; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI06G04920 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G04920
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationChr6:4485849..4486722
RNA-Seq ExpressionCSPI06G04920
SyntenyCSPI06G04920
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ96663.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.6e-9175.23Show/hide
Query:  VDQRKYKKLKMQIFMGENPVSWVYRAEHFFEINNLPEAEKVKVVVVSFGQDEVDWYRWSHNRKKVESWEDLKGRMFKFFKDTGKKNLVARLIRIQQDGSY
        +D+ KYKKL+M +F+GENP SWVYRAEHFFEINNLPEAEKVKV VVSFGQDEVDWYRWSHNR+KVESWEDLK RMF+FF+DTG+K+L ARLIRIQQ+GSY
Subjt:  VDQRKYKKLKMQIFMGENPVSWVYRAEHFFEINNLPEAEKVKVVVVSFGQDEVDWYRWSHNRKKVESWEDLKGRMFKFFKDTGKKNLVARLIRIQQDGSY

Query:  NDYVKKFVNYSAPLPHMAESVPRDEFVTGLKPDLQAEVICRHPQTLEDCMKEAQLVNDRNLALKLAKIEWGLMEQKKREGNSGKNQ-GGQKGVQRKTKFP
        +DYVKKFVNYSAPLPHMAESV RD F+TGL+P LQAEV+ RHPQTLEDCM  AQLVNDRNLALKLA+ E G++E K+ E    K Q   +KG+ RK +F 
Subjt:  NDYVKKFVNYSAPLPHMAESVPRDEFVTGLKPDLQAEVICRHPQTLEDCMKEAQLVNDRNLALKLAKIEWGLMEQKKREGNSGKNQ-GGQKGVQRKTKFP

Query:  MKQVTIPIRGNYQKSEPPLKRL
        MKQ+TIP++G+YQK EPP+KRL
Subjt:  MKQVTIPIRGNYQKSEPPLKRL

TYK15071.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.6e-9175.23Show/hide
Query:  VDQRKYKKLKMQIFMGENPVSWVYRAEHFFEINNLPEAEKVKVVVVSFGQDEVDWYRWSHNRKKVESWEDLKGRMFKFFKDTGKKNLVARLIRIQQDGSY
        +D+ KYKKL+M +F+GENP SWVYRAEHFFEINNLPEAEKVKV VVSFGQDEVDWYRWSHNR+KVESWEDLK RMF+FF+DTG+K+L ARLIRIQQ+GSY
Subjt:  VDQRKYKKLKMQIFMGENPVSWVYRAEHFFEINNLPEAEKVKVVVVSFGQDEVDWYRWSHNRKKVESWEDLKGRMFKFFKDTGKKNLVARLIRIQQDGSY

Query:  NDYVKKFVNYSAPLPHMAESVPRDEFVTGLKPDLQAEVICRHPQTLEDCMKEAQLVNDRNLALKLAKIEWGLMEQKKREGNSGKNQ-GGQKGVQRKTKFP
        +DYVKKFVNYSAPLPHMAESV RD F+TGL+P LQAEV+ RHPQTLEDCM  AQLVNDRNLALKLA+ E G++E K+ E    K Q   +KG+ RK +F 
Subjt:  NDYVKKFVNYSAPLPHMAESVPRDEFVTGLKPDLQAEVICRHPQTLEDCMKEAQLVNDRNLALKLAKIEWGLMEQKKREGNSGKNQ-GGQKGVQRKTKFP

Query:  MKQVTIPIRGNYQKSEPPLKRL
        MKQ+TIP++G+YQK EPP+KRL
Subjt:  MKQVTIPIRGNYQKSEPPLKRL

TYK28944.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.6e-9175.23Show/hide
Query:  VDQRKYKKLKMQIFMGENPVSWVYRAEHFFEINNLPEAEKVKVVVVSFGQDEVDWYRWSHNRKKVESWEDLKGRMFKFFKDTGKKNLVARLIRIQQDGSY
        +D+ KYKKL+M +F+GENP SWVYRAEHFFEINNLPEAEKVKV VVSFGQDEVDWYRWSHNR+KVESWEDLK RMF+FF+DTG+K+L ARLIRIQQ+GSY
Subjt:  VDQRKYKKLKMQIFMGENPVSWVYRAEHFFEINNLPEAEKVKVVVVSFGQDEVDWYRWSHNRKKVESWEDLKGRMFKFFKDTGKKNLVARLIRIQQDGSY

Query:  NDYVKKFVNYSAPLPHMAESVPRDEFVTGLKPDLQAEVICRHPQTLEDCMKEAQLVNDRNLALKLAKIEWGLMEQKKREGNSGKNQ-GGQKGVQRKTKFP
        +DYVKKFVNYSAPLPHMAESV RD F+TGL+P LQAEV+ RHPQTLEDCM  AQLVNDRNLALKLA+ E G++E K+ E    K Q   +KG+ RK +F 
Subjt:  NDYVKKFVNYSAPLPHMAESVPRDEFVTGLKPDLQAEVICRHPQTLEDCMKEAQLVNDRNLALKLAKIEWGLMEQKKREGNSGKNQ-GGQKGVQRKTKFP

Query:  MKQVTIPIRGNYQKSEPPLKRL
        MKQ+TIP++G+YQK EPP+KRL
Subjt:  MKQVTIPIRGNYQKSEPPLKRL

XP_031744430.1 uncharacterized protein LOC116405043 [Cucumis sativus]9.3e-9272.49Show/hide
Query:  NEANMITVDQRKYKKLKMQIFMGENPVSWVYRAEHFFEINNLPEAEKVKVVVVSFGQDEVDWYRWSHNRKKVESWEDLKGRMFKFFKDTGKKNLVARLIR
        NE N   VD+ KY KL+M +F+GENP SWVYRAEHFFE+NNLPE EK++V VVSFGQ+EVDWYRW+HNRKKVESWEDLKGRMF FFKD+G+ +LVARLIR
Subjt:  NEANMITVDQRKYKKLKMQIFMGENPVSWVYRAEHFFEINNLPEAEKVKVVVVSFGQDEVDWYRWSHNRKKVESWEDLKGRMFKFFKDTGKKNLVARLIR

Query:  IQQDGSYNDYVKKFVNYSAPLPHMAESVPRDEFVTGLKPDLQAEVICRHPQTLEDCMKEAQLVNDRNLALKLAKIEWGLMEQKKREGNSGKNQGG-QKGV
        IQQDGSY++YVKKFV YSAPLPHM ESV RD F+TGL+P+LQAEV+ R+P+TLEDCM+EAQLVNDRN+A+KL KIE   +E KK+E  +GK Q G  KG 
Subjt:  IQQDGSYNDYVKKFVNYSAPLPHMAESVPRDEFVTGLKPDLQAEVICRHPQTLEDCMKEAQLVNDRNLALKLAKIEWGLMEQKKREGNSGKNQGG-QKGV

Query:  QRKTKFPMKQVTIPIRGNYQKSEPPLKRL
         R+T FP+KQVTIPI+G+YQK+EPP+KRL
Subjt:  QRKTKFPMKQVTIPIRGNYQKSEPPLKRL

XP_031745528.1 uncharacterized protein LOC116405915 [Cucumis sativus]2.8e-9675.98Show/hide
Query:  NEANMITVDQRKYKKLKMQIFMGENPVSWVYRAEHFFEINNLPEAEKVKVVVVSFGQDEVDWYRWSHNRKKVESWEDLKGRMFKFFKDTGKKNLVARLIR
        NE N+   D+ KYKKL+M +F+GENP SWVYRAEHFFEINNLPE EKVKV VVSFGQDEVDWYRWSHNR+KVESWEDLK RMF FFKDTG+K+LVARLIR
Subjt:  NEANMITVDQRKYKKLKMQIFMGENPVSWVYRAEHFFEINNLPEAEKVKVVVVSFGQDEVDWYRWSHNRKKVESWEDLKGRMFKFFKDTGKKNLVARLIR

Query:  IQQDGSYNDYVKKFVNYSAPLPHMAESVPRDEFVTGLKPDLQAEVICRHPQTLEDCMKEAQLVNDRNLALKLAKIEWGLMEQKKREGNSGKN-QGGQKGV
        I+QDGSYNDYVKKFVNYSAPLPHM ESV RD F+TGL+P+LQAEV+ R+P TLE+CM+EAQLVNDRNLAL+ +K E G    KK EG++ K  +GG+KG+
Subjt:  IQQDGSYNDYVKKFVNYSAPLPHMAESVPRDEFVTGLKPDLQAEVICRHPQTLEDCMKEAQLVNDRNLALKLAKIEWGLMEQKKREGNSGKN-QGGQKGV

Query:  QRKTKFPMKQVTIPIRGNYQKSEPPLKRL
         RKT+FP+KQVTIPI+GNYQKSEPP+KRL
Subjt:  QRKTKFPMKQVTIPIRGNYQKSEPPLKRL

TrEMBL top hitse value%identityAlignment
A0A5D3BBH7 Ty3/gypsy retrotransposon protein7.7e-9275.23Show/hide
Query:  VDQRKYKKLKMQIFMGENPVSWVYRAEHFFEINNLPEAEKVKVVVVSFGQDEVDWYRWSHNRKKVESWEDLKGRMFKFFKDTGKKNLVARLIRIQQDGSY
        +D+ KYKKL+M +F+GENP SWVYRAEHFFEINNLPEAEKVKV VVSFGQDEVDWYRWSHNR+KVESWEDLK RMF+FF+DTG+K+L ARLIRIQQ+GSY
Subjt:  VDQRKYKKLKMQIFMGENPVSWVYRAEHFFEINNLPEAEKVKVVVVSFGQDEVDWYRWSHNRKKVESWEDLKGRMFKFFKDTGKKNLVARLIRIQQDGSY

Query:  NDYVKKFVNYSAPLPHMAESVPRDEFVTGLKPDLQAEVICRHPQTLEDCMKEAQLVNDRNLALKLAKIEWGLMEQKKREGNSGKNQ-GGQKGVQRKTKFP
        +DYVKKFVNYSAPLPHMAESV RD F+TGL+P LQAEV+ RHPQTLEDCM  AQLVNDRNLALKLA+ E G++E K+ E    K Q   +KG+ RK +F 
Subjt:  NDYVKKFVNYSAPLPHMAESVPRDEFVTGLKPDLQAEVICRHPQTLEDCMKEAQLVNDRNLALKLAKIEWGLMEQKKREGNSGKNQ-GGQKGVQRKTKFP

Query:  MKQVTIPIRGNYQKSEPPLKRL
        MKQ+TIP++G+YQK EPP+KRL
Subjt:  MKQVTIPIRGNYQKSEPPLKRL

A0A5D3BYA1 Ty3/gypsy retrotransposon protein7.7e-9275.23Show/hide
Query:  VDQRKYKKLKMQIFMGENPVSWVYRAEHFFEINNLPEAEKVKVVVVSFGQDEVDWYRWSHNRKKVESWEDLKGRMFKFFKDTGKKNLVARLIRIQQDGSY
        +D+ KYKKL+M +F+GENP SWVYRAEHFFEINNLPEAEKVKV VVSFGQDEVDWYRWSHNR+KVESWEDLK RMF+FF+DTG+K+L ARLIRIQQ+GSY
Subjt:  VDQRKYKKLKMQIFMGENPVSWVYRAEHFFEINNLPEAEKVKVVVVSFGQDEVDWYRWSHNRKKVESWEDLKGRMFKFFKDTGKKNLVARLIRIQQDGSY

Query:  NDYVKKFVNYSAPLPHMAESVPRDEFVTGLKPDLQAEVICRHPQTLEDCMKEAQLVNDRNLALKLAKIEWGLMEQKKREGNSGKNQ-GGQKGVQRKTKFP
        +DYVKKFVNYSAPLPHMAESV RD F+TGL+P LQAEV+ RHPQTLEDCM  AQLVNDRNLALKLA+ E G++E K+ E    K Q   +KG+ RK +F 
Subjt:  NDYVKKFVNYSAPLPHMAESVPRDEFVTGLKPDLQAEVICRHPQTLEDCMKEAQLVNDRNLALKLAKIEWGLMEQKKREGNSGKNQ-GGQKGVQRKTKFP

Query:  MKQVTIPIRGNYQKSEPPLKRL
        MKQ+TIP++G+YQK EPP+KRL
Subjt:  MKQVTIPIRGNYQKSEPPLKRL

A0A5D3CT96 Ty3/gypsy retrotransposon protein7.7e-9275.23Show/hide
Query:  VDQRKYKKLKMQIFMGENPVSWVYRAEHFFEINNLPEAEKVKVVVVSFGQDEVDWYRWSHNRKKVESWEDLKGRMFKFFKDTGKKNLVARLIRIQQDGSY
        +D+ KYKKL+M +F+GENP SWVYRAEHFFEINNLPEAEKVKV VVSFGQDEVDWYRWSHNR+KVESWEDLK RMF+FF+DTG+K+L ARLIRIQQ+GSY
Subjt:  VDQRKYKKLKMQIFMGENPVSWVYRAEHFFEINNLPEAEKVKVVVVSFGQDEVDWYRWSHNRKKVESWEDLKGRMFKFFKDTGKKNLVARLIRIQQDGSY

Query:  NDYVKKFVNYSAPLPHMAESVPRDEFVTGLKPDLQAEVICRHPQTLEDCMKEAQLVNDRNLALKLAKIEWGLMEQKKREGNSGKNQ-GGQKGVQRKTKFP
        +DYVKKFVNYSAPLPHMAESV RD F+TGL+P LQAEV+ RHPQTLEDCM  AQLVNDRNLALKLA+ E G++E K+ E    K Q   +KG+ RK +F 
Subjt:  NDYVKKFVNYSAPLPHMAESVPRDEFVTGLKPDLQAEVICRHPQTLEDCMKEAQLVNDRNLALKLAKIEWGLMEQKKREGNSGKNQ-GGQKGVQRKTKFP

Query:  MKQVTIPIRGNYQKSEPPLKRL
        MKQ+TIP++G+YQK EPP+KRL
Subjt:  MKQVTIPIRGNYQKSEPPLKRL

A0A5D3DU86 Ty3/gypsy retrotransposon protein7.7e-9275.23Show/hide
Query:  VDQRKYKKLKMQIFMGENPVSWVYRAEHFFEINNLPEAEKVKVVVVSFGQDEVDWYRWSHNRKKVESWEDLKGRMFKFFKDTGKKNLVARLIRIQQDGSY
        +D+ KYKKL+M +F+GENP SWVYRAEHFFEINNLPEAEKVKV VVSFGQDEVDWYRWSHNR+KVESWEDLK RMF+FF+DTG+K+L ARLIRIQQ+GSY
Subjt:  VDQRKYKKLKMQIFMGENPVSWVYRAEHFFEINNLPEAEKVKVVVVSFGQDEVDWYRWSHNRKKVESWEDLKGRMFKFFKDTGKKNLVARLIRIQQDGSY

Query:  NDYVKKFVNYSAPLPHMAESVPRDEFVTGLKPDLQAEVICRHPQTLEDCMKEAQLVNDRNLALKLAKIEWGLMEQKKREGNSGKNQ-GGQKGVQRKTKFP
        +DYVKKFVNYSAPLPHMAESV RD F+TGL+P LQAEV+ RHPQTLEDCM  AQLVNDRNLALKLA+ E G++E K+ E    K Q   +KG+ RK +F 
Subjt:  NDYVKKFVNYSAPLPHMAESVPRDEFVTGLKPDLQAEVICRHPQTLEDCMKEAQLVNDRNLALKLAKIEWGLMEQKKREGNSGKNQ-GGQKGVQRKTKFP

Query:  MKQVTIPIRGNYQKSEPPLKRL
        MKQ+TIP++G+YQK EPP+KRL
Subjt:  MKQVTIPIRGNYQKSEPPLKRL

A0A5D3DZK6 Ty3/gypsy retrotransposon protein7.7e-9275.23Show/hide
Query:  VDQRKYKKLKMQIFMGENPVSWVYRAEHFFEINNLPEAEKVKVVVVSFGQDEVDWYRWSHNRKKVESWEDLKGRMFKFFKDTGKKNLVARLIRIQQDGSY
        +D+ KYKKL+M +F+GENP SWVYRAEHFFEINNLPEAEKVKV VVSFGQDEVDWYRWSHNR+KVESWEDLK RMF+FF+DTG+K+L ARLIRIQQ+GSY
Subjt:  VDQRKYKKLKMQIFMGENPVSWVYRAEHFFEINNLPEAEKVKVVVVSFGQDEVDWYRWSHNRKKVESWEDLKGRMFKFFKDTGKKNLVARLIRIQQDGSY

Query:  NDYVKKFVNYSAPLPHMAESVPRDEFVTGLKPDLQAEVICRHPQTLEDCMKEAQLVNDRNLALKLAKIEWGLMEQKKREGNSGKNQ-GGQKGVQRKTKFP
        +DYVKKFVNYSAPLPHMAESV RD F+TGL+P LQAEV+ RHPQTLEDCM  AQLVNDRNLALKLA+ E G++E K+ E    K Q   +KG+ RK +F 
Subjt:  NDYVKKFVNYSAPLPHMAESVPRDEFVTGLKPDLQAEVICRHPQTLEDCMKEAQLVNDRNLALKLAKIEWGLMEQKKREGNSGKNQ-GGQKGVQRKTKFP

Query:  MKQVTIPIRGNYQKSEPPLKRL
        MKQ+TIP++G+YQK EPP+KRL
Subjt:  MKQVTIPIRGNYQKSEPPLKRL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGACTATAAACGAGGCAAACATGATCACAGTAGACCAAAGAAAATACAAAAAATTGAAAATGCAGATTTTTATGGGAGAAAACCCCGTGTCATGGGTCTACAGGGC
AGAACACTTCTTTGAAATCAATAACCTACCAGAAGCAGAAAAGGTCAAGGTTGTTGTAGTAAGTTTTGGACAGGATGAAGTAGACTGGTATAGATGGTCTCATAATAGGA
AGAAAGTTGAATCATGGGAGGACCTTAAAGGAAGGATGTTCAAATTTTTTAAGGACACAGGCAAGAAAAACTTAGTCGCAAGGTTGATCAGAATTCAACAAGATGGCTCA
TACAACGACTACGTGAAGAAGTTCGTTAATTATTCAGCTCCCCTACCTCACATGGCAGAGAGTGTGCCAAGGGATGAGTTTGTAACAGGATTAAAACCAGACCTTCAGGC
CGAAGTTATTTGCAGACATCCGCAAACTTTGGAAGATTGTATGAAAGAAGCCCAGTTGGTCAATGATAGGAATTTGGCATTGAAATTGGCAAAGATAGAGTGGGGATTGA
TGGAACAGAAAAAAAGAGAAGGGAACTCCGGTAAGAATCAAGGAGGACAGAAGGGAGTTCAGAGGAAAACAAAATTTCCAATGAAACAGGTAACTATTCCAATTAGAGGC
AATTACCAAAAGAGTGAACCCCCTTTGAAACGACTATAA
mRNA sequenceShow/hide mRNA sequence
GTCTGGGACTTCGAATGGATCTATCATGAAGCTAAAAGGAAAAATAGAGGATGTGGACTATAAACGAGGCAAACATGATCACAGTAGACCAAAGAAAATACAAAAAATTG
AAAATGCAGATTTTTATGGGAGAAAACCCCGTGTCATGGGTCTACAGGGCAGAACACTTCTTTGAAATCAATAACCTACCAGAAGCAGAAAAGGTCAAGGTTGTTGTAGT
AAGTTTTGGACAGGATGAAGTAGACTGGTATAGATGGTCTCATAATAGGAAGAAAGTTGAATCATGGGAGGACCTTAAAGGAAGGATGTTCAAATTTTTTAAGGACACAG
GCAAGAAAAACTTAGTCGCAAGGTTGATCAGAATTCAACAAGATGGCTCATACAACGACTACGTGAAGAAGTTCGTTAATTATTCAGCTCCCCTACCTCACATGGCAGAG
AGTGTGCCAAGGGATGAGTTTGTAACAGGATTAAAACCAGACCTTCAGGCCGAAGTTATTTGCAGACATCCGCAAACTTTGGAAGATTGTATGAAAGAAGCCCAGTTGGT
CAATGATAGGAATTTGGCATTGAAATTGGCAAAGATAGAGTGGGGATTGATGGAACAGAAAAAAAGAGAAGGGAACTCCGGTAAGAATCAAGGAGGACAGAAGGGAGTTC
AGAGGAAAACAAAATTTCCAATGAAACAGGTAACTATTCCAATTAGAGGCAATTACCAAAAGAGTGAACCCCCTTTGAAACGACTATAAGATGCAGAGTTCCAGGCTCGA
CTTGACAAGGGTATGTGCTTTAAATGTAATGAAAGATATTCGCCAAGAAATAGGTGCAAAATGAAGGAAAAAAAGGAGTTGATGTTGTTCATCCTAAATGAAGA
Protein sequenceShow/hide protein sequence
MWTINEANMITVDQRKYKKLKMQIFMGENPVSWVYRAEHFFEINNLPEAEKVKVVVVSFGQDEVDWYRWSHNRKKVESWEDLKGRMFKFFKDTGKKNLVARLIRIQQDGS
YNDYVKKFVNYSAPLPHMAESVPRDEFVTGLKPDLQAEVICRHPQTLEDCMKEAQLVNDRNLALKLAKIEWGLMEQKKREGNSGKNQGGQKGVQRKTKFPMKQVTIPIRG
NYQKSEPPLKRL