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CSPI06G03340 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G03340
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationChr6:2974239..2974613
RNA-Seq ExpressionCSPI06G03340
SyntenyCSPI06G03340
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN45973.1 hypothetical protein Csa_005655 [Cucumis sativus]1.4e-3094.67Show/hide
Query:  MPEISLDKLHLALFPLILHNEAKQWANALEEEEATTSDNLIEKFMKKFFEPIENAIRRQDPMTFEQSNSENLIDA
        MP+ISLDKLHLALFPLILHNE KQWANALEEEEATTSDNLIEKFMKKFF PIENAIRRQD MTFEQSNSENLIDA
Subjt:  MPEISLDKLHLALFPLILHNEAKQWANALEEEEATTSDNLIEKFMKKFFEPIENAIRRQDPMTFEQSNSENLIDA

WP_217833177.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]2.2e-1544.33Show/hide
Query:  GHRREDPHEYIRNFYSICASFNMPEISLDKLHLALFPLILHNEAKQWANALEEEEATTSDNLIEKFMKKFFEPIENAIRRQDPMTFEQSNSENLIDA
        G   EDPH ++++F  IC++F M  +  D + L LFP  L +EA+QWA + E  E TT   ++EKFM+K+F P  +A RR+D +TFEQ +SE   +A
Subjt:  GHRREDPHEYIRNFYSICASFNMPEISLDKLHLALFPLILHNEAKQWANALEEEEATTSDNLIEKFMKKFFEPIENAIRRQDPMTFEQSNSENLIDA

WP_217833228.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]5.9e-1648.39Show/hide
Query:  EDPHEYIRNFYSICASFNMPEISLDKLHLALFPLILHNEAKQWANALEEEEATTSDNLIEKFMKKFFEPIENAIRRQDPMTFEQSNSENLIDA
        EDPH ++++F  IC +F +P IS D + L LFP  L +EA+QWA +LE  E TT + +IEKFMKK+F   ENA RR+D   F+Q + E + +A
Subjt:  EDPHEYIRNFYSICASFNMPEISLDKLHLALFPLILHNEAKQWANALEEEEATTSDNLIEKFMKKFFEPIENAIRRQDPMTFEQSNSENLIDA

XP_038880527.1 uncharacterized protein LOC120072192 [Benincasa hispida]7.6e-1646.81Show/hide
Query:  GHRREDPHEYIRNFYSICASFNMPEISLDKLHLALFPLILHNEAKQWANALEEEEATTSDNLIEKFMKKFFEPIENAIRRQDPMTFEQSNSENL
        G   EDPH +++ F   C  F +P I+ +K+ L+LFP  L ++AKQW ++LE EE TT + L+EKFM+K+F P  NA RR++ M FEQ + E L
Subjt:  GHRREDPHEYIRNFYSICASFNMPEISLDKLHLALFPLILHNEAKQWANALEEEEATTSDNLIEKFMKKFFEPIENAIRRQDPMTFEQSNSENL

XP_038889363.1 uncharacterized protein LOC120079279 [Benincasa hispida]2.7e-1343.62Show/hide
Query:  GHRREDPHEYIRNFYSICASFNMPEISLDKLHLALFPLILHNEAKQWANALEEEEATTSDNLIEKFMKKFFEPIENAIRRQDPMTFEQSNSENL
        G + ED H ++ +F  +C++F++  ++ + + L LFP  L +EA  WA++LE  E T+ D L+E FMKKFF P  NA RR+D + FEQ N+E L
Subjt:  GHRREDPHEYIRNFYSICASFNMPEISLDKLHLALFPLILHNEAKQWANALEEEEATTSDNLIEKFMKKFFEPIENAIRRQDPMTFEQSNSENL

TrEMBL top hitse value%identityAlignment
A0A0A0K974 Retrotrans_gag domain-containing protein6.9e-3194.67Show/hide
Query:  MPEISLDKLHLALFPLILHNEAKQWANALEEEEATTSDNLIEKFMKKFFEPIENAIRRQDPMTFEQSNSENLIDA
        MP+ISLDKLHLALFPLILHNE KQWANALEEEEATTSDNLIEKFMKKFF PIENAIRRQD MTFEQSNSENLIDA
Subjt:  MPEISLDKLHLALFPLILHNEAKQWANALEEEEATTSDNLIEKFMKKFFEPIENAIRRQDPMTFEQSNSENLIDA

A0A392NID4 Retrotrans_gag domain-containing protein (Fragment)9.4e-1238.71Show/hide
Query:  EDPHEYIRNFYSICASFNMPEISLDKLHLALFPLILHNEAKQWANALEEEEATTSDNLIEKFMKKFFEPIENAIRRQDPMTFEQSNSENLIDA
        EDPH +++ F  + ++F +P I++D   L LFP  L +  K W N+LE       + L EKF+ K+F P++NA  R D  +F Q + E L DA
Subjt:  EDPHEYIRNFYSICASFNMPEISLDKLHLALFPLILHNEAKQWANALEEEEATTSDNLIEKFMKKFFEPIENAIRRQDPMTFEQSNSENLIDA

A0A392QG70 Retrotrans_gag domain-containing protein (Fragment)1.2e-1139.18Show/hide
Query:  GHRREDPHEYIRNFYSICASFNMPEISLDKLHLALFPLILHNEAKQWANALEEEEATTSDNLIEKFMKKFFEPIENAIRRQDPMTFEQSNSENLIDA
        G   EDPH ++R F  + ++F +P I+ +   L LFP  L + AK W N+LE     T + L EKF+ K+F PI+NA  R +  +F Q+  E+L +A
Subjt:  GHRREDPHEYIRNFYSICASFNMPEISLDKLHLALFPLILHNEAKQWANALEEEEATTSDNLIEKFMKKFFEPIENAIRRQDPMTFEQSNSENLIDA

A0A5B6UFL2 Retrotransposon gag protein1.1e-1238.46Show/hide
Query:  QECLTIWGHRREDPHEYIRNFYSICASFNMPEISLDKLHLALFPLILHNEAKQWANALEEEEATTSDNLIEKFMKKFFEPIENAIRRQDPMTFEQSNSEN
        Q+ +   G + EDP+ ++ NF  +C +F +  +S D +HL LFP  L N+AKQW N+L     TT + + EKF+ K+F P + A  R D  +F Q + E 
Subjt:  QECLTIWGHRREDPHEYIRNFYSICASFNMPEISLDKLHLALFPLILHNEAKQWANALEEEEATTSDNLIEKFMKKFFEPIENAIRRQDPMTFEQSNSEN

Query:  LIDA
          DA
Subjt:  LIDA

A0A5B6UZH7 Retrotransposon gag protein7.2e-1239.42Show/hide
Query:  QECLTIWGHRREDPHEYIRNFYSICASFNMPEISLDKLHLALFPLILHNEAKQWANALEEEEATTSDNLIEKFMKKFFEPIENAIRRQDPMTFEQSNSEN
        Q+ +   G + EDP+ +I NF   C +F +  +S D +HL LFP  L N+AKQW N+L     TT + + EKF+ K+  P + A  R D  +F Q + E 
Subjt:  QECLTIWGHRREDPHEYIRNFYSICASFNMPEISLDKLHLALFPLILHNEAKQWANALEEEEATTSDNLIEKFMKKFFEPIENAIRRQDPMTFEQSNSEN

Query:  LIDA
        L DA
Subjt:  LIDA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATCCAAAATTTAAGAAAACTCATGGTTCAAAATCAAGTCGATATGCTTTAGATGATCAAGAATGCTTGACAATTTGGGGGCACCGGCGTGAAGATCCTCATGAGTA
TATAAGAAACTTCTACTCTATTTGTGCATCGTTTAATATGCCTGAAATATCGTTAGACAAACTGCATTTAGCACTATTTCCGCTCATATTACACAATGAAGCTAAACAAT
GGGCCAATGCTTTGGAAGAAGAAGAAGCAACAACATCGGACAACTTGATTGAAAAATTTATGAAGAAATTCTTTGAACCCATTGAGAATGCGATAAGAAGACAAGACCCG
ATGACCTTCGAACAGAGCAATAGCGAGAACTTGATAGACGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTATCCAAAATTTAAGAAAACTCATGGTTCAAAATCAAGTCGATATGCTTTAGATGATCAAGAATGCTTGACAATTTGGGGGCACCGGCGTGAAGATCCTCATGAGTA
TATAAGAAACTTCTACTCTATTTGTGCATCGTTTAATATGCCTGAAATATCGTTAGACAAACTGCATTTAGCACTATTTCCGCTCATATTACACAATGAAGCTAAACAAT
GGGCCAATGCTTTGGAAGAAGAAGAAGCAACAACATCGGACAACTTGATTGAAAAATTTATGAAGAAATTCTTTGAACCCATTGAGAATGCGATAAGAAGACAAGACCCG
ATGACCTTCGAACAGAGCAATAGCGAGAACTTGATAGACGCTTAG
Protein sequenceShow/hide protein sequence
MYPKFKKTHGSKSSRYALDDQECLTIWGHRREDPHEYIRNFYSICASFNMPEISLDKLHLALFPLILHNEAKQWANALEEEEATTSDNLIEKFMKKFFEPIENAIRRQDP
MTFEQSNSENLIDA