; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI06G04070 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G04070
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
Genome locationChr6:3771811..3773325
RNA-Seq ExpressionCSPI06G04070
SyntenyCSPI06G04070
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6578826.1 40S ribosomal protein S17-3, partial [Cucurbita argyrosperma subsp. sororia]4.9e-0652.63Show/hide
Query:  GVFAAMGNL---YLLPFYSLEDPIAISLPEDMYDKMRMEVEKWKKRTIWVVFNSNFRKRVVDSFTNRVDMEFWVIG
        GVF   G L   +L PF S  D  ++ L EDM++K RMEVEK KKR + VVFNS+FRKR+ D  TN + +E  VIG
Subjt:  GVFAAMGNL---YLLPFYSLEDPIAISLPEDMYDKMRMEVEKWKKRTIWVVFNSNFRKRVVDSFTNRVDMEFWVIG

KAG7016354.1 hypothetical protein SDJN02_21462, partial [Cucurbita argyrosperma subsp. argyrosperma]6.8e-1650.45Show/hide
Query:  GVFAAMGNL---YLLPFYSLEDPIAISLPEDMYDKMRMEVEKWKKRTIWVVFNSNFRKRVVDSFTNRVDMEFWVIGIYGFSTAFKLARRKVVVAIWLAFY
        GVF   G L   +L PF S  D  ++ L EDM++K RMEVEK KKR + VVFNS+FRKR+ D  TN + +E W+I + GFS A KLARR           
Subjt:  GVFAAMGNL---YLLPFYSLEDPIAISLPEDMYDKMRMEVEKWKKRTIWVVFNSNFRKRVVDSFTNRVDMEFWVIGIYGFSTAFKLARRKVVVAIWLAFY

Query:  WLVGDRLTASC
        WL+GDRL  SC
Subjt:  WLVGDRLTASC

KGN46050.1 hypothetical protein Csa_004804 [Cucumis sativus]2.3e-56100Show/hide
Query:  MGVFAAMGNLYLLPFYSLEDPIAISLPEDMYDKMRMEVEKWKKRTIWVVFNSNFRKRVVDSFTNRVDMEFWVIGIYGFSTAFKLARRKVVVAIWLAFYWL
        MGVFAAMGNLYLLPFYSLEDPIAISLPEDMYDKMRMEVEKWKKRTIWVVFNSNFRKRVVDSFTNRVDMEFWVIGIYGFSTAFKLARRKVVVAIWLAFYWL
Subjt:  MGVFAAMGNLYLLPFYSLEDPIAISLPEDMYDKMRMEVEKWKKRTIWVVFNSNFRKRVVDSFTNRVDMEFWVIGIYGFSTAFKLARRKVVVAIWLAFYWL

Query:  VGDRLTASCS
        VGDRLTASCS
Subjt:  VGDRLTASCS

TrEMBL top hitse value%identityAlignment
A0A0A0K8K0 Uncharacterized protein1.1e-56100Show/hide
Query:  MGVFAAMGNLYLLPFYSLEDPIAISLPEDMYDKMRMEVEKWKKRTIWVVFNSNFRKRVVDSFTNRVDMEFWVIGIYGFSTAFKLARRKVVVAIWLAFYWL
        MGVFAAMGNLYLLPFYSLEDPIAISLPEDMYDKMRMEVEKWKKRTIWVVFNSNFRKRVVDSFTNRVDMEFWVIGIYGFSTAFKLARRKVVVAIWLAFYWL
Subjt:  MGVFAAMGNLYLLPFYSLEDPIAISLPEDMYDKMRMEVEKWKKRTIWVVFNSNFRKRVVDSFTNRVDMEFWVIGIYGFSTAFKLARRKVVVAIWLAFYWL

Query:  VGDRLTASCS
        VGDRLTASCS
Subjt:  VGDRLTASCS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGTGTTTGCAGCAATGGGTAATCTCTATCTCCTTCCATTTTACTCGTTAGAAGACCCAATCGCCATATCTTTACCTGAAGATATGTACGACAAAATGAGAATGGA
AGTGGAGAAATGGAAGAAAAGGACGATTTGGGTTGTCTTTAATTCCAATTTCCGCAAAAGGGTTGTTGATTCTTTTACCAATAGAGTGGATATGGAGTTTTGGGTTATCG
GCATTTATGGATTCTCGACTGCTTTCAAGTTAGCGAGGAGGAAAGTGGTTGTGGCGATATGGCTGGCTTTCTATTGGTTAGTCGGCGATCGATTGACTGCGTCTTGTAGC
TGA
mRNA sequenceShow/hide mRNA sequence
TACAAAATGGGTGTGTTTGCAGCAATGGGTAATCTCTATCTCCTTCCATTTTACTCGTTAGAAGACCCAATCGCCATATCTTTACCTGAAGATATGTACGACAAAATGAG
AATGGAAGTGGAGAAATGGAAGAAAAGGACGATTTGGGTTGTCTTTAATTCCAATTTCCGCAAAAGGGTTGTTGATTCTTTTACCAATAGAGTGGATATGGAGTTTTGGG
TTATCGGCATTTATGGATTCTCGACTGCTTTCAAGTTAGCGAGGAGGAAAGTGGTTGTGGCGATATGGCTGGCTTTCTATTGGTTAGTCGGCGATCGATTGACTGCGTCT
TGTAGCTGATCAGAAAGGTCTTCTGTCATTTATCTTAATGATATCGCTGCTTAAGAGTCCAGAAGCTTCATGTTTTAGAATTCTGGAGTATTGAAGTTAGTTGCTGGGTT
CACCTTTAAGAGGATATCAGGAAGCGTTCACAATTGAGTATGGAATGACCCAGCCACTGGTTAG
Protein sequenceShow/hide protein sequence
MGVFAAMGNLYLLPFYSLEDPIAISLPEDMYDKMRMEVEKWKKRTIWVVFNSNFRKRVVDSFTNRVDMEFWVIGIYGFSTAFKLARRKVVVAIWLAFYWLVGDRLTASCS