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CSPI06G03260 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G03260
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTy1-copia retrotransposon protein
Genome locationChr6:2899500..2899815
RNA-Seq ExpressionCSPI06G03260
SyntenyCSPI06G03260
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032318.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]8.6e-1864.56Show/hide
Query:  KTHKGRNNSRLSRK-----IEKKKLICYVYGKEGHKSYQSHQRKGRSNQKPVPQANLAAQDDDVIVAIAKVNLIENKTD
        K HKG+N+ +   K     I+KKKL+CYV GKEGHKSYQ +QRKGR +QKP PQANLA QD ++I AI +VNLIENKTD
Subjt:  KTHKGRNNSRLSRK-----IEKKKLICYVYGKEGHKSYQSHQRKGRSNQKPVPQANLAAQDDDVIVAIAKVNLIENKTD

KAA0048396.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]5.0e-1863.29Show/hide
Query:  KTHKGRNNSRLS-----RKIEKKKLICYVYGKEGHKSYQSHQRKGRSNQKPVPQANLAAQDDDVIVAIAKVNLIENKTD
        K HKG+N+ +       R+I+KKKL+CYV GKEGHKSYQ +QRKGR NQKP PQANLA QD+++I AI + NLIENKT+
Subjt:  KTHKGRNNSRLS-----RKIEKKKLICYVYGKEGHKSYQSHQRKGRSNQKPVPQANLAAQDDDVIVAIAKVNLIENKTD

KAA0049793.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]6.6e-1864.56Show/hide
Query:  KTHKGRNNSRLSRK-----IEKKKLICYVYGKEGHKSYQSHQRKGRSNQKPVPQANLAAQDDDVIVAIAKVNLIENKTD
        K HKG+N+ +   K     I+KKKL+CYV GKEGHKSYQ +QRKGR NQKP PQANLA QD ++I AI + NLIENKTD
Subjt:  KTHKGRNNSRLSRK-----IEKKKLICYVYGKEGHKSYQSHQRKGRSNQKPVPQANLAAQDDDVIVAIAKVNLIENKTD

KAA0063949.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]8.6e-1865.33Show/hide
Query:  GKTHKGRNNSRLSRKIEKKKLICYVYGKEGHKSYQSHQRKGRSNQKPVPQANLAAQDDDVIVAIAKVNLIENKTD
        GKT +  N+  L  +I+KKKL+CYV GKEGHKSYQ +QRKGR +QKP PQANLA QD ++I AI + NLIENKTD
Subjt:  GKTHKGRNNSRLSRKIEKKKLICYVYGKEGHKSYQSHQRKGRSNQKPVPQANLAAQDDDVIVAIAKVNLIENKTD

TYK05191.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]8.6e-1865.33Show/hide
Query:  GKTHKGRNNSRLSRKIEKKKLICYVYGKEGHKSYQSHQRKGRSNQKPVPQANLAAQDDDVIVAIAKVNLIENKTD
        GKT +  N+  L  +I+KKKL+CYV GKEGHKSYQ +QRKGR +QKP PQANLA QD ++I AI + NLIENKTD
Subjt:  GKTHKGRNNSRLSRKIEKKKLICYVYGKEGHKSYQSHQRKGRSNQKPVPQANLAAQDDDVIVAIAKVNLIENKTD

TrEMBL top hitse value%identityAlignment
A0A5A7SP23 Ty1-copia retrotransposon protein4.2e-1864.56Show/hide
Query:  KTHKGRNNSRLSRK-----IEKKKLICYVYGKEGHKSYQSHQRKGRSNQKPVPQANLAAQDDDVIVAIAKVNLIENKTD
        K HKG+N+ +   K     I+KKKL+CYV GKEGHKSYQ +QRKGR +QKP PQANLA QD ++I AI +VNLIENKTD
Subjt:  KTHKGRNNSRLSRK-----IEKKKLICYVYGKEGHKSYQSHQRKGRSNQKPVPQANLAAQDDDVIVAIAKVNLIENKTD

A0A5A7SRD3 Ty1-copia retrotransposon protein4.2e-1864.56Show/hide
Query:  KTHKGRNNSRLSRK-----IEKKKLICYVYGKEGHKSYQSHQRKGRSNQKPVPQANLAAQDDDVIVAIAKVNLIENKTD
        K HKG+N+ +   K     I+KKKL+CYV GKEGHKSYQ +QRKGR +QKP PQANLA QD ++I AI K NLIENKTD
Subjt:  KTHKGRNNSRLSRK-----IEKKKLICYVYGKEGHKSYQSHQRKGRSNQKPVPQANLAAQDDDVIVAIAKVNLIENKTD

A0A5A7U1P8 Ty1-copia retrotransposon protein3.2e-1864.56Show/hide
Query:  KTHKGRNNSRLSRK-----IEKKKLICYVYGKEGHKSYQSHQRKGRSNQKPVPQANLAAQDDDVIVAIAKVNLIENKTD
        K HKG+N+ +   K     I+KKKL+CYV GKEGHKSYQ +QRKGR NQKP PQANLA QD ++I AI + NLIENKTD
Subjt:  KTHKGRNNSRLSRK-----IEKKKLICYVYGKEGHKSYQSHQRKGRSNQKPVPQANLAAQDDDVIVAIAKVNLIENKTD

A0A5A7VEJ0 Ty1-copia retrotransposon protein4.2e-1865.33Show/hide
Query:  GKTHKGRNNSRLSRKIEKKKLICYVYGKEGHKSYQSHQRKGRSNQKPVPQANLAAQDDDVIVAIAKVNLIENKTD
        GKT +  N+  L  +I+KKKL+CYV GKEGHKSYQ +QRKGR +QKP PQANLA QD ++I AI + NLIENKTD
Subjt:  GKTHKGRNNSRLSRKIEKKKLICYVYGKEGHKSYQSHQRKGRSNQKPVPQANLAAQDDDVIVAIAKVNLIENKTD

A0A5D3BJE2 Ty1-copia retrotransposon protein2.4e-1863.29Show/hide
Query:  KTHKGRNNSRLS-----RKIEKKKLICYVYGKEGHKSYQSHQRKGRSNQKPVPQANLAAQDDDVIVAIAKVNLIENKTD
        K HKG+N+ +       R+I+KKKL+CYV GKEGHKSYQ +QRKGR NQKP PQANLA QD+++I AI + NLIENKT+
Subjt:  KTHKGRNNSRLS-----RKIEKKKLICYVYGKEGHKSYQSHQRKGRSNQKPVPQANLAAQDDDVIVAIAKVNLIENKTD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAAAACTCACAAAGGAAGGAACAATTCAAGGTTATCGAGAAAAATTGAGAAGAAGAAGTTGATTTGCTATGTCTATGGGAAGGAAGGACACAAATCTTATCAAAG
TCATCAAAGGAAAGGGAGATCAAACCAGAAACCTGTACCACAAGCCAATCTTGCTGCACAAGATGACGATGTCATAGTAGCTATTGCGAAGGTCAATCTGATTGAAAATA
AGACGGACTAG
mRNA sequenceShow/hide mRNA sequence
GTTGAATCTTCTGTTGTTAACAGAGACAGGTCCTTAGGTTAAAAGACAGAATGGGAAAAACTCACAAAGGAAGGAACAATTCAAGGTTATCGAGAAAAATTGAGAAGAAG
AAGTTGATTTGCTATGTCTATGGGAAGGAAGGACACAAATCTTATCAAAGTCATCAAAGGAAAGGGAGATCAAACCAGAAACCTGTACCACAAGCCAATCTTGCTGCACA
AGATGACGATGTCATAGTAGCTATTGCGAAGGTCAATCTGATTGAAAATAAGACGGACTAGATTCTCGATACTAGAGCTTCAAGACACTTTTGCAC
Protein sequenceShow/hide protein sequence
MGKTHKGRNNSRLSRKIEKKKLICYVYGKEGHKSYQSHQRKGRSNQKPVPQANLAAQDDDVIVAIAKVNLIENKTD