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CSPI05G30930 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G30930
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionsuccinate dehydrogenase assembly factor 1, mitochondrial
Genome locationChr5:28652940..28653485
RNA-Seq ExpressionCSPI05G30930
SyntenyCSPI05G30930
Gene Ontology termsGO:0034553 - mitochondrial respiratory chain complex II assembly (biological process)
GO:0005739 - mitochondrion (cellular component)
InterPro domainsIPR008011 - Complex 1 LYR protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008459591.1 PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Cucumis melo]2.1e-3697.7Show/hide
Query:  MAKLSGLQKQVLSLYRAFLRAARAKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP
        MAKLSGLQKQVLSLYRAFLRAAR KSVEDRQQMESIVA EFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP
Subjt:  MAKLSGLQKQVLSLYRAFLRAARAKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP

XP_011656085.1 succinate dehydrogenase assembly factor 1, mitochondrial [Cucumis sativus]5.5e-3798.85Show/hide
Query:  MAKLSGLQKQVLSLYRAFLRAARAKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP
        MAKLSGLQKQVLSLYRAFLRAAR KSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP
Subjt:  MAKLSGLQKQVLSLYRAFLRAARAKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP

XP_022141880.1 succinate dehydrogenase assembly factor 1, mitochondrial [Momordica charantia]1.0e-2786.25Show/hide
Query:  KLSGLQKQVLSLYRAFLRAARAKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLD
        KLSGLQKQVLSLYR FLRAAR+KS EDR+QMES+VA EFRRNA QID KNFIYIEYLLRRGNKQLDQLKSPATVRLS+++
Subjt:  KLSGLQKQVLSLYRAFLRAARAKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLD

XP_023525064.1 succinate dehydrogenase assembly factor 1, mitochondrial [Cucurbita pepo subsp. pepo]4.0e-2780Show/hide
Query:  KLSGLQKQVLSLYRAFLRAARAKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP
        KLSG+Q+QVLSLYRAFLRAAR+KS EDR+Q+ES+V+ EFRRNAK IDRKNFIYIEYLLRRGNKQLDQL+SPATV LS+L  N  P
Subjt:  KLSGLQKQVLSLYRAFLRAARAKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP

XP_038890134.1 succinate dehydrogenase assembly factor 1, mitochondrial [Benincasa hispida]2.7e-3186.21Show/hide
Query:  MAKLSGLQKQVLSLYRAFLRAARAKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP
        MAKLSGLQKQVLSLYRAFLRAAR+KS EDR+Q+ESIVA EFRRNAKQIDRKNFI+IEYLLRRGNKQLDQLKSP TVR ST++P+ EP
Subjt:  MAKLSGLQKQVLSLYRAFLRAARAKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP

TrEMBL top hitse value%identityAlignment
A0A0A0KST3 Uncharacterized protein2.7e-3798.85Show/hide
Query:  MAKLSGLQKQVLSLYRAFLRAARAKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP
        MAKLSGLQKQVLSLYRAFLRAAR KSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP
Subjt:  MAKLSGLQKQVLSLYRAFLRAARAKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP

A0A1S3CAJ2 succinate dehydrogenase assembly factor 1, mitochondrial1.0e-3697.7Show/hide
Query:  MAKLSGLQKQVLSLYRAFLRAARAKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP
        MAKLSGLQKQVLSLYRAFLRAAR KSVEDRQQMESIVA EFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP
Subjt:  MAKLSGLQKQVLSLYRAFLRAARAKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP

A0A2P5FEM4 LYR motif-containing protein1.4e-2577.5Show/hide
Query:  KLSGLQKQVLSLYRAFLRAARAKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLD
        +LSG+QKQVLSLYR FLRAAR+KS E+R ++ESIV+TEFRRNAKQ+DRKNFIYIEYLLRRG KQLDQLK+P T+ LS+ D
Subjt:  KLSGLQKQVLSLYRAFLRAARAKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLD

A0A6J1CJC1 succinate dehydrogenase assembly factor 1, mitochondrial5.1e-2886.25Show/hide
Query:  KLSGLQKQVLSLYRAFLRAARAKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLD
        KLSGLQKQVLSLYR FLRAAR+KS EDR+QMES+VA EFRRNA QID KNFIYIEYLLRRGNKQLDQLKSPATVRLS+++
Subjt:  KLSGLQKQVLSLYRAFLRAARAKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLD

A0A6J1EX50 LOW QUALITY PROTEIN: succinate dehydrogenase assembly factor 1, mitochondrial1.6e-2678.82Show/hide
Query:  KLSGLQKQVLSLYRAFLRAARAKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP
        KLSG+QKQVLSLY AFLRAAR+KS EDR+++ES+V+ EFRRNAK IDRK+FIYIEYLLRRGNKQLDQL+SPATV LSTL  N  P
Subjt:  KLSGLQKQVLSLYRAFLRAARAKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP

SwissProt top hitse value%identityAlignment
A6ZYX9 Succinate dehydrogenase assembly factor 1, mitochondrial6.9e-0642.25Show/hide
Query:  KLSGLQKQVLSLYRAFLRAARAKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSP
        +LSGLQK+VL LYRA +R A  K  E++    + +  EF +  + + RK+F  IE+LLR GNK++     P
Subjt:  KLSGLQKQVLSLYRAFLRAARAKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSP

B0K036 Succinate dehydrogenase assembly factor 1, mitochondrial6.2e-0742.86Show/hide
Query:  MAKLSGLQKQVLSLYRAFLRAARAKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTL----DPNPEP
        M++LS LQ+QVLSLYR  LRA R K        E+ V  EFR++A  + R + + IEYL RRG +QL  L+S     + T      P  EP
Subjt:  MAKLSGLQKQVLSLYRAFLRAARAKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTL----DPNPEP

Q3E785 Succinate dehydrogenase assembly factor 1, mitochondrial6.9e-0642.25Show/hide
Query:  KLSGLQKQVLSLYRAFLRAARAKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSP
        +LSGLQK+VL LYRA +R A  K  E++    + +  EF +  + + RK+F  IE+LLR GNK++     P
Subjt:  KLSGLQKQVLSLYRAFLRAARAKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSP

Q54HG5 Succinate dehydrogenase assembly factor 1A, mitochondrial1.8e-0641.43Show/hide
Query:  SGLQKQVLSLYRAFLRAARAKSVED-RQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSP
        SGLQK VLSLYR+FLR +  K +++    + + + T+FR  A  I +++   IE LL +G +QL+Q++ P
Subjt:  SGLQKQVLSLYRAFLRAARAKSVED-RQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSP

Q9US02 Succinate dehydrogenase assembly factor 1, mitochondrial2.4e-0642.86Show/hide
Query:  LSGLQKQVLSLYRAFLRAARAKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSP
        LSGLQ+QV+  YR  L AA+AK     ++  + V  EFR+N + I +++F YIE+LLR G +Q +    P
Subjt:  LSGLQKQVLSLYRAFLRAARAKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSP

Arabidopsis top hitse value%identityAlignment
AT2G39725.1 LYR family of Fe/S cluster biogenesis protein2.7e-2671.25Show/hide
Query:  AKLSGLQKQVLSLYRAFLRAARAKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTL
        +KLSG+QKQVLSLYR FLRAAR++ +EDR+++E IV+TEFR N+K++DRKNF YIEYLLR G KQLDQLKSPA V LS++
Subjt:  AKLSGLQKQVLSLYRAFLRAARAKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTL

AT2G39725.2 LYR family of Fe/S cluster biogenesis protein2.7e-2671.25Show/hide
Query:  AKLSGLQKQVLSLYRAFLRAARAKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTL
        +KLSG+QKQVLSLYR FLRAAR++ +EDR+++E IV+TEFR N+K++DRKNF YIEYLLR G KQLDQLKSPA V LS++
Subjt:  AKLSGLQKQVLSLYRAFLRAARAKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAAGCTTTCAGGGTTGCAAAAGCAAGTGCTCAGTCTCTACAGAGCATTTCTCCGAGCAGCTCGCGCCAAATCGGTTGAAGATCGACAGCAAATGGAATCAATTGT
CGCCACCGAGTTTCGCCGCAACGCCAAGCAAATTGATCGTAAAAATTTCATCTATATCGAGTACCTTCTTCGTCGAGGTAACAAACAGTTGGATCAACTTAAAAGTCCTG
CCACCGTTCGGTTGTCTACGCTCGATCCCAATCCTGAGCCTTGA
mRNA sequenceShow/hide mRNA sequence
CTTTCTTTCTCTCACTCTCATCTCATCTGAGCCCTAGCTTCGATCATCCTCACCGACGAGGGCATTACGATCAACTACACACACCCCAAGTTCTTGATTTGTTTCTTCAC
CGTTGCCATTCTAATTTGACCTAAATGATTTCAAGAAGATTATGATAGGTAGGGTTAATTAGTATTGGGGAGGAAGCTACAATGGCGAAGCTTTCAGGGTTGCAAAAGCA
AGTGCTCAGTCTCTACAGAGCATTTCTCCGAGCAGCTCGCGCCAAATCGGTTGAAGATCGACAGCAAATGGAATCAATTGTCGCCACCGAGTTTCGCCGCAACGCCAAGC
AAATTGATCGTAAAAATTTCATCTATATCGAGTACCTTCTTCGTCGAGGTAACAAACAGTTGGATCAACTTAAAAGTCCTGCCACCGTTCGGTTGTCTACGCTCGATCCC
AATCCTGAGCCTTGAAATTGTGTGTACATTTCTTCGATTATTGGCTATTACTGTTCTTCGTACGATCAATTTTGAACCCTAGAAATTAAACTGCTTTCTTTCTTTC
Protein sequenceShow/hide protein sequence
MAKLSGLQKQVLSLYRAFLRAARAKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP