; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI05G28840 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G28840
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTranscription factor protein
Genome locationChr5:27216986..27218356
RNA-Seq ExpressionCSPI05G28840
SyntenyCSPI05G28840
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004151201.2 transcription factor PRE6 [Cucumis sativus]5.2e-38100Show/hide
Query:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
        MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ

XP_022134204.1 transcription factor PRE6 [Momordica charantia]8.4e-3695.6Show/hide
Query:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
        MSSRRSRQS  SRISDDQIIELVSKLRQLVPEIRHRR DKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTID+DSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ

XP_022939473.1 transcription factor PRE6-like [Cucurbita moschata]2.4e-3593.41Show/hide
Query:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
        MS+RRSR S ASRISDDQII+L+SKLRQLVPEIRHRRPDKVSASKVL ETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ

XP_022993701.1 transcription factor PRE6-like [Cucurbita maxima]4.1e-3593.41Show/hide
Query:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
        MS+RRSR S  SRISDDQIIEL+SKLRQLVPEIRHRRPDKVSASKVL ETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ

XP_038890645.1 LOW QUALITY PROTEIN: transcription factor PRE6 [Benincasa hispida]2.6e-3797.8Show/hide
Query:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
        MSSRRSRQSSASRI+DDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTID+DSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ

TrEMBL top hitse value%identityAlignment
A0A0A0KXB9 Transcription regulator2.5e-38100Show/hide
Query:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
        MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ

A0A1S3CB29 transcription factor PRE62.5e-38100Show/hide
Query:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
        MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ

A0A5A7T970 Transcription factor PRE62.5e-38100Show/hide
Query:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
        MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ

A0A6J1BY51 transcription factor PRE64.0e-3695.6Show/hide
Query:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
        MSSRRSRQS  SRISDDQIIELVSKLRQLVPEIRHRR DKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTID+DSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ

A0A6J1FLR3 transcription factor PRE6-like1.2e-3593.41Show/hide
Query:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
        MS+RRSR S ASRISDDQII+L+SKLRQLVPEIRHRRPDKVSASKVL ETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ

SwissProt top hitse value%identityAlignment
B8APB5 Transcription factor ILI63.1e-2569.57Show/hide
Query:  MSSR--RSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIM
        MSSR  RSRQS +SRI+D+QI +LVSKL+ L+PE R R  D+V +S+VLQETCNYIR+LH+EVDDLSERLS+LL+T D  SA+AAIIRSL+M
Subjt:  MSSR--RSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIM

Q8GW32 Transcription factor PRE61.2e-2977.17Show/hide
Query:  MSSR---RSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLI
        MSSR   RSRQS +SRISDDQI +LVSKL+ L+PE+R RR DKVSASKVLQETCNYIRNLHREVDDLS+RLS+LL++ D +SAEAAIIRSL+
Subjt:  MSSR---RSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLI

Q9FLE9 Transcription factor PRE13.9e-2876.09Show/hide
Query:  MSSRRSRQ-SSASRISDDQIIELVSKLRQLVPEI-RHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIM
        MS+RRSRQ SSA RISD+Q+I+LVSKLRQ++PEI + RR DK SASKVLQETCNYIRNL+REVD+LSERLSQLL ++D DS EAA+IRSL+M
Subjt:  MSSRRSRQ-SSASRISDDQIIELVSKLRQLVPEI-RHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIM

Q9LJX1 Transcription factor PRE57.9e-2977.17Show/hide
Query:  MSSRRSRQ-SSASRISDDQIIELVSKLRQLVPEI-RHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIM
        MS+RRSRQ S+ASRISDDQ+I+LVSKLRQ +PEI   RR DKVSASKVLQETCNYIR LHREVD+LS+RLSQLL ++D DS EAA+IRSL+M
Subjt:  MSSRRSRQ-SSASRISDDQIIELVSKLRQLVPEI-RHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIM

Q9LXG5 Transcription factor PRE21.1e-2573.33Show/hide
Query:  SSRRSRQ-SSASRISDDQIIELVSKLRQLVPEIR-HRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLI
        SSRRSRQ SS+SRISDDQI +L+SKLRQ +PEIR +RR + VSASKVLQETCNYIRNL++E DDLS+RL+QLL +ID +S +AA+IRSLI
Subjt:  SSRRSRQ-SSASRISDDQIIELVSKLRQLVPEIR-HRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLI

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein8.6e-3177.17Show/hide
Query:  MSSR---RSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLI
        MSSR   RSRQS +SRISDDQI +LVSKL+ L+PE+R RR DKVSASKVLQETCNYIRNLHREVDDLS+RLS+LL++ D +SAEAAIIRSL+
Subjt:  MSSR---RSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLI

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 17.1e-2567.37Show/hide
Query:  MSSRRSR---QSSASRISDDQIIELVSKLRQLVPEIR-HRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ
        MS RRSR    S  SRIS+DQI +L+ KL+QL+PE+R  RR DKVSA++VLQ+TCNYIRNLHREVDDLSERLS+LL+  +SD+A+AA+IRSL+ Q
Subjt:  MSSRRSR---QSSASRISDDQIIELVSKLRQLVPEIR-HRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein5.6e-3077.17Show/hide
Query:  MSSRRSRQ-SSASRISDDQIIELVSKLRQLVPEI-RHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIM
        MS+RRSRQ S+ASRISDDQ+I+LVSKLRQ +PEI   RR DKVSASKVLQETCNYIR LHREVD+LS+RLSQLL ++D DS EAA+IRSL+M
Subjt:  MSSRRSRQ-SSASRISDDQIIELVSKLRQLVPEI-RHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIM

AT5G15160.1 BANQUO 27.6e-2773.33Show/hide
Query:  SSRRSRQ-SSASRISDDQIIELVSKLRQLVPEIR-HRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLI
        SSRRSRQ SS+SRISDDQI +L+SKLRQ +PEIR +RR + VSASKVLQETCNYIRNL++E DDLS+RL+QLL +ID +S +AA+IRSLI
Subjt:  SSRRSRQ-SSASRISDDQIIELVSKLRQLVPEIR-HRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLI

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein2.8e-2976.09Show/hide
Query:  MSSRRSRQ-SSASRISDDQIIELVSKLRQLVPEI-RHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIM
        MS+RRSRQ SSA RISD+Q+I+LVSKLRQ++PEI + RR DK SASKVLQETCNYIRNL+REVD+LSERLSQLL ++D DS EAA+IRSL+M
Subjt:  MSSRRSRQ-SSASRISDDQIIELVSKLRQLVPEI-RHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTAGCAGAAGATCAAGGCAGTCAAGTGCTTCTAGAATCAGTGACGACCAAATCATTGAACTCGTTTCCAAGCTTCGCCAACTCGTCCCCGAGATTCGCCATCGCCG
CCCCGACAAGGTATCAGCTTCAAAAGTCCTTCAAGAGACTTGCAATTACATTAGAAATTTGCATAGGGAAGTTGATGACTTAAGTGAAAGACTCTCTCAACTTCTATCAA
CTATAGATTCTGATAGTGCAGAGGCAGCCATAATTAGGAGCTTAATTATGCAATAG
mRNA sequenceShow/hide mRNA sequence
GAAAAGAAAAAAAAACCAACCCAACTCCCCCACTCCTTTCTCTAAATCAATTGTCTTCTTCACATCCAACATCTCCCATCTCTCTCTCTCTCTCTCCTAAGTTTATTTTT
TCCTCTGTGGTCCTTCCCTCTTTATAACTCTCTTATCACTTCCCCCCCTTCTTCCTTCCTTCAAACCTTCCTCTCTTCTTCTTCTTCTTCTTCTTTCTCCACTTTCCATA
ACCACTTTCCCTCTCTTCATCCCTTTCTTTCCAAAACAATAACTTAATTCAACATCAATTTTACAACATGTCTAGCAGAAGATCAAGGCAGTCAAGTGCTTCTAGAATCA
GTGACGACCAAATCATTGAACTCGTTTCCAAGCTTCGCCAACTCGTCCCCGAGATTCGCCATCGCCGCCCCGACAAGGTATCAGCTTCAAAAGTCCTTCAAGAGACTTGC
AATTACATTAGAAATTTGCATAGGGAAGTTGATGACTTAAGTGAAAGACTCTCTCAACTTCTATCAACTATAGATTCTGATAGTGCAGAGGCAGCCATAATTAGGAGCTT
AATTATGCAATAGGATCAAGAACAAGAACAAGAGCGACAAAGCTATTGGGTTTGGTAATCATATATATATATATAT
Protein sequenceShow/hide protein sequence
MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ