; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI05G29320 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G29320
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description40S ribosomal protein S19
Genome locationChr5:27596045..27597974
RNA-Seq ExpressionCSPI05G29320
SyntenyCSPI05G29320
Gene Ontology termsGO:0000028 - ribosomal small subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001266 - Ribosomal protein S19e
IPR018277 - Ribosomal protein S19e, conserved site
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593129.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]1.9e-7497.9Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWYY+RAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

XP_004141465.1 40S ribosomal protein S19-3 [Cucumis sativus]9.9e-76100Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

XP_022923365.1 40S ribosomal protein S19-3-like [Cucurbita moschata]8.4e-7598.6Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWYY+RAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

XP_022938991.1 40S ribosomal protein S19-3 [Cucurbita moschata]1.9e-7497.9Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWYY+RAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGR+ITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

XP_022954406.1 40S ribosomal protein S19-3-like [Cucurbita moschata]1.9e-7497.9Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWYY+RAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

TrEMBL top hitse value%identityAlignment
A0A0A0KSI3 Uncharacterized protein4.8e-76100Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

A0A1S3CB93 40S ribosomal protein S19-34.8e-76100Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

A0A5A7T7J1 40S ribosomal protein S19-3-like4.8e-76100Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

A0A6J1EBL3 40S ribosomal protein S19-3-like4.1e-7598.6Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWYY+RAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

A0A6J1JTL0 40S ribosomal protein S19-3-like4.1e-7598.6Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWYY+RAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

SwissProt top hitse value%identityAlignment
P40978 40S ribosomal protein S191.0e-6280Show/hide
Query:  ATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIA
        +TA+TVKDV+PHEFVKAY+AHLKRSGK+ELP W DIVKTARFKEL PYD DWYY RAAS+ARKIYLR G+GVG F++IYGG +RNGSRPPHFC+SSGAI+
Subjt:  ATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIA

Query:  RHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVV
        R+ILQQLQ+M I+DVDPKGGR ITS GRRDLDQVAGR+ V
Subjt:  RHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVV

Q94613 40S ribosomal protein S199.4e-4556.72Show/hide
Query:  TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHIL
        +VKDVS HEF +A+AA LK+SGK+++P WTD VKT  FKEL+PY+ DWY++RAAS+ R +Y+R   G+G+F++IYGG +R G+ P HFC+++G+I+R +L
Subjt:  TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHIL

Query:  QQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRI
        Q L+ + IV+ DP GGRR+TS GRRDLD++A +I
Subjt:  QQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRI

Q9FNP8 40S ribosomal protein S19-31.6e-6885.92Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT KTVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYD DWYY+RAASMARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA
        ARHILQQLQ MNIVD+D KGGR+ITSSG+RDLDQVAGRI  A
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA

Q9LF30 40S ribosomal protein S19-28.7e-6786.33Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYD DWYY+RAASMARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG I
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRI
        ARHILQQL+ M+IV++D KGGRRITSSG+RDLDQVAGRI
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRI

Q9SGA6 40S ribosomal protein S19-12.1e-6884.62Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYD DWYY+RAASMARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG I
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQL+ MNIV++D KGGRRITSSG+RDLDQVAGRI V P
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

Arabidopsis top hitse value%identityAlignment
AT3G02080.1 Ribosomal protein S19e family protein1.5e-6984.62Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYD DWYY+RAASMARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG I
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQL+ MNIV++D KGGRRITSSG+RDLDQVAGRI V P
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

AT5G15520.1 Ribosomal protein S19e family protein6.2e-6886.33Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYD DWYY+RAASMARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG I
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRI
        ARHILQQL+ M+IV++D KGGRRITSSG+RDLDQVAGRI
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRI

AT5G61170.1 Ribosomal protein S19e family protein1.1e-6985.92Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT KTVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYD DWYY+RAASMARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA
        ARHILQQLQ MNIVD+D KGGR+ITSSG+RDLDQVAGRI  A
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGGCGAAGACTGTGAAAGACGTTTCTCCTCACGAATTTGTGAAGGCCTACGCCGCCCATCTCAAAAGATCCGGAAAGGTTGAACTACCTCCCTGGACTGATAT
AGTTAAAACTGCAAGATTCAAGGAATTAGCACCTTATGATGCTGATTGGTATTATCTGAGAGCTGCGAGCATGGCTAGGAAAATATACTTGAGGGGTGGACTTGGTGTGG
GGGCTTTTAAGCGGATTTATGGTGGAAGCAAGAGGAATGGGAGTCGCCCTCCACATTTCTGTGAAAGCAGTGGTGCTATCGCTCGCCATATTTTACAACAGTTGCAGGAA
ATGAACATTGTTGATGTTGATCCTAAGGGTGGTAGGAGAATCACTTCGAGCGGTCGACGGGATCTTGACCAAGTTGCCGGTCGGATCGTTGTTGCTCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATTGAAGTTTTTTCTCTTAAAATAAAAGCAGAAATCCAAAAATGTAACAAAGGCCCAATGAACTAATATAAAACGAGAGTAACCCTAGTCCAGGGTTACTCTTTCTCTCT
ATCATCTCCGCTTGCTCAACAATGGCGACGGCGAAGACTGTGAAAGACGTTTCTCCTCACGAATTTGTGAAGGCCTACGCCGCCCATCTCAAAAGATCCGGAAAGGTTGA
ACTACCTCCCTGGACTGATATAGTTAAAACTGCAAGATTCAAGGAATTAGCACCTTATGATGCTGATTGGTATTATCTGAGAGCTGCGAGCATGGCTAGGAAAATATACT
TGAGGGGTGGACTTGGTGTGGGGGCTTTTAAGCGGATTTATGGTGGAAGCAAGAGGAATGGGAGTCGCCCTCCACATTTCTGTGAAAGCAGTGGTGCTATCGCTCGCCAT
ATTTTACAACAGTTGCAGGAAATGAACATTGTTGATGTTGATCCTAAGGGTGGTAGGAGAATCACTTCGAGCGGTCGACGGGATCTTGACCAAGTTGCCGGTCGGATCGT
TGTTGCTCCTTGATTGATGAAGAGAGATTTGTGTGTTTGTTGATGAGATACCACCGTGAAAATTTTGGATATGAATGAAGATAAGCTTACTCTCATGTTTTCATGGGTTT
TGGATAGTTTAAAAGTTCAATTTCATTTCCTTAGTCAATTATTTATGAGTTCTTAGGATGAAATATGTTTTTTTTCTTCAATGCTATCAGCAGTGGCGTGGTTGATGCTT
AGAAACGGACCTTTTGTAGTAATTTTTTGACATATCATATCAATTATCAATAGAGTTTGCTGTTTGCTGCC
Protein sequenceShow/hide protein sequence
MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQE
MNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP