CuGenDBv2

Gene ID	CSPI06G01880
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	RRM domain-containing protein
Genome location	Chr6:1404742..1407302
RNA-Seq Expression	CSPI06G01880
Synteny	CSPI06G01880
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6592987.1 hypothetical protein SDJN03_12463, partial [Cucurbita argyrosperma subsp. sororia]

1.0e-86

82.91

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Query:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        MGS  DEQ+A FEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPN+TEPINSSQCALVEMKDSKEA SVI+VIAQFPFMMSGMPRPVRA PAE
Subjt:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD
        VEMFDDRP+KPGRKISF WL  DDPDFEVA+++K L+++HVAEAAFL+KQ + EEEKLAKQQQ+ LK NYKKYEIV+ VM DGTARRLA+ YNMR++DD
Subjt:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD

KAG7025396.1 hypothetical protein SDJN02_11891, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.0e-86

82.91

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Query:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        MGS  DEQ+A FEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPN+TEPINSSQCALVEMKDSKEA SVI+VIAQFPFMMSGMPRPVRA PAE
Subjt:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD
        VEMFDDRP+KPGRKISF WL  DDPDFEVA+++K L+++HVAEAAFL+KQ + EEEKLAKQQQ+ LK NYKKYEIV+ VM DGTARRLA+ YNMR++DD
Subjt:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD

XP_004138411.1 uncharacterized protein LOC101221287 [Cucumis sativus]

1.1e-104

100

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Query:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD
        VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD
Subjt:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD

XP_008441485.1 PREDICTED: uncharacterized protein LOC103485592 [Cucumis melo]

4.0e-99

93.97

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Query:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        MGS KDEQF+MFEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVV+VHFIPNYTEPINSSQCALVEMKDSKEAKSVI VIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD
         EMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRL+KKHVAEAAFL+KQH+AEEEKLAKQQQETL+GNYKKYEIVDSVMADGTARRLAK+YNMR+SDD
Subjt:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD

XP_038886330.1 uncharacterized protein LOC120076542 [Benincasa hispida]

8.6e-94

89.45

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Query:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        MGS KDEQFAMFEEKVKRTVYVDNLS  VTEPVLRTALDQFGTVVSVHFIPNYTEPIN+SQCALVEMKD KEAKSVI+VIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD
        VEMFDDRPVKPGRKISF WLE DDPDFEVA+++K L++KHVAEAAFL+K H+AEEEKLAKQQQE LKGNYKKYEIV+SVMADGTARRLAK YNMR+SDD
Subjt:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAE7 RRM domain-containing protein

5.2e-105

100

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Query:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD
        VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD
Subjt:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD

A0A1S3B3J3 uncharacterized protein LOC103485592

1.9e-99

93.97

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Query:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        MGS KDEQF+MFEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVV+VHFIPNYTEPINSSQCALVEMKDSKEAKSVI VIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD
         EMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRL+KKHVAEAAFL+KQH+AEEEKLAKQQQETL+GNYKKYEIVDSVMADGTARRLAK+YNMR+SDD
Subjt:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD

A0A6J1DB90 uncharacterized protein LOC111018537

9.6e-83

78.89

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Query:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        MGS  +EQFA FEEKVKRTVYVDNLS QVTEPV+RTALDQFGTVV V FIPNY EP+NSSQCALVEMKD KEAKSVI+VIA+FPFM+SGMPRPVRARPAE
Subjt:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD
        VEMFDDRP+KPG KISF WL+ +DPDF+VA+++K  ++KH AE AFL+KQ + EEEKLAKQQQE LKGNYKK+EIV+SVM DGTARRLAK Y+MR+ DD
Subjt:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD

A0A6J1H6P8 uncharacterized protein LOC111460615

3.2e-86

81.91

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Query:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        MGS  DEQ+  FEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPN+TEPINSSQCALVEMKDSKEA SVI++IAQFPFMMSGMPRPVRA PAE
Subjt:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD
        VEMFDDRP+KPGRKISF WL  DDPDFEVA+++K L+++HVAEAAFL+KQ + EEEKLAKQQQ+ LK NYKKYEIV+ VM DGTARRLA+ YNMR++DD
Subjt:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD

A0A6J1KVQ1 uncharacterized protein LOC111498019

1.4e-86

81.91

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Query:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        MGS  DEQ+A FEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPN+TEPINSSQCALVEMKDSKEA SVI+VI+QFPFMMSGMPRPVRA PAE
Subjt:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD
        VEMFDDRP+KPGRKISF WL  +DPDFEVA+++K L+++HVAEAAFL+KQ + EEEKLAKQQQ+ LKGNYKKYEI++ VM DGTARRLA+ YNMR++DD
Subjt:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G05970.1 RNA-binding (RRM/RBD/RNP motifs) family protein

2.9e-47

47.18

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Query:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        M + ++  +  F E+V+RTVYVD L+   T PV+ +A +QFGTV  V FIPNY  P       LVEM++ +  ++VI+ ++Q PFM++GMPRPVRA  AE
Subjt:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMR
          MF D+P KPGR + FRW++ +DPDF+ AR++KRL++KH AE +F++K  + E EKL+KQQ ET   ++KK+E++D ++ DG A++LA  Y+++
Subjt:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMR

AT1G05970.2 RNA-binding (RRM/RBD/RNP motifs) family protein

8.9e-49

47.18

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Query:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        M + ++  +  F E+V+RTVYVD L+   T PV+ +A +QFGTV  V FIPNY  P       LVEM++ +  ++VI+ ++Q PFM++GMPRPVRA  AE
Subjt:  MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMR
          MF D+P KPGR + FRW++ +DPDF+ AR++KRL++KH AE +F++K+ + E EKL+KQQ ET   ++KK+E++D ++ DG A++LA  Y+++
Subjt:  VEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMR

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGATCGGAGAAGGATGAGCAATTTGCCATGTTTGAAGAGAAGGTTAAACGGACTGTGTATGTTGATAATCTCTCTCTTCAAGTAACTGAGCCTGTTTTGAGAACTGC
TTTAGATCAGTTTGGGACTGTGGTCAGTGTCCATTTTATTCCAAATTACACGGAGCCAATTAACAGCTCTCAATGTGCTCTAGTGGAAATGAAGGATTCGAAGGAGGCGA
AATCTGTAATCACCGTTATAGCTCAATTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCTCGCCCTGCCGAAGTAGAAATGTTTGATGATCGCCCTGTAAAG
CCTGGTAGAAAGATTAGCTTTAGATGGCTGGAAAGTGATGATCCTGATTTTGAAGTGGCCAGACAAATCAAGCGTCTTTCTAAGAAACATGTGGCTGAAGCTGCATTTTT
GGTCAAGCAACATATGGCGGAAGAGGAAAAGCTTGCAAAGCAGCAACAAGAAACACTGAAAGGAAACTACAAGAAATATGAGATTGTAGATAGTGTAATGGCCGATGGAA
CTGCCCGCAGGTTAGCAAAACATTATAATATGCGAATTTCAGATGATTAA

mRNA sequence

Show/hide mRNA sequence

TCCTCGTCTAATTCGTTTATTATCAGATGACTGCCATTCCACTTTTTTAATCTGTACCCGCAACGCACCGATTCAAATCCTCTTCCGGGCCTCTCTCCTCTTTTCTATAG
CCCATTTCAACTATTAAGGCCCAAAAGCCCATTAGAAGTTACAAACAAAACCCTAATCCTAATTAGCGTTCCCTTTTCCGCGATTTCTCTCTCACGTTCCCCAATTCTGC
TCTCCCTTCACCGCCAATTTCAAAGTTTCCGACGCCGATCACCCCTTTCTCCGCCGCCCTCAAAGTTGTTCGATCCCCCTCCGTAAGTGGAGATGCGCATAAGCTAGGCC
AGACACTCGCGATACCAAAATGATCTGAAAGCTCGTTTGTTCTTCATGATCTCTTATTAGAGATGGGATCGGAGAAGGATGAGCAATTTGCCATGTTTGAAGAGAAGGTT
AAACGGACTGTGTATGTTGATAATCTCTCTCTTCAAGTAACTGAGCCTGTTTTGAGAACTGCTTTAGATCAGTTTGGGACTGTGGTCAGTGTCCATTTTATTCCAAATTA
CACGGAGCCAATTAACAGCTCTCAATGTGCTCTAGTGGAAATGAAGGATTCGAAGGAGGCGAAATCTGTAATCACCGTTATAGCTCAATTCCCTTTCATGATGTCTGGAA
TGCCGAGACCGGTGAGGGCTCGCCCTGCCGAAGTAGAAATGTTTGATGATCGCCCTGTAAAGCCTGGTAGAAAGATTAGCTTTAGATGGCTGGAAAGTGATGATCCTGAT
TTTGAAGTGGCCAGACAAATCAAGCGTCTTTCTAAGAAACATGTGGCTGAAGCTGCATTTTTGGTCAAGCAACATATGGCGGAAGAGGAAAAGCTTGCAAAGCAGCAACA
AGAAACACTGAAAGGAAACTACAAGAAATATGAGATTGTAGATAGTGTAATGGCCGATGGAACTGCCCGCAGGTTAGCAAAACATTATAATATGCGAATTTCAGATGATT
AATTAAAGCCTCTGAAGCTTTGCTTTTGTAACCTCTTAATGCCACTGATTTTTACATGTAAATTTGTACAAATTGTCGTTTATATGTATGAATAGAGATGAATTACAGAC
TTTTGTGATTTAGAGGGAGAAAAATAGATACTTGGTATAATACTCCTAACAACAAG

Protein sequence

Show/hide protein sequence

MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVK
PGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD

CSPI06G01880 (gene) of Cucumber (PI 183967) v1 genome