CuGenDBv2

Gene ID	CSPI06G02110
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	40S ribosomal protein S26
Genome location	Chr6:1560831..1562885
RNA-Seq Expression	CSPI06G02110
Synteny	CSPI06G02110
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000892 - Ribosomal protein S26e IPR038551 - Ribosomal protein S26e superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004138397.1 40S ribosomal protein S26-3 [Cucumis sativus]

4.4e-67

100

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQAGQNPRVGAGGAPPRA
        FIRRRDDAPKPGQAGQNPRVGAGGAPPRA
Subjt:  FIRRRDDAPKPGQAGQNPRVGAGGAPPRA

XP_008456772.1 PREDICTED: 40S ribosomal protein S26-3-like [Cucumis melo]

6.4e-66

98.45

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR REPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQAGQNPRVGAGGAPPRA
        FIRRRDDAPKPGQ GQNPRVGAGGAPPRA
Subjt:  FIRRRDDAPKPGQAGQNPRVGAGGAPPRA

XP_022134511.1 40S ribosomal protein S26-1-like [Momordica charantia]

1.1e-62

96.83

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKR+PPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQAGQNPRVGAGGAP
        FIRRRDDAPKPGQ GQ PRVGAG AP
Subjt:  FIRRRDDAPKPGQAGQNPRVGAGGAP

XP_022939944.1 40S ribosomal protein S26-3-like [Cucurbita moschata]

2.3e-63

96.15

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKR+PPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQAGQNPRVGAG-GAPPRA
        FIRRR+DAPKPGQ GQ PRVGAG GAPPRA
Subjt:  FIRRRDDAPKPGQAGQNPRVGAG-GAPPRA

XP_038884330.1 40S ribosomal protein S26-3-like [Benincasa hispida]

5.4e-65

97.67

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR REPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQAGQNPRVGAGGAPPRA
        FIRRRDDAPKPGQ GQ PRVGAGGAPPRA
Subjt:  FIRRRDDAPKPGQAGQNPRVGAGGAPPRA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KDG9 40S ribosomal protein S26

2.2e-67

100

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQAGQNPRVGAGGAPPRA
        FIRRRDDAPKPGQAGQNPRVGAGGAPPRA
Subjt:  FIRRRDDAPKPGQAGQNPRVGAGGAPPRA

A0A1S3C4P8 40S ribosomal protein S26

3.1e-66

98.45

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR REPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQAGQNPRVGAGGAPPRA
        FIRRRDDAPKPGQ GQNPRVGAGGAPPRA
Subjt:  FIRRRDDAPKPGQAGQNPRVGAGGAPPRA

A0A5A7UA01 40S ribosomal protein S26

3.1e-66

98.45

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR REPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQAGQNPRVGAGGAPPRA
        FIRRRDDAPKPGQ GQNPRVGAGGAPPRA
Subjt:  FIRRRDDAPKPGQAGQNPRVGAGGAPPRA

A0A6J1FIL8 40S ribosomal protein S26

1.1e-63

96.15

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKR+PPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQAGQNPRVGAG-GAPPRA
        FIRRR+DAPKPGQ GQ PRVGAG GAPPRA
Subjt:  FIRRRDDAPKPGQAGQNPRVGAG-GAPPRA

A0A6J1K0V7 40S ribosomal protein S26

1.1e-63

96.15

Show/hide

Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKR+PPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQAGQNPRVGAG-GAPPRA
        FIRRR+DAPKPGQ GQ PRVGAG GAPPRA
Subjt:  FIRRRDDAPKPGQAGQNPRVGAG-GAPPRA

SwissProt top hits

e value

%identity

Alignment

O45499 40S ribosomal protein S26

1.3e-37

66.95

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRN GRNK  RGHV FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ +A  Y QY LPKLY K+ YC++CAIHS VVR RSR  RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQAGQNP
        F  +R  A +PG  G  P
Subjt:  FIRRRDDAPKPGQAGQNP

P49206 40S ribosomal protein S26-1

8.5e-53

81.6

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQAGQNPRVGAGGA
        F RR++D PKPGQ GQ PR    GA
Subjt:  FIRRRDDAPKPGQAGQNPRVGAGGA

P49216 40S ribosomal protein S26

8.2e-48

73.81

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRNGGRNKHGRGHVK+IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+D Y LPKLYAK+ +CVSCAIH+H+VRVRSR +RR R PP+R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQAGQNPRVGAGGAP
        F RR D    P   G  P  G   AP
Subjt:  FIRRRDDAPKPGQAGQNPRVGAGGAP

Q8LPJ7 40S ribosomal protein S26-2

1.4e-52

79.84

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQAGQNPRVGAGGAPPRA
        F RR++D PKPGQ GQ PR    GA   A
Subjt:  FIRRRDDAPKPGQAGQNPRVGAGGAPPRA

Q9LYK9 40S ribosomal protein S26-3

2.2e-53

82.44

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQAGQNPRVGAGGAP--PRA
        F RR++D PKP Q GQ PR  AGGAP  PRA
Subjt:  FIRRRDDAPKPGQAGQNPRVGAGGAP--PRA

Arabidopsis top hits

e value

%identity

Alignment

AT2G40510.1 Ribosomal protein S26e family protein

1.0e-53

79.84

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQAGQNPRVGAGGAPPRA
        F RR++D PKPGQ GQ PR    GA   A
Subjt:  FIRRRDDAPKPGQAGQNPRVGAGGAPPRA

AT2G40590.1 Ribosomal protein S26e family protein

6.0e-54

81.6

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQAGQNPRVGAGGA
        F RR++D PKPGQ GQ PR    GA
Subjt:  FIRRRDDAPKPGQAGQNPRVGAGGA

AT3G56340.1 Ribosomal protein S26e family protein

1.6e-54

82.44

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQAGQNPRVGAGGAP--PRA
        F RR++D PKP Q GQ PR  AGGAP  PRA
Subjt:  FIRRRDDAPKPGQAGQNPRVGAGGAP--PRA

Sequences

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CDS sequence

Show/hide CDS sequence

ATGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGTGGCCACGTGAAATTCATCCGCTGTTCCAACTGCGGCAAATGCTGCCCTAAGGATAAGGCAATCAA
GAGGTTCCTTGTCAGGAACATTGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCCTGTGTTTATGATCAATACACTCTTCCTAAGCTTTATGCCAAGATGCAGTACT
GTGTTTCTTGTGCTATTCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAACGTGAGCCCCCACAGCGCTTCATTAGACGCAGGGACGATGCACCAAAG
CCTGGACAGGCAGGACAGAACCCTCGTGTTGGAGCTGGTGGAGCTCCACCCCGTGCTTGA

mRNA sequence

Show/hide mRNA sequence

TCACCTTCTGTTTCCCCTTCATATAAAAGGATCACTACCACTCATTCATAAACCCTAATTCAGCCGACGAGCTCTCCGATTCTCTCCGATTCGCTCGTCCATCTCATACA
CTACAACCATGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGTGGCCACGTGAAATTCATCCGCTGTTCCAACTGCGGCAAATGCTGCCCTAAGGATAAG
GCAATCAAGAGGTTCCTTGTCAGGAACATTGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCCTGTGTTTATGATCAATACACTCTTCCTAAGCTTTATGCCAAGAT
GCAGTACTGTGTTTCTTGTGCTATTCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAACGTGAGCCCCCACAGCGCTTCATTAGACGCAGGGACGATG
CACCAAAGCCTGGACAGGCAGGACAGAACCCTCGTGTTGGAGCTGGTGGAGCTCCACCCCGTGCTTGAAAGAACGCTTTATATGCTATTTAATTTTCTCGTGGTTTCTCA
GATTTTGTGGACTTCAATTTTATTTAGGATTCTTCACTATATTTTGAGGGCTTTGTTTTGAGTATCGAATTATGCTGTACTTGTGAAATCTGATCAATTTTTGATTTAAT
AGGTTCTCTACTTGAACATTTTATTGTTTTTTGTCATGAGATCTGTTCTATCGATCTTGTTTCATTTAATCTCCTTTACTTTTTAGTCAACAATTCAGGCCATTCTGAAG
AGTTTGTTAGTTCTATTATTAGAAAGTAGAGGAAAAAACACGGTTGTCCTAGTAATGTACAATGTTTGTGGTGGTAGCTTTACTTTAAATATTCGCCCTAATTTTAAGCA
AATGCAGCTGGCCATGTTGGGATTCTCGTGAGATGTTCTTGCGATTTGTAACTTTGTTCTTCTTCTTTTCGTAATAGTGCCGAAGGTTAGAAATATGAAGTGTTTTCGGG
AGGAGCTTTACACTAATTATCAACGATAATAAGAGATTAATTGACAACAATTCCCCCATG

Protein sequence

Show/hide protein sequence

MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPK
PGQAGQNPRVGAGGAPPRA

CSPI06G02110 (gene) of Cucumber (PI 183967) v1 genome