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CSPI06G00270 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G00270
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationChr6:249760..250089
RNA-Seq ExpressionCSPI06G00270
SyntenyCSPI06G00270
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045262.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.1e-3775.23Show/hide
Query:  MFLVKLTEFEPLLDSTYFLALYSNNNAHVKFTPGKLFLIVSNRFPNFIATLQLSPRWFTNFSVDHVHSSKVSLESFHDAMLDGGEFSTMSIHLLDKTNQM
        MFLVKL  F+PLLD+T FLA  S +NA +KFTP K F+I S+R P FIATLQLSP+WFT FSVD+ HSSKVSLESFHDA+LDGG F++M+IHLLDKTNQM
Subjt:  MFLVKLTEFEPLLDSTYFLALYSNNNAHVKFTPGKLFLIVSNRFPNFIATLQLSPRWFTNFSVDHVHSSKVSLESFHDAMLDGGEFSTMSIHLLDKTNQM

Query:  ILRFDTPSS
        ILRFDTPSS
Subjt:  ILRFDTPSS

TYK02994.1 uncharacterized protein E5676_scaffold46G00830 [Cucumis melo var. makuwa]3.1e-4585.32Show/hide
Query:  MFLVKLTEFEPLLDSTYFLALYSNNNAHVKFTPGKLFLIVSNRFPNFIATLQLSPRWFTNFSVDHVHSSKVSLESFHDAMLDGGEFSTMSIHLLDKTNQM
        MFLVKLTEFEPLLDST +LA YSN+NA +KF PGKLFLIV NR P F ATLQLSPRWF+N+SVDHVHSSKVSLESFHDAMLDGG+FS+MSIHLLDKTNQM
Subjt:  MFLVKLTEFEPLLDSTYFLALYSNNNAHVKFTPGKLFLIVSNRFPNFIATLQLSPRWFTNFSVDHVHSSKVSLESFHDAMLDGGEFSTMSIHLLDKTNQM

Query:  ILRFDTPSS
         LRFDTPSS
Subjt:  ILRFDTPSS

XP_008464344.1 PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo]1.1e-3775.23Show/hide
Query:  MFLVKLTEFEPLLDSTYFLALYSNNNAHVKFTPGKLFLIVSNRFPNFIATLQLSPRWFTNFSVDHVHSSKVSLESFHDAMLDGGEFSTMSIHLLDKTNQM
        MFLVKL  F+PLLD+T FLA  S +NA +KFTP K F+I S+R P FIATLQLSP+WFT FSVD+ HSSKVSLESFHDA+LDGG F++M+IHLLDKTNQM
Subjt:  MFLVKLTEFEPLLDSTYFLALYSNNNAHVKFTPGKLFLIVSNRFPNFIATLQLSPRWFTNFSVDHVHSSKVSLESFHDAMLDGGEFSTMSIHLLDKTNQM

Query:  ILRFDTPSS
        ILRFDTPSS
Subjt:  ILRFDTPSS

XP_031743957.1 uncharacterized protein LOC116404737 [Cucumis sativus]2.1e-54100Show/hide
Query:  MFLVKLTEFEPLLDSTYFLALYSNNNAHVKFTPGKLFLIVSNRFPNFIATLQLSPRWFTNFSVDHVHSSKVSLESFHDAMLDGGEFSTMSIHLLDKTNQM
        MFLVKLTEFEPLLDSTYFLALYSNNNAHVKFTPGKLFLIVSNRFPNFIATLQLSPRWFTNFSVDHVHSSKVSLESFHDAMLDGGEFSTMSIHLLDKTNQM
Subjt:  MFLVKLTEFEPLLDSTYFLALYSNNNAHVKFTPGKLFLIVSNRFPNFIATLQLSPRWFTNFSVDHVHSSKVSLESFHDAMLDGGEFSTMSIHLLDKTNQM

Query:  ILRFDTPSS
        ILRFDTPSS
Subjt:  ILRFDTPSS

XP_031743987.1 uncharacterized protein LOC116404759 [Cucumis sativus]6.3e-3875.23Show/hide
Query:  MFLVKLTEFEPLLDSTYFLALYSNNNAHVKFTPGKLFLIVSNRFPNFIATLQLSPRWFTNFSVDHVHSSKVSLESFHDAMLDGGEFSTMSIHLLDKTNQM
        MFLVKLT F+PLLD+T F A  S ++A VKFTP K F+I S+R P FIATLQLSP+WFT+FSVDH HSSKVSLESFHDA+LDGG F++M+IHLLDKTNQ+
Subjt:  MFLVKLTEFEPLLDSTYFLALYSNNNAHVKFTPGKLFLIVSNRFPNFIATLQLSPRWFTNFSVDHVHSSKVSLESFHDAMLDGGEFSTMSIHLLDKTNQM

Query:  ILRFDTPSS
        ILRFDTPSS
Subjt:  ILRFDTPSS

TrEMBL top hitse value%identityAlignment
A0A0A0K902 Uncharacterized protein3.0e-3875.23Show/hide
Query:  MFLVKLTEFEPLLDSTYFLALYSNNNAHVKFTPGKLFLIVSNRFPNFIATLQLSPRWFTNFSVDHVHSSKVSLESFHDAMLDGGEFSTMSIHLLDKTNQM
        MFLVKLT F+PLLD+T F A  S ++A VKFTP K F+I S+R P FIATLQLSP+WFT+FSVDH HSSKVSLESFHDA+LDGG F++M+IHLLDKTNQ+
Subjt:  MFLVKLTEFEPLLDSTYFLALYSNNNAHVKFTPGKLFLIVSNRFPNFIATLQLSPRWFTNFSVDHVHSSKVSLESFHDAMLDGGEFSTMSIHLLDKTNQM

Query:  ILRFDTPSS
        ILRFDTPSS
Subjt:  ILRFDTPSS

A0A0A0K9W4 Uncharacterized protein1.0e-54100Show/hide
Query:  MFLVKLTEFEPLLDSTYFLALYSNNNAHVKFTPGKLFLIVSNRFPNFIATLQLSPRWFTNFSVDHVHSSKVSLESFHDAMLDGGEFSTMSIHLLDKTNQM
        MFLVKLTEFEPLLDSTYFLALYSNNNAHVKFTPGKLFLIVSNRFPNFIATLQLSPRWFTNFSVDHVHSSKVSLESFHDAMLDGGEFSTMSIHLLDKTNQM
Subjt:  MFLVKLTEFEPLLDSTYFLALYSNNNAHVKFTPGKLFLIVSNRFPNFIATLQLSPRWFTNFSVDHVHSSKVSLESFHDAMLDGGEFSTMSIHLLDKTNQM

Query:  ILRFDTPSS
        ILRFDTPSS
Subjt:  ILRFDTPSS

A0A1S3CL88 uncharacterized protein LOC1035022505.2e-3875.23Show/hide
Query:  MFLVKLTEFEPLLDSTYFLALYSNNNAHVKFTPGKLFLIVSNRFPNFIATLQLSPRWFTNFSVDHVHSSKVSLESFHDAMLDGGEFSTMSIHLLDKTNQM
        MFLVKL  F+PLLD+T FLA  S +NA +KFTP K F+I S+R P FIATLQLSP+WFT FSVD+ HSSKVSLESFHDA+LDGG F++M+IHLLDKTNQM
Subjt:  MFLVKLTEFEPLLDSTYFLALYSNNNAHVKFTPGKLFLIVSNRFPNFIATLQLSPRWFTNFSVDHVHSSKVSLESFHDAMLDGGEFSTMSIHLLDKTNQM

Query:  ILRFDTPSS
        ILRFDTPSS
Subjt:  ILRFDTPSS

A0A5D3BV00 Uncharacterized protein1.5e-4585.32Show/hide
Query:  MFLVKLTEFEPLLDSTYFLALYSNNNAHVKFTPGKLFLIVSNRFPNFIATLQLSPRWFTNFSVDHVHSSKVSLESFHDAMLDGGEFSTMSIHLLDKTNQM
        MFLVKLTEFEPLLDST +LA YSN+NA +KF PGKLFLIV NR P F ATLQLSPRWF+N+SVDHVHSSKVSLESFHDAMLDGG+FS+MSIHLLDKTNQM
Subjt:  MFLVKLTEFEPLLDSTYFLALYSNNNAHVKFTPGKLFLIVSNRFPNFIATLQLSPRWFTNFSVDHVHSSKVSLESFHDAMLDGGEFSTMSIHLLDKTNQM

Query:  ILRFDTPSS
         LRFDTPSS
Subjt:  ILRFDTPSS

A0A5D3DZ07 LINE-1 retrotransposable element ORF2 protein5.2e-3875.23Show/hide
Query:  MFLVKLTEFEPLLDSTYFLALYSNNNAHVKFTPGKLFLIVSNRFPNFIATLQLSPRWFTNFSVDHVHSSKVSLESFHDAMLDGGEFSTMSIHLLDKTNQM
        MFLVKL  F+PLLD+T FLA  S +NA +KFTP K F+I S+R P FIATLQLSP+WFT FSVD+ HSSKVSLESFHDA+LDGG F++M+IHLLDKTNQM
Subjt:  MFLVKLTEFEPLLDSTYFLALYSNNNAHVKFTPGKLFLIVSNRFPNFIATLQLSPRWFTNFSVDHVHSSKVSLESFHDAMLDGGEFSTMSIHLLDKTNQM

Query:  ILRFDTPSS
        ILRFDTPSS
Subjt:  ILRFDTPSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTTGGTCAAGCTTACAGAGTTTGAGCCTCTTCTTGACTCAACCTACTTTCTTGCTCTATATTCCAACAACAATGCCCACGTGAAATTCACACCAGGGAAGCTCTT
CTTAATCGTCTCGAACCGTTTCCCGAACTTCATTGCAACGCTACAATTGTCGCCAAGATGGTTCACCAACTTTTCCGTTGATCATGTTCATAGTTCTAAGGTTTCCCTTG
AATCCTTCCATGATGCTATGTTGGATGGTGGAGAATTTTCTACAATGTCAATTCATCTTTTGGACAAAACAAACCAAATGATCCTTAGATTTGATACTCCTTCAAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCTTGGTCAAGCTTACAGAGTTTGAGCCTCTTCTTGACTCAACCTACTTTCTTGCTCTATATTCCAACAACAATGCCCACGTGAAATTCACACCAGGGAAGCTCTT
CTTAATCGTCTCGAACCGTTTCCCGAACTTCATTGCAACGCTACAATTGTCGCCAAGATGGTTCACCAACTTTTCCGTTGATCATGTTCATAGTTCTAAGGTTTCCCTTG
AATCCTTCCATGATGCTATGTTGGATGGTGGAGAATTTTCTACAATGTCAATTCATCTTTTGGACAAAACAAACCAAATGATCCTTAGATTTGATACTCCTTCAAGTTAG
Protein sequenceShow/hide protein sequence
MFLVKLTEFEPLLDSTYFLALYSNNNAHVKFTPGKLFLIVSNRFPNFIATLQLSPRWFTNFSVDHVHSSKVSLESFHDAMLDGGEFSTMSIHLLDKTNQMILRFDTPSS