; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI05G30230 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G30230
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionkeratin, type II cytoskeletal 2 epidermal isoform X1
Genome locationChr5:28250310..28253498
RNA-Seq ExpressionCSPI05G30230
SyntenyCSPI05G30230
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004141514.1 glycine-rich cell wall structural protein 1 [Cucumis sativus]1.4e-74100Show/hide
Query:  MPRNMNGNRNQDGEDERGLLWNLPVLKSSRFGNLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNGNRNQDGEDERGLLWNLPVLKSSRFGNLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRNQDGEDERGLLWNLPVLKSSRFGNLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR
        GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR
Subjt:  GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR

XP_016902400.1 PREDICTED: glycine-rich cell wall structural protein 1 [Cucumis melo]3.5e-7397.92Show/hide
Query:  MPRNMNGNRNQDGEDERGLLWNLPVLKSSRFGNLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNGNRN+DGEDERGLLWNLPVLKSSRFGNLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRNQDGEDERGLLWNLPVLKSSRFGNLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR
        GDVLRG QSIFPHQDDIGALVDDLVLNTKRLIRATS+EIDKWKR
Subjt:  GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR

XP_022932819.1 keratin, type II cytoskeletal 2 epidermal isoform X1 [Cucurbita moschata]2.3e-6486.11Show/hide
Query:  MPRNMNGNRNQDGEDERGLLWNLPVLKSSRFGNLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNG+R++ GEDE G+LW LPVLKSSR G LGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYG GRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRNQDGEDERGLLWNLPVLKSSRFGNLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR
        GD+L GRQSIFPH+D+IGALVD+L LNTK+LIR T++EIDKWKR
Subjt:  GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR

XP_022974025.1 keratin, type II cytoskeletal 3 isoform X1 [Cucurbita maxima]6.7e-6485.42Show/hide
Query:  MPRNMNGNRNQDGEDERGLLWNLPVLKSSRFGNLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNG+R + GEDE G+LW LPVLKSSR G LGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYG GRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRNQDGEDERGLLWNLPVLKSSRFGNLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR
        GD+L GRQSIFPH+D+IGA+VD+L LNTK+LI+ T+KEIDKWKR
Subjt:  GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR

XP_038889093.1 ctenidin-1 isoform X1 [Benincasa hispida]9.3e-6690.28Show/hide
Query:  MPRNMNGNRNQDGEDERGLLWNLPVLKSSRFGNLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRN NGNR+Q GEDE GLLWNLPVLKSSRFG LGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRNQDGEDERGLLWNLPVLKSSRFGNLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR
        GD+L G QSIFP +DDI ALVD+LVLN+KRLIRATS+EIDKWKR
Subjt:  GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR

TrEMBL top hitse value%identityAlignment
A0A0A0KSM8 Uncharacterized protein7.0e-75100Show/hide
Query:  MPRNMNGNRNQDGEDERGLLWNLPVLKSSRFGNLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNGNRNQDGEDERGLLWNLPVLKSSRFGNLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRNQDGEDERGLLWNLPVLKSSRFGNLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR
        GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR
Subjt:  GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR

A0A1S4E347 glycine-rich cell wall structural protein 11.7e-7397.92Show/hide
Query:  MPRNMNGNRNQDGEDERGLLWNLPVLKSSRFGNLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNGNRN+DGEDERGLLWNLPVLKSSRFGNLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRNQDGEDERGLLWNLPVLKSSRFGNLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR
        GDVLRG QSIFPHQDDIGALVDDLVLNTKRLIRATS+EIDKWKR
Subjt:  GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR

A0A6J1EY31 keratin, type II cytoskeletal 2 epidermal isoform X11.1e-6486.11Show/hide
Query:  MPRNMNGNRNQDGEDERGLLWNLPVLKSSRFGNLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNG+R++ GEDE G+LW LPVLKSSR G LGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYG GRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRNQDGEDERGLLWNLPVLKSSRFGNLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR
        GD+L GRQSIFPH+D+IGALVD+L LNTK+LIR T++EIDKWKR
Subjt:  GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR

A0A6J1F360 keratin, type II cytoskeletal 2 epidermal isoform X28.0e-6386.11Show/hide
Query:  MPRNMNGNRNQDGEDERGLLWNLPVLKSSRFGNLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNG+R++ GEDE G+LW LPVLKSSR G LGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYG GRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRNQDGEDERGLLWNLPVLKSSRFGNLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR
        GD+L GRQSIFP QD+IGALVD+L LNTK+LIR T++EIDKWKR
Subjt:  GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR

A0A6J1ICW2 keratin, type II cytoskeletal 3 isoform X13.2e-6485.42Show/hide
Query:  MPRNMNGNRNQDGEDERGLLWNLPVLKSSRFGNLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNG+R + GEDE G+LW LPVLKSSR G LGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYG GRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRNQDGEDERGLLWNLPVLKSSRFGNLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR
        GD+L GRQSIFPH+D+IGA+VD+L LNTK+LI+ T+KEIDKWKR
Subjt:  GDVLRGRQSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G27695.1 glycine-rich protein7.5e-0555.17Show/hide
Query:  SRFGNLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVG
        S F  +G  FG GVGC  GFG+G     GFG G+P   LG G G GCGVGLG G+G G
Subjt:  SRFGNLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVG

AT1G27695.2 glycine-rich protein7.5e-0555.17Show/hide
Query:  SRFGNLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVG
        S F  +G  FG GVGC  GFG+G     GFG G+P   LG G G GCGVGLG G+G G
Subjt:  SRFGNLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVG

AT1G66820.1 glycine-rich protein9.5e-0851.43Show/hide
Query:  LGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQ-----LGFGLGAGCGVGLGFGYGVGRGIAQDD-KRRY
        +GP  G G+GCG G GIGL GG G G    GL      LGFG+G G G G G+G+GVG G + DD K R+
Subjt:  LGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQ-----LGFGLGAGCGVGLGFGYGVGRGIAQDD-KRRY

AT4G10330.1 glycine-rich protein2.5e-4057.04Show/hide
Query:  NRNQDGEDERGLLWNLPVLKSSRFGNLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNVGDVLRGR
        NR + G+D++GLLW LP ++    G +GPAFGLGVGCG GFG GL+GG GFGPG+PGLQ G G GAGCG+G+GFGYGVGRG A D  R Y NVG      
Subjt:  NRNQDGEDERGLLWNLPVLKSSRFGNLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNVGDVLRGR

Query:  QSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKW
            P  +++ +L+D+LV++TK+L++AT+ EIDKW
Subjt:  QSIFPHQDDIGALVDDLVLNTKRLIRATSKEIDKW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCACGAAATATGAACGGAAACAGAAACCAAGACGGAGAAGATGAGAGGGGATTATTGTGGAATCTTCCCGTTCTTAAATCTTCCAGATTCGGAAATTTAGGCCCCGC
CTTCGGTCTCGGCGTTGGTTGTGGCGTCGGCTTTGGCATCGGCCTCGTCGGAGGTGCTGGATTTGGTCCAGGAATTCCTGGCTTACAGCTTGGCTTTGGTCTTGGTGCTG
GATGTGGAGTTGGCTTAGGATTTGGCTATGGTGTTGGCAGGGGTATTGCCCAAGATGACAAACGCAGATACTCAAACGTTGGGGATGTATTGCGTGGTCGTCAAAGTATT
TTTCCTCATCAGGACGATATCGGCGCGCTTGTTGACGACCTTGTCCTAAATACAAAGAGGCTTATCCGAGCTACTTCAAAGGAGATTGACAAGTGGAAAAGATGA
mRNA sequenceShow/hide mRNA sequence
ATCATATTCTTTATTCGTTCGGAGGAGGAGGAAGAGGAACAAAGAAATCAGAAATGCCACGAAATATGAACGGAAACAGAAACCAAGACGGAGAAGATGAGAGGGGATTA
TTGTGGAATCTTCCCGTTCTTAAATCTTCCAGATTCGGAAATTTAGGCCCCGCCTTCGGTCTCGGCGTTGGTTGTGGCGTCGGCTTTGGCATCGGCCTCGTCGGAGGTGC
TGGATTTGGTCCAGGAATTCCTGGCTTACAGCTTGGCTTTGGTCTTGGTGCTGGATGTGGAGTTGGCTTAGGATTTGGCTATGGTGTTGGCAGGGGTATTGCCCAAGATG
ACAAACGCAGATACTCAAACGTTGGGGATGTATTGCGTGGTCGTCAAAGTATTTTTCCTCATCAGGACGATATCGGCGCGCTTGTTGACGACCTTGTCCTAAATACAAAG
AGGCTTATCCGAGCTACTTCAAAGGAGATTGACAAGTGGAAAAGATGAAATTTTACTCATTTGTTATTACATTGTACAAGTCTATTACGAACAACAACAATCAAAACTGA
AGAACAAAGAAACGTGCTGGCTGACATATGGTATGTTATTACTTCGGCTTTTAGAGGCAGAATTTATGTACAATTGTTTAGAAAGATGTATTTAACCTCTAAATCTCATA
TGCATTGGGTTTTGAGCAATCTTAAAATGCCAAATGCTTAATGTATTAGTTTAGGTCCCTAGATGGCTGATTTATCATTGTGTGTATTGGCATTGGTTACGTGCGCCCGT
AGTTAAAAGGTGAAATTTTGCTAATTCGGTCATTAGTCGTTCTTATACAAACGTCAAGTTGTG
Protein sequenceShow/hide protein sequence
MPRNMNGNRNQDGEDERGLLWNLPVLKSSRFGNLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNVGDVLRGRQSI
FPHQDDIGALVDDLVLNTKRLIRATSKEIDKWKR