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CSPI06G00290 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G00290
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationChr6:256135..256769
RNA-Seq ExpressionCSPI06G00290
SyntenyCSPI06G00290
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047513.1 hypothetical protein E6C27_scaffold498G001420 [Cucumis melo var. makuwa]5.9e-2454.95Show/hide
Query:  MLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDI
        M+ +P+PLFAEY V R+HI  VSL  LH AL  G+T+++L I ++EEQN I L FE S  S +P+ R++ F VPMEDWS G + FD K FSIES+LF DI
Subjt:  MLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDI

Query:  ITTFYDYNEVD
        I  F  +NE D
Subjt:  ITTFYDYNEVD

KGN45637.1 hypothetical protein Csa_005027 [Cucumis sativus]6.0e-85100Show/hide
Query:  MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNII
        MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNII
Subjt:  MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNII

Query:  CLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDTSN
        CLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDTSN
Subjt:  CLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDTSN

KGN61523.1 hypothetical protein Csa_006491 [Cucumis sativus]9.3e-3066.36Show/hide
Query:  MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNII
        MFSIK+D LDP LDA SLFT+ +ND+ICLKFS STFS+IARYQ P FFAMLF+P PLF EY V R+HI R+SL     AL  GQ+YSS+ IHL+E QN I
Subjt:  MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNII

Query:  CLAFEPS
           FEPS
Subjt:  CLAFEPS

TYK26483.1 hypothetical protein E5676_scaffold313G00490 [Cucumis melo var. makuwa]5.9e-2454.95Show/hide
Query:  MLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDI
        M+ +P+PLFAEY V R+HI  VSL  LH AL  G+T+++L I ++EEQN I L FE S  S +P+ R++ F VPMEDWS G + FD K FSIES+LF DI
Subjt:  MLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDI

Query:  ITTFYDYNEVD
        I  F  +NE D
Subjt:  ITTFYDYNEVD

XP_031736681.1 uncharacterized protein LOC116402062 [Cucumis sativus]8.1e-4255.9Show/hide
Query:  MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNII
        MFSIKID +DP LDA  LF ++ +D+ICLKF  ST SII RY+ P FF  + +P+PLF EY V R+HI R+SLLS ++AL   QT+++L IHLQE+QN I
Subjt:  MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNII

Query:  CLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDT
         L FEPS  S +P+ R++ F VPMEDWS  +++FD K FSIES LF DII  F  + E +T
Subjt:  CLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDT

TrEMBL top hitse value%identityAlignment
A0A0A0KB76 Uncharacterized protein2.9e-85100Show/hide
Query:  MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNII
        MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNII
Subjt:  MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNII

Query:  CLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDTSN
        CLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDTSN
Subjt:  CLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDTSN

A0A0A0LIE0 Uncharacterized protein4.5e-3066.36Show/hide
Query:  MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNII
        MFSIK+D LDP LDA SLFT+ +ND+ICLKFS STFS+IARYQ P FFAMLF+P PLF EY V R+HI R+SL     AL  GQ+YSS+ IHL+E QN I
Subjt:  MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNII

Query:  CLAFEPS
           FEPS
Subjt:  CLAFEPS

A0A5A7TVD7 Uncharacterized protein2.8e-2454.95Show/hide
Query:  MLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDI
        M+ +P+PLFAEY V R+HI  VSL  LH AL  G+T+++L I ++EEQN I L FE S  S +P+ R++ F VPMEDWS G + FD K FSIES+LF DI
Subjt:  MLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDI

Query:  ITTFYDYNEVD
        I  F  +NE D
Subjt:  ITTFYDYNEVD

A0A5D3DSC2 Uncharacterized protein2.8e-2454.95Show/hide
Query:  MLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDI
        M+ +P+PLFAEY V R+HI  VSL  LH AL  G+T+++L I ++EEQN I L FE S  S +P+ R++ F VPMEDWS G + FD K FSIES+LF DI
Subjt:  MLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDI

Query:  ITTFYDYNEVD
        I  F  +NE D
Subjt:  ITTFYDYNEVD

A0A6J1H2Z8 uncharacterized protein LOC1114600111.1e-1540.4Show/hide
Query:  MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNII
        MF +++   DPL++A S+   I N+   LKFS S FS+I  Y    F A   I    FA YFV R+H  RVSL S + A+  G  +SS+ IH  E  + +
Subjt:  MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNII

Query:  CLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDIIT
         L FE S H+ + M R ++   P ++   G+I  D + FSI S  FRDIIT
Subjt:  CLAFEPSRHSPVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDIIT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTCTATCAAGATTGACAAACTTGATCCTCTCTTGGATGCAATCTCCCTCTTCACCGATATCGTAAACGACAAAATCTGCCTGAAATTCTCGCTGTCGACGTTCTC
AATAATTGCTCGGTACCAACACCCTTTCTTCTTTGCAATGTTGTTTATACCGGAACCGTTGTTCGCCGAGTATTTCGTTGGCCGGGATCACATTTTAAGGGTTTCCCTCC
TGTCCTTGCACACTGCTTTGGCAAGAGGTCAAACCTATTCCTCATTGAGAATCCATCTTCAAGAAGAACAGAATATTATATGTCTTGCATTTGAGCCTTCAAGGCATTCA
CCAGTACCAATGCGTCGTAAAATGAGATTCGAAGTGCCTATGGAAGATTGGTCTGCTGGAGAAATTGACTTTGATGCAAAGAGTTTCTCCATTGAGTCAGATTTGTTTAG
AGATATTATAACAACATTTTATGATTACAATGAAGTTGATACAAGTAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCTCTATCAAGATTGACAAACTTGATCCTCTCTTGGATGCAATCTCCCTCTTCACCGATATCGTAAACGACAAAATCTGCCTGAAATTCTCGCTGTCGACGTTCTC
AATAATTGCTCGGTACCAACACCCTTTCTTCTTTGCAATGTTGTTTATACCGGAACCGTTGTTCGCCGAGTATTTCGTTGGCCGGGATCACATTTTAAGGGTTTCCCTCC
TGTCCTTGCACACTGCTTTGGCAAGAGGTCAAACCTATTCCTCATTGAGAATCCATCTTCAAGAAGAACAGAATATTATATGTCTTGCATTTGAGCCTTCAAGGCATTCA
CCAGTACCAATGCGTCGTAAAATGAGATTCGAAGTGCCTATGGAAGATTGGTCTGCTGGAGAAATTGACTTTGATGCAAAGAGTTTCTCCATTGAGTCAGATTTGTTTAG
AGATATTATAACAACATTTTATGATTACAATGAAGTTGATACAAGTAATTAA
Protein sequenceShow/hide protein sequence
MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAEYFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHS
PVPMRRKMRFEVPMEDWSAGEIDFDAKSFSIESDLFRDIITTFYDYNEVDTSN