; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI06G02770 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G02770
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptiontranscription factor IBH1
Genome locationChr6:2206470..2207725
RNA-Seq ExpressionCSPI06G02770
SyntenyCSPI06G02770
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044549 - Transcription factor IBH1-like, bHLH domain
IPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646599.1 hypothetical protein Csa_005327 [Cucumis sativus]4.5e-4298.95Show/hide
Query:  MAAYSSMARVAGRRRAWARALLFRLHTRRRHKTLMRRKRRPSTSSDDMVGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLSK
        MAAYSSMARVAGRRRAWARALLFRLHTR RHKTLMRRKRRPSTSSDDMVGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLSK
Subjt:  MAAYSSMARVAGRRRAWARALLFRLHTRRRHKTLMRRKRRPSTSSDDMVGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLSK

KAG6575326.1 Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. sororia]3.7e-3667.12Show/hide
Query:  SKSAITLLNSTSSRLCFARTFLRLFSRIKSQRSATFASAPPYQLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRRRHKTLMRRKRRPSTSSDDM
        SKS  T + STSS L  ARTFLR F+ IKSQ  A   S P  +L+R+SRRIKM AYSSMAR AG R AWARALLF+L TR RH+TL+ R RR    SDD 
Subjt:  SKSAITLLNSTSSRLCFARTFLRLFSRIKSQRSATFASAPPYQLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRRRHKTLMRRKRRPSTSSDDM

Query:  VGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLS
        VGKLRRL+PGGE+MDVCTLLEET  YI CLS QVKVMKAI +H  S
Subjt:  VGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLS

KAG7025295.1 Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-4170.95Show/hide
Query:  SKSAITLLNSTSSRLCFARTFLRLFSRIKSQRSATFASAPPYQLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRRRHKTLMRRKR--RPSTSSD
        S+S  T +NS+SS L  ARTFLR FSRIKS+R  T AS   ++L+R+SRRIK+AAYSSMARVAG +RAWARALLF+L+TR RH TLMRR+R   PS   D
Subjt:  SKSAITLLNSTSSRLCFARTFLRLFSRIKSQRSATFASAPPYQLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRRRHKTLMRRKR--RPSTSSD

Query:  DMVGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLS
        D VGKLRRLLPGG+ MDVCTLLEETA+YIHCLS QVKVM AI+ HHLS
Subjt:  DMVGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLS

XP_008464343.1 PREDICTED: transcription factor IBH1 [Cucumis melo]4.3e-6188.82Show/hide
Query:  MANSKSAITLLNSTSSRLCFARTFLRLFSRIKSQRSATFASAPPYQLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRRRHKTLMRRKRRPSTSS
        M NSKSAITLLNSTSSR  FARTFLRLFSRIKSQRSATFASAPP QLKRQS+RIKM AYSSMARVAG RRAWARALLF+L TR RH+TLMRRKRRPSTS 
Subjt:  MANSKSAITLLNSTSSRLCFARTFLRLFSRIKSQRSATFASAPPYQLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRRRHKTLMRRKRRPSTSS

Query:  DDMVGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLSKVN
        DD VGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAIS+ HLS  N
Subjt:  DDMVGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLSKVN

XP_023005092.1 transcription factor IBH1 [Cucurbita maxima]1.1e-4068.92Show/hide
Query:  KSAITLLNSTSSRLCFARTFLRLFSRIKSQRSATFASAPPYQLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRRRHKTLMRRK--RRPSTSSDD
        +S IT +NS+SS L  ARTFLR FSRIKS+R  T AS   ++L+R+SRRIK+AAYSSMARVAG +R WARALLF+L+TR RH+T MRR+    PS   DD
Subjt:  KSAITLLNSTSSRLCFARTFLRLFSRIKSQRSATFASAPPYQLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRRRHKTLMRRK--RRPSTSSDD

Query:  MVGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLSK
         VGKLRRL+PGG+ MDVCTLLEETA+YIHCLS QVKVM AI+ HHLSK
Subjt:  MVGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLSK

TrEMBL top hitse value%identityAlignment
A0A0A0KDQ3 Uncharacterized protein1.9e-6290.79Show/hide
Query:  MANSKSAITLLNSTSSRLCFARTFLRLFSRIKSQRSATFASAPPYQLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRRRHKTLMRRKRRPSTSS
        MANSKSAITLLNSTSSRLCFART            SATFASAPP QLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTR RHKTLMRRKRRPSTSS
Subjt:  MANSKSAITLLNSTSSRLCFARTFLRLFSRIKSQRSATFASAPPYQLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRRRHKTLMRRKRRPSTSS

Query:  DDMVGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLSKVN
        DDMVGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLSKVN
Subjt:  DDMVGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLSKVN

A0A1S3CLD3 transcription factor IBH12.1e-6188.82Show/hide
Query:  MANSKSAITLLNSTSSRLCFARTFLRLFSRIKSQRSATFASAPPYQLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRRRHKTLMRRKRRPSTSS
        M NSKSAITLLNSTSSR  FARTFLRLFSRIKSQRSATFASAPP QLKRQS+RIKM AYSSMARVAG RRAWARALLF+L TR RH+TLMRRKRRPSTS 
Subjt:  MANSKSAITLLNSTSSRLCFARTFLRLFSRIKSQRSATFASAPPYQLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRRRHKTLMRRKRRPSTSS

Query:  DDMVGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLSKVN
        DD VGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAIS+ HLS  N
Subjt:  DDMVGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLSKVN

A0A5D3BPL2 Transcription factor IBH12.1e-6188.82Show/hide
Query:  MANSKSAITLLNSTSSRLCFARTFLRLFSRIKSQRSATFASAPPYQLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRRRHKTLMRRKRRPSTSS
        M NSKSAITLLNSTSSR  FARTFLRLFSRIKSQRSATFASAPP QLKRQS+RIKM AYSSMARVAG RRAWARALLF+L TR RH+TLMRRKRRPSTS 
Subjt:  MANSKSAITLLNSTSSRLCFARTFLRLFSRIKSQRSATFASAPPYQLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRRRHKTLMRRKRRPSTSS

Query:  DDMVGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLSKVN
        DD VGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAIS+ HLS  N
Subjt:  DDMVGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLSKVN

A0A6J1KS83 transcription factor IBH15.3e-4168.92Show/hide
Query:  KSAITLLNSTSSRLCFARTFLRLFSRIKSQRSATFASAPPYQLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRRRHKTLMRRK--RRPSTSSDD
        +S IT +NS+SS L  ARTFLR FSRIKS+R  T AS   ++L+R+SRRIK+AAYSSMARVAG +R WARALLF+L+TR RH+T MRR+    PS   DD
Subjt:  KSAITLLNSTSSRLCFARTFLRLFSRIKSQRSATFASAPPYQLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRRRHKTLMRRK--RRPSTSSDD

Query:  MVGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLSK
         VGKLRRL+PGG+ MDVCTLLEETA+YIHCLS QVKVM AI+ HHLSK
Subjt:  MVGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLSK

A0A7N2RCD6 Uncharacterized protein8.5e-2347.62Show/hide
Query:  LNSTSSRLCFARTFLRLFSRIKSQRSATFASAPPYQLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRRRHKTLMRRK-------RRPSTSSDDM
        LN+ S ++ FAR F+R  + +K +++A  +S+   +++++S+RIK+AAYSSMA   G RRAW+RA+LF+L  R RH  +MRR+       +         
Subjt:  LNSTSSRLCFARTFLRLFSRIKSQRSATFASAPPYQLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRRRHKTLMRRK-------RRPSTSSDDM

Query:  VGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLSK
          KLR+L+PGG+ MD+C+LLEETA+YI CLSTQVKVM+ I++ HLSK
Subjt:  VGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLSK

SwissProt top hitse value%identityAlignment
Q01I07 Transcription factor IBH18.8e-0936.48Show/hide
Query:  FLRLFSRIKSQRSATFASAPPYQLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRRRHKTLMRR-----KRR------PSTSS------------
        FLR  SRI      T          R++R I+ AAYSSMAR A  RRAW+RALL +    RR +TLMRR     +RR      PS +S            
Subjt:  FLRLFSRIKSQRSATFASAPPYQLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRRRHKTLMRR-----KRR------PSTSS------------

Query:  ----------------DDMVGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAI
                              LRRL+PGG  M+  +LLEETA+Y+  L  QV++M+ +
Subjt:  ----------------DDMVGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAI

Q7XR02 Transcription factor IBH16.7e-0936.48Show/hide
Query:  FLRLFSRIKSQRSATFASAPPYQLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRRRHKTLMRR-----KRR------PSTSS------------
        FLR  SRI      T          R++R I+ AAYSSMAR A  RRAW+RALL ++   RR +TLMRR     +RR      PS +S            
Subjt:  FLRLFSRIKSQRSATFASAPPYQLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRRRHKTLMRR-----KRR------PSTSS------------

Query:  ----------------DDMVGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAI
                              LRRL+PGG  M+  +LLEETA+Y+  L  QV++M+ +
Subjt:  ----------------DDMVGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAI

Q9SKX1 Transcription factor IBH18.0e-1038.41Show/hide
Query:  SAITLLNS-TSSRLCFARTFLRLFSRIKSQRSATFASAPPYQLKRQSRRIKMAAYSSMARVA-GRRRAWARALLFRL---------HTRRRHKTLMRRKR
        SA  L+N+    +  FA  FL+  S ++ Q         P Q   + R+IK AAY SMAR A G  R W+RALL R           +RR+ K   +R+R
Subjt:  SAITLLNS-TSSRLCFARTFLRLFSRIKSQRSATFASAPPYQLKRQSRRIKMAAYSSMARVA-GRRRAWARALLFRL---------HTRRRHKTLMRRKR

Query:  RPSTSS--DDMVGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAI
            +   ++   +LR L+PGG  M+   L+EETA+YI CLS QVKVM+ +
Subjt:  RPSTSS--DDMVGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAI

Arabidopsis top hitse value%identityAlignment
AT2G43060.1 ILI1 binding bHLH 15.7e-1138.41Show/hide
Query:  SAITLLNS-TSSRLCFARTFLRLFSRIKSQRSATFASAPPYQLKRQSRRIKMAAYSSMARVA-GRRRAWARALLFRL---------HTRRRHKTLMRRKR
        SA  L+N+    +  FA  FL+  S ++ Q         P Q   + R+IK AAY SMAR A G  R W+RALL R           +RR+ K   +R+R
Subjt:  SAITLLNS-TSSRLCFARTFLRLFSRIKSQRSATFASAPPYQLKRQSRRIKMAAYSSMARVA-GRRRAWARALLFRL---------HTRRRHKTLMRRKR

Query:  RPSTSS--DDMVGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAI
            +   ++   +LR L+PGG  M+   L+EETA+YI CLS QVKVM+ +
Subjt:  RPSTSS--DDMVGKLRRLLPGGETMDVCTLLEETANYIHCLSTQVKVMKAI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAATTCTAAATCAGCTATAACCCTATTGAATTCCACTTCATCCCGACTCTGTTTCGCTCGAACGTTCCTTCGATTGTTCTCCCGAATCAAATCCCAAAGATCCGC
CACCTTTGCCTCCGCTCCTCCATATCAGCTAAAACGCCAGAGTCGACGGATAAAAATGGCTGCATACTCTTCCATGGCTCGGGTTGCAGGGCGAAGGCGAGCTTGGGCTA
GAGCCCTTCTCTTCAGGCTCCATACGCGACGCAGACACAAGACTCTAATGAGGAGAAAAAGAAGACCCTCGACTAGCTCTGATGACATGGTGGGTAAGCTCCGACGCCTG
CTCCCCGGTGGTGAGACCATGGACGTGTGCACGTTGTTGGAGGAAACTGCGAATTACATCCATTGCTTGTCCACGCAGGTTAAGGTGATGAAAGCCATATCTAATCATCA
CTTGTCAAAGGTCAATTGA
mRNA sequenceShow/hide mRNA sequence
GTTCCATTAAATAGTTAACGAAAACGAAGTTCTAATGTTAGGGACTAAACTAAATTTTTTTTCAAAGGTTTACGGACGAAAACAGACATTTAAAAGTTTATGGACCAAAA
TAAGAGAAGAAGCAAAGTTTAGGGATGAAAAAGAGATTTTAACTCTAAATTGTGTATGATTAATAATAATGTAATGAAAAAGAACCCATTTGATTCCAAAAGGCCACAAT
TCCCCATAGCCATCCAATTTCAATCCCTTATTCCTCCCTCCCTCCCTATTGCTTGATTCCTTCCCCTATATGCTTCTTCCTGAGTTGTTTCCACTTTAGAGAGAGAAATT
CTGTGTTTTCTTAAGCTTTGATGGTGTTTGTGTAAATCAATCAAGTTATTATACTTTGTGCTTCAACTCAAGATGTTGCCTTAATTTTGTCCATAATTTCAAGCTAAGAG
GTCCCTCTGTGTCAGTCCCAAATCAGAAAATCTCAACTTGATCCAAACCTTCATTCTTCCCTTTGTCTCTCTCTCTCTTTCAAAAGATATGTTGTGTCAGAGTTAGCTGT
ACAAGGAATTCAAGATCCTTCTCTCTCTCTAAATATTATTATAAATCTTTCCCTCTTCATTTTATCCATGGCTAATTCTAAATCAGCTATAACCCTATTGAATTCCACTT
CATCCCGACTCTGTTTCGCTCGAACGTTCCTTCGATTGTTCTCCCGAATCAAATCCCAAAGATCCGCCACCTTTGCCTCCGCTCCTCCATATCAGCTAAAACGCCAGAGT
CGACGGATAAAAATGGCTGCATACTCTTCCATGGCTCGGGTTGCAGGGCGAAGGCGAGCTTGGGCTAGAGCCCTTCTCTTCAGGCTCCATACGCGACGCAGACACAAGAC
TCTAATGAGGAGAAAAAGAAGACCCTCGACTAGCTCTGATGACATGGTGGGTAAGCTCCGACGCCTGCTCCCCGGTGGTGAGACCATGGACGTGTGCACGTTGTTGGAGG
AAACTGCGAATTACATCCATTGCTTGTCCACGCAGGTTAAGGTGATGAAAGCCATATCTAATCATCACTTGTCAAAGGTCAATTGATCCAAATCTTCTTAAGAAATTCCT
CATTATTAACACAGATCATGATAATATATATATATATATATACATCCAAACACAGCTTAATTAAATTATACACAACATACAGCAAAAGTAGAAAAGAGAGATTTAATTCA
TATGATTAAATATCGGTTTGTAGCCTTTAATTTTTTTTTTCCATGC
Protein sequenceShow/hide protein sequence
MANSKSAITLLNSTSSRLCFARTFLRLFSRIKSQRSATFASAPPYQLKRQSRRIKMAAYSSMARVAGRRRAWARALLFRLHTRRRHKTLMRRKRRPSTSSDDMVGKLRRL
LPGGETMDVCTLLEETANYIHCLSTQVKVMKAISNHHLSKVN