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CSPI05G29960 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G29960
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionF-box protein
Genome locationChr5:28018765..28019539
RNA-Seq ExpressionCSPI05G29960
SyntenyCSPI05G29960
Gene Ontology termsNA
InterPro domainsIPR017451 - F-box associated interaction domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039382.1 F-box protein [Cucumis melo var. makuwa]3.6e-7880.43Show/hide
Query:  MDIFTFDNGHKQWRHFKRLPFVVIHHGQYLNGIIYWIGKKLEKEGEVVIYALHVDTEQMECIATLKIGAFLKNGSIKIYEDRVYAVINLLDKRVSPPCYK
        M+IFTFDNG+KQWRHF+RLPFVV HHGQYLNG+IYWIGKKLEKEGE VIYAL VDTEQMECIATL+IG FLKNGSIKI+E+RVYA+I+L+DKRVSP  YK
Subjt:  MDIFTFDNGHKQWRHFKRLPFVVIHHGQYLNGIIYWIGKKLEKEGEVVIYALHVDTEQMECIATLKIGAFLKNGSIKIYEDRVYAVINLLDKRVSPPCYK

Query:  IELWRMQKKDSWIKEFSADEEFFGFVEVFEDGELLFAIKDDLLRLDKSRKKIKIKTLNPSESTTKATGRYTIKSINFESLSTIL
        IELWRMQ KDSWIKEFS DEE FG + VFEDGELL AIKD++ RLDKSRKKIKIKTLN SES  K  G  TI SINFE LS IL
Subjt:  IELWRMQKKDSWIKEFSADEEFFGFVEVFEDGELLFAIKDDLLRLDKSRKKIKIKTLNPSESTTKATGRYTIKSINFESLSTIL

KAA0039383.1 F-box protein [Cucumis melo var. makuwa]2.5e-3983.87Show/hide
Query:  MDIFTFDNGHKQWRHFKRLPFVVIHHGQYLNGIIYWIGKKLEKEGEVVIYALHVDTEQMECIATLKIGAFLKNGSIKIYEDRVYAVINLLDKR
        M+IFTFDNGHKQWRHFKRLPF+V HHGQYLNG+IYWIGKKLEKEGEVVIYAL VDTEQMECIATL+IG FLKNG I+I E++VYA+I+L+DKR
Subjt:  MDIFTFDNGHKQWRHFKRLPFVVIHHGQYLNGIIYWIGKKLEKEGEVVIYALHVDTEQMECIATLKIGAFLKNGSIKIYEDRVYAVINLLDKR

TYK02998.1 F-box protein [Cucumis melo var. makuwa]5.8e-2035.9Show/hide
Query:  MDIFTFD-NGHKQWRHFKRLPFVVIHHGQYLNGIIYWIGKKLEKEGEVVIYALHVDTEQMECIATLKIGAF-LKNGSIKIYEDRVYAVINLLDKRVSPPC
        M I  FD +G  + +    LPF +  HG YLNG IYWIG++  K    VIYAL V+TE++E   TL +G     +G I+     +Y  + + +     P 
Subjt:  MDIFTFD-NGHKQWRHFKRLPFVVIHHGQYLNGIIYWIGKKLEKEGEVVIYALHVDTEQMECIATLKIGAF-LKNGSIKIYEDRVYAVINLLDKRVSPPC

Query:  YKIELWRMQKKDSWIKEFSA--------DEEFFGFVEVFEDGELLFAIKDDLLRLDKSRKKIKIKTLNPSESTTKATGRYT-IKSINFESLSTIL
        + +++WRMQ KDSWI+ F            E+F  V++FE G ++F +  DL  +D S KK+K+ T  P     K   R++ I ++NF SL  +L
Subjt:  YKIELWRMQKKDSWIKEFSA--------DEEFFGFVEVFEDGELLFAIKDDLLRLDKSRKKIKIKTLNPSESTTKATGRYT-IKSINFESLSTIL

XP_004141601.1 F-box protein At3g07870 [Cucumis sativus]1.6e-2542.08Show/hide
Query:  KQWRHFKRLPFVVIHHGQYLNGIIYWIGKKLEKEGEVVIYALHVDTEQMECIATLKIGA--FLKNGSIKIYEDRVYAVINLLDKRVSPPCYKIELWRMQK
        ++WRHFK  P     HG YLNG+IYW+GK  EK    VIYAL V+TEQME +A L++G   F  NG I      VYA + +    V P C KI++W MQ 
Subjt:  KQWRHFKRLPFVVIHHGQYLNGIIYWIGKKLEKEGEVVIYALHVDTEQMECIATLKIGA--FLKNGSIKIYEDRVYAVINLLDKRVSPPCYKIELWRMQK

Query:  KDSWIKEFSADEEF-------FGFVEVFEDGELLFAIKDDLLRLDKSRKKIKIKTLNPSESTTKATGRYTIKSINFESLSTIL
        K+ WI+EF   +E           V+V +DGE  F ++ ++L  DK+   IKI++L  S+  T+  G   I+S+NF S+  IL
Subjt:  KDSWIKEFSADEEF-------FGFVEVFEDGELLFAIKDDLLRLDKSRKKIKIKTLNPSESTTKATGRYTIKSINFESLSTIL

XP_008459707.1 PREDICTED: F-box protein At3g07870-like [Cucumis melo]5.2e-7779.35Show/hide
Query:  MDIFTFDNGHKQWRHFKRLPFVVIHHGQYLNGIIYWIGKKLEKEGEVVIYALHVDTEQMECIATLKIGAFLKNGSIKIYEDRVYAVINLLDKRVSPPCYK
        M+IFTFDNG+KQWRHF+RLPFVV HHGQYLNG+IYWIGKKLEKEGE VIYAL VDTEQMEC ATL+IG  LKNGSIKI+E+RVYA+I+L+DKRVSP  YK
Subjt:  MDIFTFDNGHKQWRHFKRLPFVVIHHGQYLNGIIYWIGKKLEKEGEVVIYALHVDTEQMECIATLKIGAFLKNGSIKIYEDRVYAVINLLDKRVSPPCYK

Query:  IELWRMQKKDSWIKEFSADEEFFGFVEVFEDGELLFAIKDDLLRLDKSRKKIKIKTLNPSESTTKATGRYTIKSINFESLSTIL
        IELWRMQKKDSWIKEFS DEE FG + VFEDGELL AIKD++ RLDKSRKKIKIKTLN SES  K  G  TI SINFE  S IL
Subjt:  IELWRMQKKDSWIKEFSADEEFFGFVEVFEDGELLFAIKDDLLRLDKSRKKIKIKTLNPSESTTKATGRYTIKSINFESLSTIL

TrEMBL top hitse value%identityAlignment
A0A0A0KUJ1 FBA_3 domain-containing protein7.7e-2642.08Show/hide
Query:  KQWRHFKRLPFVVIHHGQYLNGIIYWIGKKLEKEGEVVIYALHVDTEQMECIATLKIGA--FLKNGSIKIYEDRVYAVINLLDKRVSPPCYKIELWRMQK
        ++WRHFK  P     HG YLNG+IYW+GK  EK    VIYAL V+TEQME +A L++G   F  NG I      VYA + +    V P C KI++W MQ 
Subjt:  KQWRHFKRLPFVVIHHGQYLNGIIYWIGKKLEKEGEVVIYALHVDTEQMECIATLKIGA--FLKNGSIKIYEDRVYAVINLLDKRVSPPCYKIELWRMQK

Query:  KDSWIKEFSADEEF-------FGFVEVFEDGELLFAIKDDLLRLDKSRKKIKIKTLNPSESTTKATGRYTIKSINFESLSTIL
        K+ WI+EF   +E           V+V +DGE  F ++ ++L  DK+   IKI++L  S+  T+  G   I+S+NF S+  IL
Subjt:  KDSWIKEFSADEEF-------FGFVEVFEDGELLFAIKDDLLRLDKSRKKIKIKTLNPSESTTKATGRYTIKSINFESLSTIL

A0A1S3CB99 F-box protein At3g07870-like2.5e-7779.35Show/hide
Query:  MDIFTFDNGHKQWRHFKRLPFVVIHHGQYLNGIIYWIGKKLEKEGEVVIYALHVDTEQMECIATLKIGAFLKNGSIKIYEDRVYAVINLLDKRVSPPCYK
        M+IFTFDNG+KQWRHF+RLPFVV HHGQYLNG+IYWIGKKLEKEGE VIYAL VDTEQMEC ATL+IG  LKNGSIKI+E+RVYA+I+L+DKRVSP  YK
Subjt:  MDIFTFDNGHKQWRHFKRLPFVVIHHGQYLNGIIYWIGKKLEKEGEVVIYALHVDTEQMECIATLKIGAFLKNGSIKIYEDRVYAVINLLDKRVSPPCYK

Query:  IELWRMQKKDSWIKEFSADEEFFGFVEVFEDGELLFAIKDDLLRLDKSRKKIKIKTLNPSESTTKATGRYTIKSINFESLSTIL
        IELWRMQKKDSWIKEFS DEE FG + VFEDGELL AIKD++ RLDKSRKKIKIKTLN SES  K  G  TI SINFE  S IL
Subjt:  IELWRMQKKDSWIKEFSADEEFFGFVEVFEDGELLFAIKDDLLRLDKSRKKIKIKTLNPSESTTKATGRYTIKSINFESLSTIL

A0A5A7T7C6 F-box protein1.7e-7880.43Show/hide
Query:  MDIFTFDNGHKQWRHFKRLPFVVIHHGQYLNGIIYWIGKKLEKEGEVVIYALHVDTEQMECIATLKIGAFLKNGSIKIYEDRVYAVINLLDKRVSPPCYK
        M+IFTFDNG+KQWRHF+RLPFVV HHGQYLNG+IYWIGKKLEKEGE VIYAL VDTEQMECIATL+IG FLKNGSIKI+E+RVYA+I+L+DKRVSP  YK
Subjt:  MDIFTFDNGHKQWRHFKRLPFVVIHHGQYLNGIIYWIGKKLEKEGEVVIYALHVDTEQMECIATLKIGAFLKNGSIKIYEDRVYAVINLLDKRVSPPCYK

Query:  IELWRMQKKDSWIKEFSADEEFFGFVEVFEDGELLFAIKDDLLRLDKSRKKIKIKTLNPSESTTKATGRYTIKSINFESLSTIL
        IELWRMQ KDSWIKEFS DEE FG + VFEDGELL AIKD++ RLDKSRKKIKIKTLN SES  K  G  TI SINFE LS IL
Subjt:  IELWRMQKKDSWIKEFSADEEFFGFVEVFEDGELLFAIKDDLLRLDKSRKKIKIKTLNPSESTTKATGRYTIKSINFESLSTIL

A0A5A7T8U6 F-box protein1.2e-3983.87Show/hide
Query:  MDIFTFDNGHKQWRHFKRLPFVVIHHGQYLNGIIYWIGKKLEKEGEVVIYALHVDTEQMECIATLKIGAFLKNGSIKIYEDRVYAVINLLDKR
        M+IFTFDNGHKQWRHFKRLPF+V HHGQYLNG+IYWIGKKLEKEGEVVIYAL VDTEQMECIATL+IG FLKNG I+I E++VYA+I+L+DKR
Subjt:  MDIFTFDNGHKQWRHFKRLPFVVIHHGQYLNGIIYWIGKKLEKEGEVVIYALHVDTEQMECIATLKIGAFLKNGSIKIYEDRVYAVINLLDKR

A0A5D3BVH7 F-box protein2.8e-2035.9Show/hide
Query:  MDIFTFD-NGHKQWRHFKRLPFVVIHHGQYLNGIIYWIGKKLEKEGEVVIYALHVDTEQMECIATLKIGAF-LKNGSIKIYEDRVYAVINLLDKRVSPPC
        M I  FD +G  + +    LPF +  HG YLNG IYWIG++  K    VIYAL V+TE++E   TL +G     +G I+     +Y  + + +     P 
Subjt:  MDIFTFD-NGHKQWRHFKRLPFVVIHHGQYLNGIIYWIGKKLEKEGEVVIYALHVDTEQMECIATLKIGAF-LKNGSIKIYEDRVYAVINLLDKRVSPPC

Query:  YKIELWRMQKKDSWIKEFSA--------DEEFFGFVEVFEDGELLFAIKDDLLRLDKSRKKIKIKTLNPSESTTKATGRYT-IKSINFESLSTIL
        + +++WRMQ KDSWI+ F            E+F  V++FE G ++F +  DL  +D S KK+K+ T  P     K   R++ I ++NF SL  +L
Subjt:  YKIELWRMQKKDSWIKEFSA--------DEEFFGFVEVFEDGELLFAIKDDLLRLDKSRKKIKIKTLNPSESTTKATGRYT-IKSINFESLSTIL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATTTTTACCTTTGATAATGGCCATAAGCAATGGAGGCATTTTAAGCGTCTACCTTTTGTAGTCATCCATCATGGTCAGTACTTGAATGGAATCATCTACTGGAT
CGGAAAGAAATTAGAAAAAGAGGGGGAGGTTGTGATATATGCTCTCCATGTCGACACTGAACAGATGGAATGCATTGCAACCTTAAAAATTGGAGCTTTCTTGAAGAATG
GTTCCATTAAGATATACGAGGACAGGGTTTACGCAGTTATTAACTTGTTGGACAAACGAGTATCTCCACCATGTTATAAGATTGAATTGTGGAGGATGCAAAAGAAAGAT
TCATGGATTAAAGAATTTAGTGCTGATGAAGAATTTTTTGGCTTTGTTGAAGTTTTTGAAGATGGAGAGTTGTTGTTTGCGATCAAAGATGACTTACTTCGTTTGGATAA
GAGTAGAAAGAAGATCAAGATCAAAACATTGAATCCAAGTGAGAGTACAACTAAAGCTACAGGGCGTTATACTATAAAATCTATTAATTTCGAGTCTCTTTCAACCATTT
TGGTTTGA
mRNA sequenceShow/hide mRNA sequence
CCTGTAATGGTTTGTTGTATATCTGCAAGTTTATTTTTGACTCTCTATGTGAAGGCATATTAAATCCGATGACAAATGAATTTGTGGAAATTCCTCCACCCGATATAGAA
TTAGATGTTCACTGCGTTGGTTTTGGTTTCAGCCCTGAACAAAACAATACAAACTATTCAGAACTGAACCAGAAATCCTTCCCAATTGGAAAAAGTGCCATTACAGAATG
GATATTTTTACCTTTGATAATGGCCATAAGCAATGGAGGCATTTTAAGCGTCTACCTTTTGTAGTCATCCATCATGGTCAGTACTTGAATGGAATCATCTACTGGATCGG
AAAGAAATTAGAAAAAGAGGGGGAGGTTGTGATATATGCTCTCCATGTCGACACTGAACAGATGGAATGCATTGCAACCTTAAAAATTGGAGCTTTCTTGAAGAATGGTT
CCATTAAGATATACGAGGACAGGGTTTACGCAGTTATTAACTTGTTGGACAAACGAGTATCTCCACCATGTTATAAGATTGAATTGTGGAGGATGCAAAAGAAAGATTCA
TGGATTAAAGAATTTAGTGCTGATGAAGAATTTTTTGGCTTTGTTGAAGTTTTTGAAGATGGAGAGTTGTTGTTTGCGATCAAAGATGACTTACTTCGTTTGGATAAGAG
TAGAAAGAAGATCAAGATCAAAACATTGAATCCAAGTGAGAGTACAACTAAAGCTACAGGGCGTTATACTATAAAATCTATTAATTTCGAGTCTCTTTCAACCATTTTGG
TTTGA
Protein sequenceShow/hide protein sequence
MDIFTFDNGHKQWRHFKRLPFVVIHHGQYLNGIIYWIGKKLEKEGEVVIYALHVDTEQMECIATLKIGAFLKNGSIKIYEDRVYAVINLLDKRVSPPCYKIELWRMQKKD
SWIKEFSADEEFFGFVEVFEDGELLFAIKDDLLRLDKSRKKIKIKTLNPSESTTKATGRYTIKSINFESLSTILV