CuGenDBv2

Gene ID	CSPI06G05370
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	classical arabinogalactan protein 25
Genome location	Chr6:4886806..4887475
RNA-Seq Expression	CSPI06G05370
Synteny	CSPI06G05370
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR039346 - Classical arabinogalactan protein 25/26

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6575045.1 hypothetical protein SDJN03_25684, partial [Cucurbita argyrosperma subsp. sororia]

4.0e-41

79.03

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Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL
        MASFWYC+AVIM FMASPLLALPS+PNPK SS FQELSP+IAPLLPS+G  IPSA+G SIPTIPSNPSPPNPD+FEA GPDSSALSP GLPGSFA P SL
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL

Query:  PCYSNWLLLLLNGLALLTFSMHLH
        P YSN  LLLL  L+L  F +HLH
Subjt:  PCYSNWLLLLLNGLALLTFSMHLH

XP_008458497.1 PREDICTED: classical arabinogalactan protein 25 [Cucumis melo]

7.8e-61

99.19

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Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL
        MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL

Query:  PCYSNWLLLLLNGLALLTFSMHLH
        PCYSNWLLLLLNGLALL FSMHLH
Subjt:  PCYSNWLLLLLNGLALLTFSMHLH

XP_011656664.1 classical arabinogalactan protein 25 [Cucumis sativus]

2.1e-61

100

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Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL
        MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL

Query:  PCYSNWLLLLLNGLALLTFSMHLH
        PCYSNWLLLLLNGLALLTFSMHLH
Subjt:  PCYSNWLLLLLNGLALLTFSMHLH

XP_023006472.1 classical arabinogalactan protein 25-like [Cucurbita maxima]

4.0e-41

79.03

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Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL
        MASFWYC+AVIM FMASPLLALPS+PNPK S  FQELSP+IAPLLPSTG  IPSATG SIPTIPSNPSPPNPD+FEA GPDSSALSPFGLPGSFA P  L
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL

Query:  PCYSNWLLLLLNGLALLTFSMHLH
        P YSN   LLL  L+L  F +HLH
Subjt:  PCYSNWLLLLLNGLALLTFSMHLH

XP_023547783.1 classical arabinogalactan protein 25-like [Cucurbita pepo subsp. pepo]

3.1e-41

79.03

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Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL
        MASFWYC+AVIM FMASPLLALPS+PNPK SS FQELSP+IAPLLPS+G  IPSA+G SIPTIPSNPSPPNPD+FEA GPDSSALSPFGLPGSFA P  L
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL

Query:  PCYSNWLLLLLNGLALLTFSMHLH
        P YSN  LLLL  L+L  F +HLH
Subjt:  PCYSNWLLLLLNGLALLTFSMHLH

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KBF8 Uncharacterized protein

9.9e-62

100

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Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL
        MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL

Query:  PCYSNWLLLLLNGLALLTFSMHLH
        PCYSNWLLLLLNGLALLTFSMHLH
Subjt:  PCYSNWLLLLLNGLALLTFSMHLH

A0A1S3C8K2 classical arabinogalactan protein 25

3.8e-61

99.19

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Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL
        MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL

Query:  PCYSNWLLLLLNGLALLTFSMHLH
        PCYSNWLLLLLNGLALL FSMHLH
Subjt:  PCYSNWLLLLLNGLALLTFSMHLH

A0A5A7SSC0 Classical arabinogalactan protein 25

3.8e-61

99.19

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Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL
        MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL

Query:  PCYSNWLLLLLNGLALLTFSMHLH
        PCYSNWLLLLLNGLALL FSMHLH
Subjt:  PCYSNWLLLLLNGLALLTFSMHLH

A0A6J1H4T0 classical arabinogalactan protein 25-like

3.7e-40

77.42

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Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL
        MASFWYC+AVIM  MASPLLALPS+PNPK SS FQELSP+IAPLLPS+G  IPSA+G SIPTIPSNPSPPNPD+FEA GPDSSALSP GLPGSFA P  L
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL

Query:  PCYSNWLLLLLNGLALLTFSMHLH
        P YSN  LLLL  L+L  F +HLH
Subjt:  PCYSNWLLLLLNGLALLTFSMHLH

A0A6J1KVY5 classical arabinogalactan protein 25-like

1.9e-41

79.03

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Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL
        MASFWYC+AVIM FMASPLLALPS+PNPK S  FQELSP+IAPLLPSTG  IPSATG SIPTIPSNPSPPNPD+FEA GPDSSALSPFGLPGSFA P  L
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSL

Query:  PCYSNWLLLLLNGLALLTFSMHLH
        P YSN   LLL  L+L  F +HLH
Subjt:  PCYSNWLLLLLNGLALLTFSMHLH

SwissProt top hits

e value

%identity

Alignment

Q6NN00 Classical arabinogalactan protein 25

8.5e-10

42.86

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Query:  SFWYCSAVIMVFMASPLLALPSVPNPKPS-SPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLP--GSFAPPNS
        +F + + ++++F    +    S+ +  P+ S  Q+LSPEIAPLLPS GD +PS  GS   TIPS+PSPP+PD  +   PD  A SPF  P   S +PP S
Subjt:  SFWYCSAVIMVFMASPLLALPSVPNPKPS-SPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLP--GSFAPPNS

Query:  LPCYSNWLLLLL
        LP     L+ L+
Subjt:  LPCYSNWLLLLL

Arabidopsis top hits

e value

%identity

Alignment

AT5G18690.1 arabinogalactan protein 25

6.0e-11

42.86

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Query:  SFWYCSAVIMVFMASPLLALPSVPNPKPS-SPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLP--GSFAPPNS
        +F + + ++++F    +    S+ +  P+ S  Q+LSPEIAPLLPS GD +PS  GS   TIPS+PSPP+PD  +   PD  A SPF  P   S +PP S
Subjt:  SFWYCSAVIMVFMASPLLALPSVPNPKPS-SPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLP--GSFAPPNS

Query:  LPCYSNWLLLLL
        LP     L+ L+
Subjt:  LPCYSNWLLLLL

Sequences

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CDS sequence

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ATGGCCTCCTTTTGGTATTGTTCAGCAGTCATTATGGTTTTCATGGCCTCACCATTGCTTGCTTTACCATCTGTACCCAATCCAAAACCCAGCTCGCCTTTTCAAGAACT
CTCCCCTGAAATTGCTCCATTATTGCCTTCTACTGGTGATAAGATTCCCTCTGCAACTGGTTCTTCTATTCCCACCATTCCTTCCAACCCCAGCCCTCCAAATCCAGATG
ACTTCGAAGCTCTTGGCCCTGATTCCTCTGCCCTTTCGCCATTTGGCCTCCCAGGTTCCTTTGCACCTCCTAATTCCTTGCCTTGCTATTCAAATTGGCTTCTTCTTCTT
CTCAATGGCTTAGCACTACTTACCTTCTCTATGCACTTACATTGA

mRNA sequence

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CCATTCTCCCATTTCAAAGGTCCCACGTCATAATTTCAACAAAAGTCACCAAAGCCATCTCCCCGGCAGCGTAGTGAAGCCAAGGGTTATTATTATTATTATTTTTTTAA
TCTTTTTAATAACACAATAAAATAATAATAACAACAACAACAATAGCTCTCCTTGGATTTTCACAAATATATTAGGCTACACACCCTCCAGTGATTTCATCATCATTAGA
ATGGCCTCCTTTTGGTATTGTTCAGCAGTCATTATGGTTTTCATGGCCTCACCATTGCTTGCTTTACCATCTGTACCCAATCCAAAACCCAGCTCGCCTTTTCAAGAACT
CTCCCCTGAAATTGCTCCATTATTGCCTTCTACTGGTGATAAGATTCCCTCTGCAACTGGTTCTTCTATTCCCACCATTCCTTCCAACCCCAGCCCTCCAAATCCAGATG
ACTTCGAAGCTCTTGGCCCTGATTCCTCTGCCCTTTCGCCATTTGGCCTCCCAGGTTCCTTTGCACCTCCTAATTCCTTGCCTTGCTATTCAAATTGGCTTCTTCTTCTT
CTCAATGGCTTAGCACTACTTACCTTCTCTATGCACTTACATTGATTCTGGAAACATCTTTCTGCATAAAGGAGTTCCAATTCTACTTGTACTTGATTCATCACATCCCA
GAATGTCCCC

Protein sequence

Show/hide protein sequence

MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSLPCYSNWLLLL
LNGLALLTFSMHLH

CSPI06G05370 (gene) of Cucumber (PI 183967) v1 genome