CuGenDBv2

Gene ID	CSPI05G28330
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Uma2 family endonuclease
Genome location	Chr5:26793803..26794345
RNA-Seq Expression	CSPI05G28330
Synteny	CSPI05G28330
Gene Ontology terms	GO:0005634 - nucleus (cellular component) GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAF5298878.1 hypothetical protein FQR65_LT09529 [Abscondita terminalis]

2.5e-07

56.86

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Query:  QARARDRARYRAKDRARHRARDRARDRARYRARYRAKYRARHRARYRARDQASVKDRARDRASVKDRVRASAKDRVRDHAKDRAKAKDRVRANAKDRASL
        +ARAR RAR RA+ RAR RAR RAR RAR RAR RA+ RAR RAR RAR +A  + RAR RA  + R RA A+ R R  A+ RA+A+ R RA A+ RA  
Subjt:  QARARDRARYRAKDRARHRARDRARDRARYRARYRAKYRARHRARYRARDQASVKDRARDRASVKDRVRASAKDRVRDHAKDRAKAKDRVRANAKDRASL

Query:  VV
        +V
Subjt:  VV

KAF5304192.1 hypothetical protein FQR65_LT18893 [Abscondita terminalis]

3.2e-07

53.1

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Query:  QARARDRARYRAKDRARHRARDRARDRARYRARYRAKYRARHRARYRARDQASVKDRARDRASVKDRVRASAKDRVRDHAKDRAKAKDRVRANAKDRASL
        +ARAR RAR RA+ RAR RAR RAR RAR RAR RA+ RAR RAR RAR +A  + RAR RA  + R RA A+ R R  A+ RA+A+ R RA A+ RA +
Subjt:  QARARDRARYRAKDRARHRARDRARDRARYRARYRAKYRARHRARYRARDQASVKDRARDRASVKDRVRASAKDRVRDHAKDRAKAKDRVRANAKDRASL

Query:  VVVGEEMSGLRNK
               S  R K
Subjt:  VVVGEEMSGLRNK

WP_077726905.1 hypothetical protein [Clostridioides difficile]

5.5e-07

58.16

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Query:  QARARDRARYRAKDRARHRARDRARDRARYRARYRAKYRARHRARYRARDQASVKDRARDRASVKDRVRASAKDRVRDHAKDRAKAKDRVRANAKDRA
        +ARAR RAR RA+ RAR RAR RAR RAR RAR RA+ RAR RAR RAR +A  + RAR RA  + R RA A+ R R  A+ RA+A+ R RA A+ RA
Subjt:  QARARDRARYRAKDRARHRARDRARDRARYRARYRAKYRARHRARYRARDQASVKDRARDRASVKDRVRASAKDRVRDHAKDRAKAKDRVRANAKDRA

WP_193366551.1 hypothetical protein, partial [Inquilinus limosus]

7.2e-07

58.16

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Query:  QARARDRARYRAKDRARHRARDRARDRARYRARYRAKYRARHRARYRARDQASVKDRARDRASVKDRVRASAKDRVRDHAKDRAKAKDRVRANAKDRA
        +ARAR RAR RA+ RAR RAR RAR RAR RAR RA+ RAR RAR RAR +A  + RAR RA  + R RA A+ R R  A+ RA+A+ R RA A+ RA
Subjt:  QARARDRARYRAKDRARHRARDRARDRARYRARYRAKYRARHRARYRARDQASVKDRARDRASVKDRVRASAKDRVRDHAKDRAKAKDRVRANAKDRA

WP_197088874.1 hypothetical protein, partial [Cellulosimicrobium funkei]

7.2e-07

58.16

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Query:  QARARDRARYRAKDRARHRARDRARDRARYRARYRAKYRARHRARYRARDQASVKDRARDRASVKDRVRASAKDRVRDHAKDRAKAKDRVRANAKDRA
        +ARAR RAR RA+ RAR RAR RAR RAR RAR RA+ RAR RAR RAR +A  + RAR RA  + R RA A+ R R  A+ RA+A+ R RA A+ RA
Subjt:  QARARDRARYRAKDRARHRARDRARDRARYRARYRAKYRARHRARYRARDQASVKDRARDRASVKDRVRASAKDRVRDHAKDRAKAKDRVRANAKDRA

TrEMBL top hits

e value

%identity

Alignment

A0A0H2KXS0 Uncharacterized protein (Fragment)

3.5e-07

58.16

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Query:  QARARDRARYRAKDRARHRARDRARDRARYRARYRAKYRARHRARYRARDQASVKDRARDRASVKDRVRASAKDRVRDHAKDRAKAKDRVRANAKDRA
        +ARAR RAR RA+ RAR RAR RAR RAR RAR RA+ RAR RAR RAR +A  + RAR RA  + R RA A+ R R  A+ RA+A+ R RA A+ RA
Subjt:  QARARDRARYRAKDRARHRARDRARDRARYRARYRAKYRARHRARYRARDQASVKDRARDRASVKDRVRASAKDRVRDHAKDRAKAKDRVRANAKDRA

A0A6I5BIA1 Uma2 family endonuclease (Fragment)

3.5e-07

58.16

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Query:  QARARDRARYRAKDRARHRARDRARDRARYRARYRAKYRARHRARYRARDQASVKDRARDRASVKDRVRASAKDRVRDHAKDRAKAKDRVRANAKDRA
        +ARAR RAR RA+ RAR RAR RAR RAR RAR RA+ RAR RAR RAR +A  + RAR RA  + R RA A+ R R  A+ RA+A+ R RA A+ RA
Subjt:  QARARDRARYRAKDRARHRARDRARDRARYRARYRAKYRARHRARYRARDQASVKDRARDRASVKDRVRASAKDRVRDHAKDRAKAKDRVRANAKDRA

A0A7J7AZ79 Uncharacterized protein

1.2e-07

56.86

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Query:  QARARDRARYRAKDRARHRARDRARDRARYRARYRAKYRARHRARYRARDQASVKDRARDRASVKDRVRASAKDRVRDHAKDRAKAKDRVRANAKDRASL
        +ARAR RAR RA+ RAR RAR RAR RAR RAR RA+ RAR RAR RAR +A  + RAR RA  + R RA A+ R R  A+ RA+A+ R RA A+ RA  
Subjt:  QARARDRARYRAKDRARHRARDRARDRARYRARYRAKYRARHRARYRARDQASVKDRARDRASVKDRVRASAKDRVRDHAKDRAKAKDRVRANAKDRASL

Query:  VV
        +V
Subjt:  VV

A0A7J7BFK1 Uncharacterized protein

1.6e-07

53.1

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Query:  QARARDRARYRAKDRARHRARDRARDRARYRARYRAKYRARHRARYRARDQASVKDRARDRASVKDRVRASAKDRVRDHAKDRAKAKDRVRANAKDRASL
        +ARAR RAR RA+ RAR RAR RAR RAR RAR RA+ RAR RAR RAR +A  + RAR RA  + R RA A+ R R  A+ RA+A+ R RA A+ RA +
Subjt:  QARARDRARYRAKDRARHRARDRARDRARYRARYRAKYRARHRARYRARDQASVKDRARDRASVKDRVRASAKDRVRDHAKDRAKAKDRVRANAKDRASL

Query:  VVVGEEMSGLRNK
               S  R K
Subjt:  VVVGEEMSGLRNK

A0A803JQT9 Uncharacterized protein

1.0e-11

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Query:  RARDRARYRAKDRARHRARDRARDRARYRARYRAKYRARHRARYRARDQASVKDRARDRASVKDRVRASAKD----RVRDHAKDRAKAKDRVRANAKDRA
        RARDRAR RA+DRAR R R R RDRAR RAR R + RAR RAR RARD+A  +DRARDR   +DR R  A+D    R RD A+ RA+A+DR RA A+DRA
Subjt:  RARDRARYRAKDRARHRARDRARDRARYRARYRAKYRARHRARYRARDQASVKDRARDRASVKDRVRASAKD----RVRDHAKDRAKAKDRVRANAKDRA

SwissProt top hits

e value

%identity

Alignment

Q5RKG3 Testis-specific H1 histone

1.2e-04

46.36

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Query:  LHQARARDRARYRAKDRARHRARDRARDRARYRARYRAKYRARHRARYRARDQA------SVKDRARD--RASVKDRVRASAKDRVRDHAKD--RAKAKD
        L ++  R RA  RA  RAR RAR RAR RAR RAR RA  RAR  AR  AR  A      SV+  AR   R+S++ R R+ A+ R R  AKD  R+KA++
Subjt:  LHQARARDRARYRAKDRARHRARDRARDRARYRARYRAKYRARHRARYRARDQA------SVKDRARD--RASVKDRVRASAKDRVRDHAKD--RAKAKD

Query:  RVRANAKDRA
        + R  A+++A
Subjt:  RVRANAKDRA

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCACCGGACTGCTGCAGTAGCTGCCACTCAGGGACCTGCTGTAGTGGCGGCGGCAGCGACATCCCTCCTTATGGGTGTGTGGACAATCCACCTAGGTGTAGTTCTAGC
TCAATTTGCCATCCCTCTCCTTCATCAGGCCCGTGCCAGGGACCGTGCCAGGTACCGTGCCAAGGACCGTGCCAGGCACCGTGCCAGGGACCGTGCCAGGGACCGTGCCA
GGTACCGTGCCAGGTACCGTGCCAAGTACCGTGCCAGGCACCGTGCCAGGTACCGTGCCAGGGACCAAGCCAGTGTCAAGGATCGTGCCAGGGACCGAGCCAGTGTCAAG
GATCGTGTCAGGGCCAGTGCCAAGGATCGTGTCAGGGATCATGCCAAGGATCGTGCCAAGGCCAAGGATCGTGTCAGGGCCAATGCCAAGGATCGTGCCAGTCTTGTGGT
TGTGGGAGAGGAAATGTCCGGGTTGAGGAACAAGATGAATCAAACTTTAATCAACCTACAAGTGAATCAATTTCCCCAAAGAATGATGGAAATTAGGACATGA

mRNA sequence

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Protein sequence

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MHRTAAVAATQGPAVVAAAATSLLMGVWTIHLGVVLAQFAIPLLHQARARDRARYRAKDRARHRARDRARDRARYRARYRAKYRARHRARYRARDQASVKDRARDRASVK
DRVRASAKDRVRDHAKDRAKAKDRVRANAKDRASLVVVGEEMSGLRNKMNQTLINLQVNQFPQRMMEIRT

CSPI05G28330 (gene) of Cucumber (PI 183967) v1 genome