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CSPI06G00300 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G00300
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationChr6:263517..263852
RNA-Seq ExpressionCSPI06G00300
SyntenyCSPI06G00300
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575236.1 hypothetical protein SDJN03_25875, partial [Cucurbita argyrosperma subsp. sororia]4.7e-1749.06Show/hide
Query:  MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSH
        MF FILD+ H   +A+  +A +  +  LKFS E  SIM + +P  +C IA+QL PP+F Q Y+C  LHYSWI I+  FP M  L R GFSSL+FSF   +
Subjt:  MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSH

Query:  HADLTF
         A+L F
Subjt:  HADLTF

KGN45638.2 hypothetical protein Csa_005465, partial [Cucumis sativus]1.0e-56100Show/hide
Query:  MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSH
        MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSH
Subjt:  MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSH

Query:  HADLTFCSRD
        HADLTFCSRD
Subjt:  HADLTFCSRD

TYK02997.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.2e-5394.59Show/hide
Query:  MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSH
        MFVFIL+EIHSFVDAVS LAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYIN FFPEMF +ERTGFSSLTFSFADS 
Subjt:  MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSH

Query:  HADLTFCSRDG
        HADLTFCSRDG
Subjt:  HADLTFCSRDG

WP_217833378.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]7.8e-2882.89Show/hide
Query:  ILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPE
        +LDEIH FVDA+S LAGL YVF+LKFSP+MFSIM N TPS  CTIALQLFPPFFNQ YSCQQLHYSWIYIN FFPE
Subjt:  ILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPE

XP_023548336.1 uncharacterized protein LOC111807004 [Cucurbita pepo subsp. pepo]3.1e-1655.21Show/hide
Query:  IHSFVDAVSALA-GLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHAD
        +H  VDA S LA     +F++KFSP MFSIMA  TPS  C IALQL P FFN  Y C QLHY +IYI  F+  M + ER GFSSLTF+F +    D
Subjt:  IHSFVDAVSALA-GLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHAD

TrEMBL top hitse value%identityAlignment
A0A0A0K833 Uncharacterized protein1.0e-57100Show/hide
Query:  MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSH
        MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSH
Subjt:  MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSH

Query:  HADLTFCSRDG
        HADLTFCSRDG
Subjt:  HADLTFCSRDG

A0A5D3BU35 LINE-1 retrotransposable element ORF2 protein4.4e-5394.59Show/hide
Query:  MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSH
        MFVFIL+EIHSFVDAVS LAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYIN FFPEMF +ERTGFSSLTFSFADS 
Subjt:  MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSH

Query:  HADLTFCSRDG
        HADLTFCSRDG
Subjt:  HADLTFCSRDG

A0A6J1H4N0 uncharacterized protein LOC1114600097.4e-1654.17Show/hide
Query:  IHSFVDAVSALA-GLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHAD
        +H  VDA S LA     +F++KFSP MFSIMA  TPS  C I LQL P FFN  Y C QLHY +IYI  F+  M + ER GFSSLTF+F +    D
Subjt:  IHSFVDAVSALA-GLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHAD

A0A6J1KWL1 uncharacterized protein LOC1114988881.9e-1655.21Show/hide
Query:  IHSFVDAVSALA-GLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHAD
        +H  VDA S LA     +F++KFSP MFSIMA  TPS  C IALQL P FFN  Y C QLHY +IYI  F+  M + ER GFSSLTF+F +    D
Subjt:  IHSFVDAVSALA-GLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHAD

A0A6J1L2R2 uncharacterized protein LOC1114993082.9e-1238.74Show/hide
Query:  MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSH
        +F F+L+++   VDA S +A    + ++KFS EMF+IMA+  P+    IAL L+P FF+ +Y C +L  SW ++ + FP M  +E +GF+SL+F+     
Subjt:  MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSH

Query:  HADLTFCSRDG
         A+L F + +G
Subjt:  HADLTFCSRDG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGTCTTCATACTCGACGAAATCCACAGCTTCGTCGATGCCGTCTCCGCCCTCGCCGGCCTTGGCTACGTATTCAATCTCAAATTCTCACCAGAAATGTTCTCAAT
AATGGCCAACCCCACACCTTCCCCTTCTTGTACCATAGCCCTTCAACTATTTCCTCCATTCTTCAATCAACAATATTCCTGCCAACAACTTCACTACTCATGGATTTACA
TCAACCACTTTTTCCCCGAAATGTTCCATTTGGAACGAACCGGTTTTTCTTCGCTCACATTCTCTTTCGCAGATTCGCATCATGCCGACCTCACATTTTGCAGCCGTGAT
GGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCGTCTTCATACTCGACGAAATCCACAGCTTCGTCGATGCCGTCTCCGCCCTCGCCGGCCTTGGCTACGTATTCAATCTCAAATTCTCACCAGAAATGTTCTCAAT
AATGGCCAACCCCACACCTTCCCCTTCTTGTACCATAGCCCTTCAACTATTTCCTCCATTCTTCAATCAACAATATTCCTGCCAACAACTTCACTACTCATGGATTTACA
TCAACCACTTTTTCCCCGAAATGTTCCATTTGGAACGAACCGGTTTTTCTTCGCTCACATTCTCTTTCGCAGATTCGCATCATGCCGACCTCACATTTTGCAGCCGTGAT
GGTTAG
Protein sequenceShow/hide protein sequence
MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHADLTFCSRD
G