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CSPI06G02960 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G02960
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationChr6:2402949..2403445
RNA-Seq ExpressionCSPI06G02960
SyntenyCSPI06G02960
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032726.1 drebrin-like [Cucumis melo var. makuwa]2.9e-1137.3Show/hide
Query:  MDEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIMELITQNGELQGEFLGKDVTQFTALLRYRHRLVCVAIPTPQ
        MD  IC P+ +GFED IKCQ+  +E    S+KQ+ DL+ + +NAN +++A+++       EL+  N            T F ALL+Y+  L+C  I   +
Subjt:  MDEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIMELITQNGELQGEFLGKDVTQFTALLRYRHRLVCVAIPTPQ

Query:  VPLSLTSPLTRFDPAMQARMNPPQPP
        +P ++  PLTR+DPA++   N P PP
Subjt:  VPLSLTSPLTRFDPAMQARMNPPQPP

KAA0049656.1 hypothetical protein E6C27_scaffold163G001250 [Cucumis melo var. makuwa]1.0e-0852.31Show/hide
Query:  MDEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIMELITQ
        +D+ IC+P+ RGFED  +CQ+ LQE QLRSQKQVSDL+ ++DNA+ S +AQ++Q   ++ +L  Q
Subjt:  MDEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIMELITQ

KGN45931.1 hypothetical protein Csa_004795 [Cucumis sativus]3.9e-3298.67Show/hide
Query:  MDEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIMELITQNGELQGEFLG
        MDEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIMELITQNGELQGE LG
Subjt:  MDEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIMELITQNGELQGEFLG

KGN49653.1 hypothetical protein Csa_018510 [Cucumis sativus]2.4e-1039.81Show/hide
Query:  DEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIMELITQNGEL--QGEFLGKDV--------TQFTALLRYRHRL
        D+ +C+PM  GFED I+CQ+  QE   +SQKQ+ D K ++DN N   + Q+     K+ ELI Q  EL  Q + + + V         QFT+ LRY +  
Subjt:  DEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIMELITQNGEL--QGEFLGKDV--------TQFTALLRYRHRL

Query:  VCVAIPTP
        +C  IPTP
Subjt:  VCVAIPTP

TYK07283.1 hypothetical protein E5676_scaffold606G001830 [Cucumis melo var. makuwa]1.5e-0440Show/hide
Query:  MDEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIMELITQNGELQ
        +D+ +C+PM  GFED I+CQ+ LQ+  L  QKQ+ D + ++ N N   +AQ+     ++ EL +QN EL+
Subjt:  MDEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIMELITQNGELQ

TrEMBL top hitse value%identityAlignment
A0A0A0KDS3 Uncharacterized protein1.9e-3298.67Show/hide
Query:  MDEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIMELITQNGELQGEFLG
        MDEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIMELITQNGELQGE LG
Subjt:  MDEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIMELITQNGELQGEFLG

A0A0A0KJB9 Uncharacterized protein1.2e-1039.81Show/hide
Query:  DEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIMELITQNGEL--QGEFLGKDV--------TQFTALLRYRHRL
        D+ +C+PM  GFED I+CQ+  QE   +SQKQ+ D K ++DN N   + Q+     K+ ELI Q  EL  Q + + + V         QFT+ LRY +  
Subjt:  DEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIMELITQNGEL--QGEFLGKDV--------TQFTALLRYRHRL

Query:  VCVAIPTP
        +C  IPTP
Subjt:  VCVAIPTP

A0A5A7SRQ1 Drebrin-like1.4e-1137.3Show/hide
Query:  MDEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIMELITQNGELQGEFLGKDVTQFTALLRYRHRLVCVAIPTPQ
        MD  IC P+ +GFED IKCQ+  +E    S+KQ+ DL+ + +NAN +++A+++       EL+  N            T F ALL+Y+  L+C  I   +
Subjt:  MDEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIMELITQNGELQGEFLGKDVTQFTALLRYRHRLVCVAIPTPQ

Query:  VPLSLTSPLTRFDPAMQARMNPPQPP
        +P ++  PLTR+DPA++   N P PP
Subjt:  VPLSLTSPLTRFDPAMQARMNPPQPP

A0A5D3C5U6 Uncharacterized protein7.4e-0540Show/hide
Query:  MDEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIMELITQNGELQ
        +D+ +C+PM  GFED I+CQ+ LQ+  L  QKQ+ D + ++ N N   +AQ+     ++ EL +QN EL+
Subjt:  MDEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIMELITQNGELQ

A0A5D3D645 Uncharacterized protein5.0e-0952.31Show/hide
Query:  MDEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIMELITQ
        +D+ IC+P+ RGFED  +CQ+ LQE QLRSQKQVSDL+ ++DNA+ S +AQ++Q   ++ +L  Q
Subjt:  MDEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIMELITQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGAAGGCATCTGTAGGCCAATGGGGAGAGGATTTGAAGATAGGATCAAGTGCCAAAATGTCCTTCAAGAAACGCAATTGCGAAGTCAGAAGCAAGTGAGCGATCT
GAAATTCAGAATGGACAATGCAAACACATCTACTAAGGCACAACTAAATCAACAAGATGAGAAAATAATGGAGCTTATAACGCAAAATGGAGAGCTCCAAGGAGAATTTC
TTGGAAAAGATGTGACACAGTTTACTGCATTATTGAGATATCGACATAGGTTAGTGTGTGTTGCAATCCCAACGCCTCAAGTTCCGCTTAGCTTGACAAGTCCCTTAACT
CGTTTTGATCCGGCGATGCAAGCGAGGATGAATCCACCACAACCACCAACAGAACCACCTCCACAACAACCTCCTCCTCCACCGCCTCAATCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGAAGGCATCTGTAGGCCAATGGGGAGAGGATTTGAAGATAGGATCAAGTGCCAAAATGTCCTTCAAGAAACGCAATTGCGAAGTCAGAAGCAAGTGAGCGATCT
GAAATTCAGAATGGACAATGCAAACACATCTACTAAGGCACAACTAAATCAACAAGATGAGAAAATAATGGAGCTTATAACGCAAAATGGAGAGCTCCAAGGAGAATTTC
TTGGAAAAGATGTGACACAGTTTACTGCATTATTGAGATATCGACATAGGTTAGTGTGTGTTGCAATCCCAACGCCTCAAGTTCCGCTTAGCTTGACAAGTCCCTTAACT
CGTTTTGATCCGGCGATGCAAGCGAGGATGAATCCACCACAACCACCAACAGAACCACCTCCACAACAACCTCCTCCTCCACCGCCTCAATCTTAA
Protein sequenceShow/hide protein sequence
MDEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIMELITQNGELQGEFLGKDVTQFTALLRYRHRLVCVAIPTPQVPLSLTSPLT
RFDPAMQARMNPPQPPTEPPPQQPPPPPPQS