKGDMMS+N+ DHFKTIKI FQ+TKKCI NLKIGVPLMMSCKK  FL + + FDL+ MK GENQ
Subjt:  LEFINLDEFIKKGDMMSKNKGDHFKTIKILFQKTKKCIKNLKIGVPLMMSCKKGQFLNKREDFDLSSMK-GENQ
KAA0050434.1 uncharacterized protein E6C27_scaffold175G00240 [Cucumis melo var. makuwa]1.3e-1778.69Show/hide
Query:  LEFINLDEFIKKGDMMSKNKGDHFKTIKILFQKTKKCIKNLKIGVPLMMSCKKGQFLNKRE
        LEFI L E IKKGDMMS+N+G HFKTIKI+FQ+ KKCIKNLKIGVPLMMSCKKG FL + E
Subjt:  LEFINLDEFIKKGDMMSKNKGDHFKTIKILFQKTKKCIKNLKIGVPLMMSCKKGQFLNKRE
TrEMBL top hitse value%identityAlignment
A0A5A7SS23 Uncharacterized protein8.5e-2074.32Show/hide
Query:  LEFINLDEFIKKGDMMSKNKGDHFKTIKILFQKTKKCIKNLKIGVPLMMSCKKGQFLNKREDFDLSSMK-GENQ
        LEFI L E IKKGDMMS+N+ DHFKTIKI FQ+TKKCI NLKIGVPLMMSCKK  FL + + FDL+ MK GENQ
Subjt:  LEFINLDEFIKKGDMMSKNKGDHFKTIKILFQKTKKCIKNLKIGVPLMMSCKKGQFLNKREDFDLSSMK-GENQ
A0A5A7U5B9 CCHC-type domain-containing protein6.1e-1878.69Show/hide
Query:  LEFINLDEFIKKGDMMSKNKGDHFKTIKILFQKTKKCIKNLKIGVPLMMSCKKGQFLNKRE
        LEFI L E IKKGDMMS+N+G HFKTIKI+FQ+ KKCIKNLKIGVPLMMSCKKG FL + E
Subjt:  LEFINLDEFIKKGDMMSKNKGDHFKTIKILFQKTKKCIKNLKIGVPLMMSCKKGQFLNKRE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGAAGTTTTACAAAGGCTAGTGACATTAGCATCTCCTCAAAATGTTCATCAAGAACATCAAGAATTTGTTCATGATTACGAACAGCGTGGCATCTGTGAGCTGGA
ATTCATAAACCTGGACGAGTTTATCAAGAAAGGAGATATGATGTCCAAGAACAAAGGAGACCATTTCAAGACTATCAAGATCCTTTTCCAAAAAACCAAGAAATGTATCA
AGAATCTCAAGATTGGAGTTCCTCTGATGATGAGCTGCAAGAAAGGCCAGTTTTTAAACAAAAGAGAAGATTTTGACCTTAGTTCGATGAAAGGAGAGAACCAGCAGAAT
ACAAGATGA
mRNA sequenceShow/hide mRNA sequence
GCCAACCTAGGCTAAGGGTTTTCTTGATCGCCCAAAAGCCCCGTCCAGGTCAGTTCTTGCCAATTTTTAATATACCCTTATAATCCTAATAATATTCGTAATCTTATCCT
AATACCATTTCTATTCTCACAATTCCTTCTCCAATACTGCACCATTCTTCTCCACCTTGATATTAACGTATTCAGAATGTCAAATTGGAACAAATGAAACAAAACATTTT
CTATACAATGTTTATACTGATAATAAGTGCAGGATATATTCACTTGGCTAATCTGGTCATGAGTGCTAACTTCTCTCCCACACACAGAAAATCTAAATTCTAACCTACCT
TTCACTTGCATACTTCATAAATTTATATTAGCATGTGTCTGTGAGGCCCCAAATATGTTACACTTATTCGAGGGGAAGAAAGGAAATACACAGGACACGGATGAGGTTTG
GGAAGTGAACTGAGGAATCAGTTGTGGGGTCCACTCTCTCAAATGGTGCTGAGAATTCGCTTGTTATTTCGAGTTCCCTGTACTTGTTGTCTTTTCTGTGAACTTCTATT
TGCTTAAGCCTATCAACTATCCCAACAAGAGATCATCGACTCTGTTGATTTTGGGGTTGTGTGTTGCGTTTTACTGCTTGTAGGTGACTCAGAACTTAACAGTGTTCTTC
CCTAGGCCCAAACTAATTTCCTAATGCTATTTCTGGGGTAAAATTCCCCATTTCTCCTTGCCCTTCATACACTCTTACAAAGGATGGTTTAACACCAAGTTCTTCCACAA
TTTGCTTATGTGGTCAATTCCAACAATATAAGGTTGACTAAAATGTTTCTCAAAGAAGCAAAGATAGAATTATGACAAATGGCTGGCTTGGTTTTTGAAGAGTGTGATGT
AAACTCTACTGTTATATTTCAACTCTTCTGTTAGTTAAGCTACCTGTTATTTAATAGGCTTTAATTCATTGTTAGTTAACTACCTAGTTAGTTACTATGTAACCAACTAT
TTTCCCCATAAACAAAGTACATCCTCTCACTTTGAGAGGCAGAACATTCATTCAAAAATAAAACTCTTTGGTTTCACACCAATTGGTATCAGAGCACCATAAGCTCTCGG
GACCTTTGGCTGTCCGGCAAAACCAACCGGCAGCGACCTGCTTAAAATCAAGAGGCGGATGAAACACCCGTCCTTTCTCCAAGAACCACCTCGCAAAGCTTGCTGTCCTT
GAAGGCTTTGATTGAAGGATTACAAACAACAATGCAAGAAGTTTTACAAAGGCTAGTGACATTAGCATCTCCTCAAAATGTTCATCAAGAACATCAAGAATTTGTTCATG
ATTACGAACAGCGTGGCATCTGTGAGCTGGAATTCATAAACCTGGACGAGTTTATCAAGAAAGGAGATATGATGTCCAAGAACAAAGGAGACCATTTCAAGACTATCAAG
ATCCTTTTCCAAAAAACCAAGAAATGTATCAAGAATCTCAAGATTGGAGTTCCTCTGATGATGAGCTGCAAGAAAGGCCAGTTTTTAAACAAAAGAGAAGATTTTGACCT
TAGTTCGATGAAAGGAGAGAACCAGCAGAATACAAGATGAAAATTGATCTTTTGAGCTATCACAGTAAACGTAATATTGAGATTTTTCTTGATTGGTTGAAGAATACTGA
ATTTTTTTTCAATTATATGAATACTCCTGAGGTGAAGAAAGTACACTTAGTAGCATTGAAGCTGTAGGCTGGAGCATTGGCTTGGTGGGACCAACATGAGGTTAATAGGC
GAATTGGTGCTGCCCTCACCCAAGGAGGTCATCCGGTAGAATTCTTTAGTGAAAAATTGAGTCCTAGGCAAAATTGGAGCACCTATGAGCAGAAACTTCATGCACTTGTG
AGGGTCTTAAAGCAATGGGAGCACTACCTATTATCCAAAGAGTTTGTGCTGCTCACCGATCATTTCTCCTTGAAGTACCTCCAAGCCCAAAAAAACATTAACAAGATGCA
TGCCCGATGGGTATCTTATATCCAACGATTTGATTTCTTAATCAAGCATCAAGCCGACCAAGAAAAAAGAGTTGCTGATGCCTTAAGCAGAAAAGGGACTCTCCAAACTG
TGCTCTGAGCTGAAATTACAGCCTTTAACCATCTCTCGAAGCTATATGAGAATGATGAAGACTTTGGTGAGATTTGGAGTCATTGTACTGCTCATATCCATGATAGAGAT
TATCATTTGGTAGAAGGTTTTCTCTTTAAGGGAGATCAATTATGCATTCCCCATACTTTCTTAAGGGAAGCCCTTATAAAAGAAGCCC
Protein sequenceShow/hide protein sequence
MQEVLQRLVTLASPQNVHQEHQEFVHDYEQRGICELEFINLDEFIKKGDMMSKNKGDHFKTIKILFQKTKKCIKNLKIGVPLMMSCKKGQFLNKREDFDLSSMKGENQQN
TR