; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI06G01840 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G01840
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationChr6:1369934..1370608
RNA-Seq ExpressionCSPI06G01840
SyntenyCSPI06G01840
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN45805.1 hypothetical protein Csa_005190 [Cucumis sativus]4.0e-10497.96Show/hide
Query:  MGIEHHLTEEKKHDDEAANKEESSKDDPSHVVWITYDGLLISWLLEIISEDVFNMIEGTNTTFPKGFSTLDEHLKKIKHLCDKLAAMKKPHDDVIKVFRL
        MGIEHHLTEEKKHDDEAANKEESSKDDPSHVVWITYDGLLISWLLEII EDVFNMIEGTNTTF KGFSTLDEHLKKIKHLCDKLAAMKKPHDDVIKVFRL
Subjt:  MGIEHHLTEEKKHDDEAANKEESSKDDPSHVVWITYDGLLISWLLEIISEDVFNMIEGTNTTFPKGFSTLDEHLKKIKHLCDKLAAMKKPHDDVIKVFRL

Query:  ARGLGSRYQGFRTTMLSKPANPSFNQSVVVVKAHDEMLSSELEEENFVQINHAQAFYDQKGRNRGRGRQFLFSWKRFSLKANFKEIQASSKHQNQP
        ARGLGSRYQGFRTTMLSKPANPSFNQSVVVVKAHDEMLSSELEEENFVQINHAQAFY+QKGRNRGRGRQFLFSWKRFSLKANFKEIQ+SSKHQNQP
Subjt:  ARGLGSRYQGFRTTMLSKPANPSFNQSVVVVKAHDEMLSSELEEENFVQINHAQAFYDQKGRNRGRGRQFLFSWKRFSLKANFKEIQASSKHQNQP

RVW19921.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]7.0e-3236.94Show/hide
Query:  MGIEHHLTEEKKHDDEAANKEESSKDDPSHVVWITYDGLLISWLLEIISEDVFNMIEGTNTTF----------------------------PKGFSTLDE
        +G+ HHL+E +   +E    E     D S   W   DGLL SWLL +++E+V  +++GT T +                             KG  +LDE
Subjt:  MGIEHHLTEEKKHDDEAANKEESSKDDPSHVVWITYDGLLISWLLEIISEDVFNMIEGTNTTF----------------------------PKGFSTLDE

Query:  HLKKIKHLCDKLAAMKKPHDDVIKVFRLARGLGSRYQGFRTTMLSKPANPSFNQSVVVVKAHDEMLSSELEEENFVQINHAQAFYDQKGRNRGRGRQFLF
        +L++ K +CD LAA++KP  D+ KVF+LA+GLG++Y  FR  MLSKP  PS+NQ V+ ++ H++M+ +E  EEN   INH QA++ Q+GR R +G +FL 
Subjt:  HLKKIKHLCDKLAAMKKPHDDVIKVFRLARGLGSRYQGFRTTMLSKPANPSFNQSVVVVKAHDEMLSSELEEENFVQINHAQAFYDQKGRNRGRGRQFLF

Query:  SWKRFSLKANFKEIQASSKHQN
          + F+    F     S + QN
Subjt:  SWKRFSLKANFKEIQASSKHQN

RVW43526.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]5.4e-3237.39Show/hide
Query:  MGIEHHLTEEKKHDDEAANKEESSKDDPSHVVWITYDGLLISWLLEIISEDVFNMIEGTNTTF----------------------------PKGFSTLDE
        +G+ HHL+E +    E    E     D S   W   DGLL SWLL +++E+V  +++GT T +                             KG  +LDE
Subjt:  MGIEHHLTEEKKHDDEAANKEESSKDDPSHVVWITYDGLLISWLLEIISEDVFNMIEGTNTTF----------------------------PKGFSTLDE

Query:  HLKKIKHLCDKLAAMKKPHDDVIKVFRLARGLGSRYQGFRTTMLSKPANPSFNQSVVVVKAHDEMLSSELEEENFVQINHAQAFYDQKGRNRGRGRQFLF
        +L++ K +CD LAA++KP  D+ KVF+LA+GLG++Y  FR  MLSKP  PS+NQ V+ ++ H++M+ +E  EEN   INH QA++ Q+GR R RG +FL 
Subjt:  HLKKIKHLCDKLAAMKKPHDDVIKVFRLARGLGSRYQGFRTTMLSKPANPSFNQSVVVVKAHDEMLSSELEEENFVQINHAQAFYDQKGRNRGRGRQFLF

Query:  SWKRFSLKANFKEIQASSKHQN
          + F+    F     S + QN
Subjt:  SWKRFSLKANFKEIQASSKHQN

RVX14187.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]4.1e-3236.94Show/hide
Query:  MGIEHHLTEEKKHDDEAANKEESSKDDPSHVVWITYDGLLISWLLEIISEDVFNMIEGTNTTF----------------------------PKGFSTLDE
        +G+ HHL+E +   +E    E     D S   W   DGLL SWLL +++E+V  +++G  T +                             KG  +LDE
Subjt:  MGIEHHLTEEKKHDDEAANKEESSKDDPSHVVWITYDGLLISWLLEIISEDVFNMIEGTNTTF----------------------------PKGFSTLDE

Query:  HLKKIKHLCDKLAAMKKPHDDVIKVFRLARGLGSRYQGFRTTMLSKPANPSFNQSVVVVKAHDEMLSSELEEENFVQINHAQAFYDQKGRNRGRGRQFLF
        +L++ K +CD LA ++KP  D+ KVF+LA+GLG++Y  FR  MLSKP  PS+NQ V+ ++ H++M+ +E  EEN   INH QA++ Q+GR R RG +FLF
Subjt:  HLKKIKHLCDKLAAMKKPHDDVIKVFRLARGLGSRYQGFRTTMLSKPANPSFNQSVVVVKAHDEMLSSELEEENFVQINHAQAFYDQKGRNRGRGRQFLF

Query:  SWKRFSLKANFKEIQASSKHQN
          + F+    F     S + QN
Subjt:  SWKRFSLKANFKEIQASSKHQN

XP_022154021.1 uncharacterized protein LOC111021379 [Momordica charantia]1.5e-3747.47Show/hide
Query:  MGIEHHLTEEKKHDDEAANKEESSKDDPSHVVWITYDGLLISWLLEIISEDVFNMIEGTNT----------------------------TFPKGFSTLDE
        +G+EHHL EE    DE   KE  S        WI  DGLL SWLL II+EDV  ++EGT T                            T  KG  ++DE
Subjt:  MGIEHHLTEEKKHDDEAANKEESSKDDPSHVVWITYDGLLISWLLEIISEDVFNMIEGTNT----------------------------TFPKGFSTLDE

Query:  HLKKIKHLCDKLAAMKKPHDDVIKVFRLARGLGSRYQGFRTTMLSKPANPSFNQSVVVVKAHDEMLSSELEEENFVQINHAQAFYDQKGRNRGRGRQF
        +++K K+LCD+L AMKKP DD+ KVF LARGLG +Y+ FRT MLSK   PS+NQ V+ +KAHD+ L+ E EEE   Q+N  QAF+  +GR+RGRGRQF
Subjt:  HLKKIKHLCDKLAAMKKPHDDVIKVFRLARGLGSRYQGFRTTMLSKPANPSFNQSVVVVKAHDEMLSSELEEENFVQINHAQAFYDQKGRNRGRGRQF

TrEMBL top hitse value%identityAlignment
A0A0A0K7S3 Uncharacterized protein2.0e-10497.96Show/hide
Query:  MGIEHHLTEEKKHDDEAANKEESSKDDPSHVVWITYDGLLISWLLEIISEDVFNMIEGTNTTFPKGFSTLDEHLKKIKHLCDKLAAMKKPHDDVIKVFRL
        MGIEHHLTEEKKHDDEAANKEESSKDDPSHVVWITYDGLLISWLLEII EDVFNMIEGTNTTF KGFSTLDEHLKKIKHLCDKLAAMKKPHDDVIKVFRL
Subjt:  MGIEHHLTEEKKHDDEAANKEESSKDDPSHVVWITYDGLLISWLLEIISEDVFNMIEGTNTTFPKGFSTLDEHLKKIKHLCDKLAAMKKPHDDVIKVFRL

Query:  ARGLGSRYQGFRTTMLSKPANPSFNQSVVVVKAHDEMLSSELEEENFVQINHAQAFYDQKGRNRGRGRQFLFSWKRFSLKANFKEIQASSKHQNQP
        ARGLGSRYQGFRTTMLSKPANPSFNQSVVVVKAHDEMLSSELEEENFVQINHAQAFY+QKGRNRGRGRQFLFSWKRFSLKANFKEIQ+SSKHQNQP
Subjt:  ARGLGSRYQGFRTTMLSKPANPSFNQSVVVVKAHDEMLSSELEEENFVQINHAQAFYDQKGRNRGRGRQFLFSWKRFSLKANFKEIQASSKHQNQP

A0A438C9J9 Retrovirus-related Pol polyprotein from transposon RE13.4e-3236.94Show/hide
Query:  MGIEHHLTEEKKHDDEAANKEESSKDDPSHVVWITYDGLLISWLLEIISEDVFNMIEGTNTTF----------------------------PKGFSTLDE
        +G+ HHL+E +   +E    E     D S   W   DGLL SWLL +++E+V  +++GT T +                             KG  +LDE
Subjt:  MGIEHHLTEEKKHDDEAANKEESSKDDPSHVVWITYDGLLISWLLEIISEDVFNMIEGTNTTF----------------------------PKGFSTLDE

Query:  HLKKIKHLCDKLAAMKKPHDDVIKVFRLARGLGSRYQGFRTTMLSKPANPSFNQSVVVVKAHDEMLSSELEEENFVQINHAQAFYDQKGRNRGRGRQFLF
        +L++ K +CD LAA++KP  D+ KVF+LA+GLG++Y  FR  MLSKP  PS+NQ V+ ++ H++M+ +E  EEN   INH QA++ Q+GR R +G +FL 
Subjt:  HLKKIKHLCDKLAAMKKPHDDVIKVFRLARGLGSRYQGFRTTMLSKPANPSFNQSVVVVKAHDEMLSSELEEENFVQINHAQAFYDQKGRNRGRGRQFLF

Query:  SWKRFSLKANFKEIQASSKHQN
          + F+    F     S + QN
Subjt:  SWKRFSLKANFKEIQASSKHQN

A0A438E6Z5 Retrovirus-related Pol polyprotein from transposon TNT 1-942.6e-3237.39Show/hide
Query:  MGIEHHLTEEKKHDDEAANKEESSKDDPSHVVWITYDGLLISWLLEIISEDVFNMIEGTNTTF----------------------------PKGFSTLDE
        +G+ HHL+E +    E    E     D S   W   DGLL SWLL +++E+V  +++GT T +                             KG  +LDE
Subjt:  MGIEHHLTEEKKHDDEAANKEESSKDDPSHVVWITYDGLLISWLLEIISEDVFNMIEGTNTTF----------------------------PKGFSTLDE

Query:  HLKKIKHLCDKLAAMKKPHDDVIKVFRLARGLGSRYQGFRTTMLSKPANPSFNQSVVVVKAHDEMLSSELEEENFVQINHAQAFYDQKGRNRGRGRQFLF
        +L++ K +CD LAA++KP  D+ KVF+LA+GLG++Y  FR  MLSKP  PS+NQ V+ ++ H++M+ +E  EEN   INH QA++ Q+GR R RG +FL 
Subjt:  HLKKIKHLCDKLAAMKKPHDDVIKVFRLARGLGSRYQGFRTTMLSKPANPSFNQSVVVVKAHDEMLSSELEEENFVQINHAQAFYDQKGRNRGRGRQFLF

Query:  SWKRFSLKANFKEIQASSKHQN
          + F+    F     S + QN
Subjt:  SWKRFSLKANFKEIQASSKHQN

A0A438JZ09 Retrovirus-related Pol polyprotein from transposon RE12.0e-3236.94Show/hide
Query:  MGIEHHLTEEKKHDDEAANKEESSKDDPSHVVWITYDGLLISWLLEIISEDVFNMIEGTNTTF----------------------------PKGFSTLDE
        +G+ HHL+E +   +E    E     D S   W   DGLL SWLL +++E+V  +++G  T +                             KG  +LDE
Subjt:  MGIEHHLTEEKKHDDEAANKEESSKDDPSHVVWITYDGLLISWLLEIISEDVFNMIEGTNTTF----------------------------PKGFSTLDE

Query:  HLKKIKHLCDKLAAMKKPHDDVIKVFRLARGLGSRYQGFRTTMLSKPANPSFNQSVVVVKAHDEMLSSELEEENFVQINHAQAFYDQKGRNRGRGRQFLF
        +L++ K +CD LA ++KP  D+ KVF+LA+GLG++Y  FR  MLSKP  PS+NQ V+ ++ H++M+ +E  EEN   INH QA++ Q+GR R RG +FLF
Subjt:  HLKKIKHLCDKLAAMKKPHDDVIKVFRLARGLGSRYQGFRTTMLSKPANPSFNQSVVVVKAHDEMLSSELEEENFVQINHAQAFYDQKGRNRGRGRQFLF

Query:  SWKRFSLKANFKEIQASSKHQN
          + F+    F     S + QN
Subjt:  SWKRFSLKANFKEIQASSKHQN

A0A6J1DMG5 uncharacterized protein LOC1110213797.1e-3847.47Show/hide
Query:  MGIEHHLTEEKKHDDEAANKEESSKDDPSHVVWITYDGLLISWLLEIISEDVFNMIEGTNT----------------------------TFPKGFSTLDE
        +G+EHHL EE    DE   KE  S        WI  DGLL SWLL II+EDV  ++EGT T                            T  KG  ++DE
Subjt:  MGIEHHLTEEKKHDDEAANKEESSKDDPSHVVWITYDGLLISWLLEIISEDVFNMIEGTNT----------------------------TFPKGFSTLDE

Query:  HLKKIKHLCDKLAAMKKPHDDVIKVFRLARGLGSRYQGFRTTMLSKPANPSFNQSVVVVKAHDEMLSSELEEENFVQINHAQAFYDQKGRNRGRGRQF
        +++K K+LCD+L AMKKP DD+ KVF LARGLG +Y+ FRT MLSK   PS+NQ V+ +KAHD+ L+ E EEE   Q+N  QAF+  +GR+RGRGRQF
Subjt:  HLKKIKHLCDKLAAMKKPHDDVIKVFRLARGLGSRYQGFRTTMLSKPANPSFNQSVVVVKAHDEMLSSELEEENFVQINHAQAFYDQKGRNRGRGRQF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTATTGAACACCATCTCACAGAAGAAAAGAAACATGATGATGAAGCTGCCAACAAGGAAGAAAGCTCCAAAGATGATCCTAGCCATGTAGTTTGGATCACATATGA
TGGACTTCTTATTTCTTGGCTATTGGAGATAATCTCAGAAGATGTTTTCAATATGATAGAAGGAACAAATACGACATTCCCGAAGGGATTCTCAACTCTTGATGAACATT
TAAAAAAAATTAAACATCTCTGTGATAAACTAGCTGCCATGAAGAAACCACATGATGATGTTATTAAAGTGTTTCGTCTTGCTAGAGGCTTAGGATCTCGATACCAAGGT
TTTCGAACAACAATGTTATCAAAACCAGCAAATCCCTCTTTCAACCAATCTGTTGTGGTTGTTAAAGCACATGATGAAATGTTGTCTAGTGAACTTGAAGAAGAAAATTT
TGTGCAAATCAATCATGCTCAAGCTTTTTACGACCAAAAAGGTCGTAATAGAGGACGTGGGAGACAATTCCTCTTCTCGTGGAAGAGGTTTTCCTTAAAAGCAAATTTCA
AGGAAATACAAGCTTCTAGCAAGCATCAAAATCAACCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTATTGAACACCATCTCACAGAAGAAAAGAAACATGATGATGAAGCTGCCAACAAGGAAGAAAGCTCCAAAGATGATCCTAGCCATGTAGTTTGGATCACATATGA
TGGACTTCTTATTTCTTGGCTATTGGAGATAATCTCAGAAGATGTTTTCAATATGATAGAAGGAACAAATACGACATTCCCGAAGGGATTCTCAACTCTTGATGAACATT
TAAAAAAAATTAAACATCTCTGTGATAAACTAGCTGCCATGAAGAAACCACATGATGATGTTATTAAAGTGTTTCGTCTTGCTAGAGGCTTAGGATCTCGATACCAAGGT
TTTCGAACAACAATGTTATCAAAACCAGCAAATCCCTCTTTCAACCAATCTGTTGTGGTTGTTAAAGCACATGATGAAATGTTGTCTAGTGAACTTGAAGAAGAAAATTT
TGTGCAAATCAATCATGCTCAAGCTTTTTACGACCAAAAAGGTCGTAATAGAGGACGTGGGAGACAATTCCTCTTCTCGTGGAAGAGGTTTTCCTTAAAAGCAAATTTCA
AGGAAATACAAGCTTCTAGCAAGCATCAAAATCAACCTTGA
Protein sequenceShow/hide protein sequence
MGIEHHLTEEKKHDDEAANKEESSKDDPSHVVWITYDGLLISWLLEIISEDVFNMIEGTNTTFPKGFSTLDEHLKKIKHLCDKLAAMKKPHDDVIKVFRLARGLGSRYQG
FRTTMLSKPANPSFNQSVVVVKAHDEMLSSELEEENFVQINHAQAFYDQKGRNRGRGRQFLFSWKRFSLKANFKEIQASSKHQNQP