CuGenDBv2

Gene ID	CSPI06G03620
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ribosomal L18p/L5e family protein
Genome location	Chr6:3303040..3304085
RNA-Seq Expression	CSPI06G03620
Synteny	CSPI06G03620
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0008097 - 5S rRNA binding (molecular function)
InterPro domains	IPR005484 - Ribosomal protein L18

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAE8646622.1 hypothetical protein Csa_005380 [Cucumis sativus]

2.0e-59

98.37

Show/hide

Query:  MSVNQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
        MS+NQNHLLRLVLSCRKITAQVTNP TSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
Subjt:  MSVNQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM

Query:  VLPLFDSVQRSGVAVDGAEKLGT
        VLPLFDSVQRSGVAVDGAEKLGT
Subjt:  VLPLFDSVQRSGVAVDGAEKLGT

XP_004140885.1 uncharacterized protein LOC101204363 [Cucumis sativus]

4.6e-61

98.41

Show/hide

Query:  MSVNQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
        MS+NQNHLLRLVLSCRKITAQVTNP TSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
Subjt:  MSVNQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM

Query:  VLPLFDSVQRSGVAVDGAEKLGTGSI
        VLPLFDSVQRSGVAVDGAEKLGTGSI
Subjt:  VLPLFDSVQRSGVAVDGAEKLGTGSI

XP_016900104.1 PREDICTED: uncharacterized protein LOC103488672 [Cucumis melo]

7.4e-59

95.24

Show/hide

Query:  MSVNQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
        MS+NQNHLLRLVLSCRKITAQVTNP TSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVG KLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
Subjt:  MSVNQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM

Query:  VLPLFDSVQRSGVAVDGAEKLGTGSI
        VLPLFDSVQRSG+AVDG EKLG GSI
Subjt:  VLPLFDSVQRSGVAVDGAEKLGTGSI

XP_038884098.1 uncharacterized protein LOC120075027 isoform X5 [Benincasa hispida]

9.7e-59

94.4

Show/hide

Query:  MSVNQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
        MS++QNHLLRLVLSCRKITAQVTNP TSSI+AMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEE SRP+YYRKM
Subjt:  MSVNQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM

Query:  VLPLFDSVQRSGVAVDGAEKLGTGS
        VLPLFDSVQRSGVAVDGAEKLGTG+
Subjt:  VLPLFDSVQRSGVAVDGAEKLGTGS

XP_038884099.1 uncharacterized protein LOC120075027 isoform X6 [Benincasa hispida]

9.7e-59

94.4

Show/hide

Query:  MSVNQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
        MS++QNHLLRLVLSCRKITAQVTNP TSSI+AMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEE SRP+YYRKM
Subjt:  MSVNQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM

Query:  VLPLFDSVQRSGVAVDGAEKLGTGS
        VLPLFDSVQRSGVAVDGAEKLGTG+
Subjt:  VLPLFDSVQRSGVAVDGAEKLGTGS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KE39 Uncharacterized protein

2.3e-61

98.41

Show/hide

Query:  MSVNQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
        MS+NQNHLLRLVLSCRKITAQVTNP TSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
Subjt:  MSVNQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM

Query:  VLPLFDSVQRSGVAVDGAEKLGTGSI
        VLPLFDSVQRSGVAVDGAEKLGTGSI
Subjt:  VLPLFDSVQRSGVAVDGAEKLGTGSI

A0A1S4DVU4 uncharacterized protein LOC103488672

3.6e-59

95.24

Show/hide

Query:  MSVNQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
        MS+NQNHLLRLVLSCRKITAQVTNP TSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVG KLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
Subjt:  MSVNQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM

Query:  VLPLFDSVQRSGVAVDGAEKLGTGSI
        VLPLFDSVQRSG+AVDG EKLG GSI
Subjt:  VLPLFDSVQRSGVAVDGAEKLGTGSI

A0A5D3BWW4 Uncharacterized protein

3.6e-59

95.24

Show/hide

Query:  MSVNQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
        MS+NQNHLLRLVLSCRKITAQVTNP TSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVG KLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
Subjt:  MSVNQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM

Query:  VLPLFDSVQRSGVAVDGAEKLGTGSI
        VLPLFDSVQRSG+AVDG EKLG GSI
Subjt:  VLPLFDSVQRSGVAVDGAEKLGTGSI

A0A6J1EVG7 uncharacterized protein LOC111436340

1.8e-55

89.68

Show/hide

Query:  MSVNQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
        MS+NQNHLLRLVLSCRKITAQVTNP TS+IIAMASSSEQEFVAY RSKLHRFPRSNNFWDSK+ASRVGEKLGHRLKEIGVSDVRIDLAEELSRP+ YR  
Subjt:  MSVNQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM

Query:  VLPLFDSVQRSGVAVDGAEKLGTGSI
        VLPLFDSV+RSGVAV+GAEKLG+G+I
Subjt:  VLPLFDSVQRSGVAVDGAEKLGTGSI

A0A6J1JZ79 uncharacterized protein LOC111488745

5.7e-57

90.48

Show/hide

Query:  MSVNQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM
        MS+NQNHLLRLVLSCRKITAQVTNP TS+IIAMASSSEQEFVAYY SKLHRFPRSNNFWDSK+ASRVGEKLGHRLKEIGVSDVRIDLAEELSRP+YYR  
Subjt:  MSVNQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKM

Query:  VLPLFDSVQRSGVAVDGAEKLGTGSI
        VLPLFDSV+RSGVAV+GAEKLG+G+I
Subjt:  VLPLFDSVQRSGVAVDGAEKLGTGSI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G43310.1 Ribosomal L18p/L5e family protein

1.1e-41

68.29

Show/hide

Query:  NQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLP
        +++HLL+LVLSCRKITAQVT P +S+IIAMASSSEQEF+A  R+ L+RFP SN+FWDSK ASRVGEKLG RL+E+GV  V ID  EE+SRPI++RK VLP
Subjt:  NQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLP

Query:  LFDSVQRSGVAVDGAEKLGTGSI
        LFDSV+R+G+ VDG E+L   S+
Subjt:  LFDSVQRSGVAVDGAEKLGTGSI

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCCGTTAACCAAAACCACCTCCTCCGCCTTGTTCTTTCCTGCCGGAAAATCACTGCCCAGGTCACCAATCCAACCACCTCCTCCATCATCGCCATGGCTTCTTCCTC
CGAGCAGGAATTCGTCGCCTATTACCGCTCTAAACTCCACCGTTTTCCTCGATCAAACAATTTCTGGGACTCCAAAGTCGCCTCTCGCGTCGGCGAAAAGCTCGGCCACC
GTTTGAAGGAGATCGGCGTCTCCGATGTTCGGATTGATCTCGCTGAAGAGCTATCCCGCCCTATTTACTACCGGAAGATGGTTCTGCCGCTCTTTGATTCTGTTCAGCGC
TCCGGCGTCGCCGTTGATGGGGCTGAGAAGCTTGGAACAGGTTCGATCTAG

mRNA sequence

Show/hide mRNA sequence

GTTTTGAAAATAAAAAAAAAAGGTTAAAAATCAAAATTCCCAAATATAAAAATTATGATTTCCAAATTGTTCAATCAAAGTTCAATGGAAGAAGAGAAGAGTAGAAGGCG
ATTTTGAAGCCCTAATAAATACGCCGATTTCCTCATCATGTCCGTTAACCAAAACCACCTCCTCCGCCTTGTTCTTTCCTGCCGGAAAATCACTGCCCAGGTCACCAATC
CAACCACCTCCTCCATCATCGCCATGGCTTCTTCCTCCGAGCAGGAATTCGTCGCCTATTACCGCTCTAAACTCCACCGTTTTCCTCGATCAAACAATTTCTGGGACTCC
AAAGTCGCCTCTCGCGTCGGCGAAAAGCTCGGCCACCGTTTGAAGGAGATCGGCGTCTCCGATGTTCGGATTGATCTCGCTGAAGAGCTATCCCGCCCTATTTACTACCG
GAAGATGGTTCTGCCGCTCTTTGATTCTGTTCAGCGCTCCGGCGTCGCCGTTGATGGGGCTGAGAAGCTTGGAACAGGTTCGATCTAGCCTCGACTATTGAGATTGAATT
TAGGGCACATATAATTCCTTATCCTTCATGTCGATTAATTATACCAATTTTGACACATTTTTTTTAATCTCTCTCTCTCTCTCGGATTAAAAACTGTAATAATATAAATT
GTTTTCATAATTAATTAAAGAAATAGAGAAGAGACCAATTTCCCCCTTGAAATTCAGGCCATTTTATCCTTGACTGATTCGTTGGACTACATACAGATTATACTTGGCTG
AAAGAAAAAAGGATTTACATGACACCCAAAATTTTGAGTATAAATTGATATTTTTTTACACAAATTATGGTGTTAGAATTAGTTGTTCTAGACATTGAGGGTTTGTTTTT
TAGATGATACGATAATATTTGAAGAAAAGTGATTGAATGAAAAATATAATTTCTTTTTAATGTTTGGTAGGGTGTGATTGGTGTCTGGGGAACGGTTATATGTTATGATA
AAAGGGGTTTGGGGAAGGGTAAACCTATGTTATGATAAAAGGTGTTTGGGGATGGG

Protein sequence

Show/hide protein sequence

MSVNQNHLLRLVLSCRKITAQVTNPTTSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQR
SGVAVDGAEKLGTGSI

CSPI06G03620 (gene) of Cucumber (PI 183967) v1 genome