; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI05G28290 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G28290
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRNA ligase/cyclic nucleotide phosphodiesterase
Genome locationChr5:26769479..26771118
RNA-Seq ExpressionCSPI05G28290
SyntenyCSPI05G28290
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004142350.1 uncharacterized protein LOC101208638 [Cucumis sativus]2.2e-96100Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESIVKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESIVKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESIVKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
        FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
Subjt:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA

XP_022939795.1 uncharacterized protein LOC111445566 [Cucurbita moschata]1.0e-9396.72Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESIVKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PFLEPTKVESIVKNFASKQEPL LSLSSIGSLPSDNN+LFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESIVKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
        FQSQLCEAMRKEGIEIGEEYR GSWIPHC+VAQEVP+ARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
Subjt:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA

XP_022964210.1 uncharacterized protein LOC111464296 [Cucurbita moschata]1.0e-9396.72Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESIVKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PFLEPTKVESIVKNFASKQEPL LSL+SIGSLP+DNNILFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESIVKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
        FQSQLCEAMRKEGIE GEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT+EA
Subjt:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA

XP_022993671.1 uncharacterized protein LOC111489594 [Cucurbita maxima]4.6e-9497.27Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESIVKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PFLEPTKVESIVKNFASKQEPL LSLSSIGSLPSDNN+LFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESIVKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
        FQSQLCEAMRKEGIEIGEEYR GSWIPHCAVAQEVP+ARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
Subjt:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA

XP_038890563.1 uncharacterized protein LOC120080080 [Benincasa hispida]7.1e-9598.36Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESIVKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESIVKNFASKQEPL LSLSSIGSLPSD+NILFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESIVKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
        FQSQLC+AMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
Subjt:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA

TrEMBL top hitse value%identityAlignment
A0A0A0KVB2 Uncharacterized protein1.1e-96100Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESIVKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESIVKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESIVKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
        FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
Subjt:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA

A0A1S3C834 uncharacterized protein LOC1034980551.1e-96100Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESIVKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESIVKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESIVKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
        FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
Subjt:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA

A0A5A7T7Y4 RNA ligase/cyclic nucleotide phosphodiesterase1.1e-96100Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESIVKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESIVKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESIVKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
        FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
Subjt:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA

A0A6J1FNR7 uncharacterized protein LOC1114455665.0e-9496.72Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESIVKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PFLEPTKVESIVKNFASKQEPL LSLSSIGSLPSDNN+LFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESIVKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
        FQSQLCEAMRKEGIEIGEEYR GSWIPHC+VAQEVP+ARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
Subjt:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA

A0A6J1JWZ6 uncharacterized protein LOC1114895942.2e-9497.27Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESIVKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PFLEPTKVESIVKNFASKQEPL LSLSSIGSLPSDNN+LFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESIVKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
        FQSQLCEAMRKEGIEIGEEYR GSWIPHCAVAQEVP+ARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
Subjt:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G28140.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein3.4e-7171.2Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS-TPFLEPTKVESIVKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLL
        MSQG+AIELYFDPALENQVLKAWNV ARRQIST LI  ESRPHITLFS T  ++ TK+E I+K+F+SKQEP++LS SSIGS  SD+N LFL P PS+SL+
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS-TPFLEPTKVESIVKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLL

Query:  QFQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
        Q Q QLCE ++KEG EIGEEYR+ SW+P C+VA +VPK+R++E F VLRDLKL V GYA+DIGLVEFSPVRE+FSF LGN +E+
Subjt:  QFQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA

AT3G28140.2 RNA ligase/cyclic nucleotide phosphodiesterase family protein2.2e-5467.32Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS-TPFLEPTKVESIVKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLL
        MSQG+AIELYFDPALENQVLKAWNV ARRQIST LI  ESRPHITLFS T  ++ TK+E I+K+F+SKQEP++LS SSIGS  SD+N LFL P PS+SL+
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS-TPFLEPTKVESIVKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLL

Query:  QFQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKL
        Q Q QLCE ++KEG EIGEEYR+ SW+P C+VA +VPK+R++E F V     L
Subjt:  QFQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKL

AT5G40190.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein2.7e-7671.58Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESIVKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQ
        MS+G+AIELYFDPALENQVLKAWNV ARRQIST+LI  ESRPHITLFST F + T++ES++KNF SKQEP+++S S+IGS  SDNN+LFL P PS+SLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESIVKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA
         Q+QLC+ ++KE ++IGEEYR+ SW+P C VA +VPK+RMAEAF VLRDLKLPV+GY ++IGLVEFSPVRE+FSF LGNT+E+
Subjt:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACAAGGGTTTGCGATCGAGCTTTATTTCGATCCAGCACTTGAAAATCAAGTTCTCAAGGCTTGGAATGTACTAGCTCGCCGTCAAATTAGTACCCAGCTCATCGA
AATTGAGTCACGTCCTCACATTACCCTTTTCTCTACCCCGTTTCTCGAACCCACAAAAGTTGAATCGATCGTTAAAAATTTCGCTTCTAAACAGGAACCTTTGGCTTTGT
CTTTATCGTCAATTGGTAGCCTTCCCAGCGACAACAACATTCTCTTTCTCGGTCCAGCGCCTTCGATTTCACTTCTTCAATTTCAGTCCCAATTGTGTGAAGCAATGAGG
AAAGAAGGAATTGAAATTGGTGAGGAATATCGCCTTGGTTCGTGGATTCCCCATTGCGCTGTTGCTCAGGAGGTGCCTAAGGCTCGAATGGCTGAGGCATTTTGTGTTCT
AAGGGATTTGAAGCTACCAGTTTCCGGGTATGCAATTGATATTGGGTTGGTGGAATTTTCCCCTGTTCGGGAGCTCTTCTCTTTTGTTCTTGGTAACACTGTCGAAGCTT
GA
mRNA sequenceShow/hide mRNA sequence
CTAGTTGTTAGCAGTATTAAGATATAGTAAAGCGTTGAGTAAATGTTGGTAAAGCATAATTCAAAATTTGGTGTACCAAAGGAATTTGGAGTTCAACGCTGGTTGGCTCG
GTGGTTTAAGCGGGCCGGCCGATGCCCCCTTCTCTCTCTCTCTCTCCCGTTGTCTTCCTCGTTTCGATCCACTCCGAAACACACCCAATCTGGTTCGGCTCTTACCAAGT
GGCTTTGCAGTTCCAACTCTCTCGTATAGCCTTTCCTTTCATCCCTCTCTTTCCCACTTTTAACTTCACTTCACCGCTTTAGGTCTCTATTCTTCCATTTCTTAATCACC
CCATCTTCTTAAAACTCTCCACTTTCTTCAAATTTCTGTTTTTTGTTTCTCTTTTACCTCTTTCTCGCATCATCTGGGTCCTTTGGATTTCTTCTGGGTATTATTGTTTT
CTTCTGTTTTCTTCTGTTTTCTTTGTCTTCTATTTCTAGGGTTTTGAATTTCCCCTTTCGTACACCTCTGATCTTCTCTTGTAATTGGAAATTTTGGTTTCTGGGTTTTG
TTTGTTTCTCTAATTTACTTTCAGGATTTTGAGTTCTAAGGCGATGTCACAAGGGTTTGCGATCGAGCTTTATTTCGATCCAGCACTTGAAAATCAAGTTCTCAAGGCTT
GGAATGTACTAGCTCGCCGTCAAATTAGTACCCAGCTCATCGAAATTGAGTCACGTCCTCACATTACCCTTTTCTCTACCCCGTTTCTCGAACCCACAAAAGTTGAATCG
ATCGTTAAAAATTTCGCTTCTAAACAGGAACCTTTGGCTTTGTCTTTATCGTCAATTGGTAGCCTTCCCAGCGACAACAACATTCTCTTTCTCGGTCCAGCGCCTTCGAT
TTCACTTCTTCAATTTCAGTCCCAATTGTGTGAAGCAATGAGGAAAGAAGGAATTGAAATTGGTGAGGAATATCGCCTTGGTTCGTGGATTCCCCATTGCGCTGTTGCTC
AGGAGGTGCCTAAGGCTCGAATGGCTGAGGCATTTTGTGTTCTAAGGGATTTGAAGCTACCAGTTTCCGGGTATGCAATTGATATTGGGTTGGTGGAATTTTCCCCTGTT
CGGGAGCTCTTCTCTTTTGTTCTTGGTAACACTGTCGAAGCTTGAAGCTTTGACGCCATTGTTGTGCTTTAATCTCATAGTTCTTCTCTATGAACTTGTATAACCTTCAA
TTTATTGTAGCTGTTTTAGAGGTCCTATTTAGACGCTAGAGCATTACAAATAAGGATACATTTTGTATTTTGTGTTATGAATTTGATATTTTCTATATTGTCTTCATATT
ACATTTGAATCTTACGTGCTAGTGCATTTAATAAACACAGTTGATTTGATTATTAGTGAGTGAGTGAAGAGGAAAAACCTTATAGGTTCATTCACTTGCTAAGGCTCTGA
ACTTGTTGGGTTCTTTGAGATGATTCCTGTATTCACAATTCATACTGTAGATTGTAACCTTTCATTGGATTCTGTTGAAATTGATGTTAAAGGCTTAGGCCTTTCAATTA
TAATTGCTCTTGGATAAACACTTTTACTTGCAAGTTGCTGTATCATGAACCTTTTTATGGGTTGAGTTGTAAACTGATAAGCA
Protein sequenceShow/hide protein sequence
MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESIVKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQFQSQLCEAMR
KEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA