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CSPI06G02750 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G02750
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationChr6:2190061..2190806
RNA-Seq ExpressionCSPI06G02750
SyntenyCSPI06G02750
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045262.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.9e-7993.21Show/hide
Query:  MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTSFSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQI
        MFLVKL NFDPLLDATSF AQISFD+AD+KFTPSKFFII+SHRSPRFIATLQLSPQWFT+FSVD+DHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQ+
Subjt:  MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTSFSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQI

Query:  ILRFDTPSSEIQPLHHELALSPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS
        ILRFDTPSSEIQPLHHEL LSPPQAEDNQIGQHELDE KYFIVKSKALRRIIK+LPIFQNDS
Subjt:  ILRFDTPSSEIQPLHHELALSPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS

TYK02994.1 uncharacterized protein E5676_scaffold46G00830 [Cucumis melo var. makuwa]4.2e-6274.07Show/hide
Query:  MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTSFSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQI
        MFLVKLT F+PLLD+TS+ AQ S D+AD+KF P K F+I  +RSPRF ATLQLSP+WF+++SVDH HSSKVSLESFHDA+LDGG F+SM+IHLLDKTNQ+
Subjt:  MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTSFSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQI

Query:  ILRFDTPSSEIQPLHHELALSPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS
         LRFDTPSS+IQP HHEL LSPPQ+ED QI +HELD  K+ IVKSK+LRR+IKELPIF NDS
Subjt:  ILRFDTPSSEIQPLHHELALSPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS

XP_008464344.1 PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo]4.9e-7993.21Show/hide
Query:  MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTSFSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQI
        MFLVKL NFDPLLDATSF AQISFD+AD+KFTPSKFFII+SHRSPRFIATLQLSPQWFT+FSVD+DHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQ+
Subjt:  MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTSFSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQI

Query:  ILRFDTPSSEIQPLHHELALSPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS
        ILRFDTPSSEIQPLHHEL LSPPQAEDNQIGQHELDE KYFIVKSKALRRIIK+LPIFQNDS
Subjt:  ILRFDTPSSEIQPLHHELALSPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS

XP_031743957.1 uncharacterized protein LOC116404737 [Cucumis sativus]4.2e-6275.31Show/hide
Query:  MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTSFSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQI
        MFLVKLT F+PLLD+T F A  S ++A VKFTP K F+I S+R P FIATLQLSP+WFT+FSVDH HSSKVSLESFHDA+LDGG F++M+IHLLDKTNQ+
Subjt:  MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTSFSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQI

Query:  ILRFDTPSSEIQPLHHELALSPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS
        ILRFDTPSS+IQPLH EL LSPPQ+ED++IGQHEL+  K+FIV SK+LRR+IKELPIFQNDS
Subjt:  ILRFDTPSSEIQPLHHELALSPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS

XP_031743987.1 uncharacterized protein LOC116404759 [Cucumis sativus]6.0e-85100Show/hide
Query:  MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTSFSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQI
        MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTSFSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQI
Subjt:  MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTSFSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQI

Query:  ILRFDTPSSEIQPLHHELALSPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS
        ILRFDTPSSEIQPLHHELALSPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS
Subjt:  ILRFDTPSSEIQPLHHELALSPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS

TrEMBL top hitse value%identityAlignment
A0A0A0K902 Uncharacterized protein2.0e-86100Show/hide
Query:  MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTSFSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQI
        MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTSFSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQI
Subjt:  MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTSFSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQI

Query:  ILRFDTPSSEIQPLHHELALSPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDSSN
        ILRFDTPSSEIQPLHHELALSPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDSSN
Subjt:  ILRFDTPSSEIQPLHHELALSPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDSSN

A0A1S3C8J1 uncharacterized protein LOC1034980105.2e-5065.43Show/hide
Query:  MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTSFSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQI
        MFLV+L  F+PL+DATS  AQ++  DADVKFTP    II S+RSP+F+ATLQLS + FT+FSVDH+ SSKVSL+ FHDA+LDGGSF+SMTIHLLD TNQ+
Subjt:  MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTSFSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQI

Query:  ILRFDTPSSEIQPLHHELALSPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS
        +LRF+TPS ++ PLHHELALSPPQAE+  +GQ  ++ G +F V S+ LRRIIKELP+F  D+
Subjt:  ILRFDTPSSEIQPLHHELALSPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS

A0A1S3CL88 uncharacterized protein LOC1035022502.4e-7993.21Show/hide
Query:  MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTSFSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQI
        MFLVKL NFDPLLDATSF AQISFD+AD+KFTPSKFFII+SHRSPRFIATLQLSPQWFT+FSVD+DHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQ+
Subjt:  MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTSFSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQI

Query:  ILRFDTPSSEIQPLHHELALSPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS
        ILRFDTPSSEIQPLHHEL LSPPQAEDNQIGQHELDE KYFIVKSKALRRIIK+LPIFQNDS
Subjt:  ILRFDTPSSEIQPLHHELALSPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS

A0A5D3BV00 Uncharacterized protein2.0e-6274.07Show/hide
Query:  MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTSFSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQI
        MFLVKLT F+PLLD+TS+ AQ S D+AD+KF P K F+I  +RSPRF ATLQLSP+WF+++SVDH HSSKVSLESFHDA+LDGG F+SM+IHLLDKTNQ+
Subjt:  MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTSFSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQI

Query:  ILRFDTPSSEIQPLHHELALSPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS
         LRFDTPSS+IQP HHEL LSPPQ+ED QI +HELD  K+ IVKSK+LRR+IKELPIF NDS
Subjt:  ILRFDTPSSEIQPLHHELALSPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS

A0A5D3DZ07 LINE-1 retrotransposable element ORF2 protein2.4e-7993.21Show/hide
Query:  MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTSFSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQI
        MFLVKL NFDPLLDATSF AQISFD+AD+KFTPSKFFII+SHRSPRFIATLQLSPQWFT+FSVD+DHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQ+
Subjt:  MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTSFSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQI

Query:  ILRFDTPSSEIQPLHHELALSPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS
        ILRFDTPSSEIQPLHHEL LSPPQAEDNQIGQHELDE KYFIVKSKALRRIIK+LPIFQNDS
Subjt:  ILRFDTPSSEIQPLHHELALSPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTTGGTCAAGCTTACAAACTTTGATCCTCTTCTTGACGCAACCTCCTTTTTTGCTCAAATTTCCTTCGACGATGCTGATGTGAAATTCACGCCTTCGAAATTCTT
CATAATTTCCTCGCACCGTTCCCCTCGCTTCATCGCAACGCTACAATTGTCGCCACAATGGTTCACTAGTTTTTCCGTTGATCATGATCATAGTTCTAAGGTTTCCCTTG
AATCCTTCCATGATGCTATATTGGATGGTGGAAGTTTTGCTTCAATGACAATCCATCTTTTGGACAAAACAAACCAAATAATCCTTAGATTTGATACTCCTTCAAGCGAA
ATCCAACCTTTGCATCATGAATTGGCATTGTCACCTCCCCAAGCAGAAGACAATCAAATTGGCCAACATGAACTTGACGAAGGAAAATATTTCATAGTTAAATCTAAGGC
ATTAAGACGAATTATTAAAGAGTTACCTATCTTCCAAAATGATTCAAGTAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCTTGGTCAAGCTTACAAACTTTGATCCTCTTCTTGACGCAACCTCCTTTTTTGCTCAAATTTCCTTCGACGATGCTGATGTGAAATTCACGCCTTCGAAATTCTT
CATAATTTCCTCGCACCGTTCCCCTCGCTTCATCGCAACGCTACAATTGTCGCCACAATGGTTCACTAGTTTTTCCGTTGATCATGATCATAGTTCTAAGGTTTCCCTTG
AATCCTTCCATGATGCTATATTGGATGGTGGAAGTTTTGCTTCAATGACAATCCATCTTTTGGACAAAACAAACCAAATAATCCTTAGATTTGATACTCCTTCAAGCGAA
ATCCAACCTTTGCATCATGAATTGGCATTGTCACCTCCCCAAGCAGAAGACAATCAAATTGGCCAACATGAACTTGACGAAGGAAAATATTTCATAGTTAAATCTAAGGC
ATTAAGACGAATTATTAAAGAGTTACCTATCTTCCAAAATGATTCAAGTAATTGA
Protein sequenceShow/hide protein sequence
MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTSFSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSE
IQPLHHELALSPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDSSN