; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI06G05520 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G05520
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRibosomal RNA adenine dimethylase family protein
Genome locationChr6:5025533..5030065
RNA-Seq ExpressionCSPI06G05520
SyntenyCSPI06G05520
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6574778.1 hypothetical protein SDJN03_25417, partial [Cucurbita argyrosperma subsp. sororia]8.0e-7283.62Show/hide
Query:  MEAMADGTAPPSLSDLLLSLDQATFMAKQLPSTSNPTHLLQIYNSLHQANLNLSLFLSTTHLPQSLPLPPPSINETSLSSATSAAF-----DPMQVGDDD
        ME MA+G A PSL DL+LSL+QA+FMAKQL STSNP HLLQIYNSLHQANLNLS+FLST H PQSLPLPPPSIN+  LSSATSAAF     +PMQVGDD+
Subjt:  MEAMADGTAPPSLSDLLLSLDQATFMAKQLPSTSNPTHLLQIYNSLHQANLNLSLFLSTTHLPQSLPLPPPSINETSLSSATSAAF-----DPMQVGDDD

Query:  DADAHQNSKGTIEMVEEKMKDCFIKNKRVKRQLSPSAAAMAEERRVHPHNRFTATPKGFDPHVERLRALDLISQFHA
        DADA QNSKGTIEMVEEKMKDCFIKNKRVKR+LSPSAAAMAEERRVH  NRF+AT KGFDPHVERLRALDLISQFHA
Subjt:  DADAHQNSKGTIEMVEEKMKDCFIKNKRVKRQLSPSAAAMAEERRVHPHNRFTATPKGFDPHVERLRALDLISQFHA

XP_008460165.1 PREDICTED: uncharacterized protein LOC103499058 [Cucumis melo]1.1e-8698.26Show/hide
Query:  MEAMADGTAPPSLSDLLLSLDQATFMAKQLPSTSNPTHLLQIYNSLHQANLNLSLFLSTTHLPQSLPLPPPSINETSLSSATSAAFDPMQVGDDDDADAH
        ME MA+GTAPPSLSDLL SLDQATFMAKQLPSTSNPTHLLQIYNSLHQANLNLSLFLSTTHLPQSLPLPPPSINETSLSSATSAAFDPMQVGDDDDADAH
Subjt:  MEAMADGTAPPSLSDLLLSLDQATFMAKQLPSTSNPTHLLQIYNSLHQANLNLSLFLSTTHLPQSLPLPPPSINETSLSSATSAAFDPMQVGDDDDADAH

Query:  QNSKGTIEMVEEKMKDCFIKNKRVKRQLSPSAAAMAEERRVHPHNRFTATPKGFDPHVERLRALDLISQFHA
        QNSKGTIEMVEEKMKDCFIKNKRVKRQLSPSAAAMAEERRVHPHNRFTATPKGFDPHVERLRALDLISQFHA
Subjt:  QNSKGTIEMVEEKMKDCFIKNKRVKRQLSPSAAAMAEERRVHPHNRFTATPKGFDPHVERLRALDLISQFHA

XP_011656677.1 uncharacterized protein LOC105435764 [Cucumis sativus]8.8e-8797.73Show/hide
Query:  MEAMADGTAPPSLSDLLLSLDQATFMAKQLPSTSNPTHLLQIYNSLHQANLNLSLFLSTTHLPQS----LPLPPPSINETSLSSATSAAFDPMQVGDDDD
        MEAMADGTAPPSLSDLLLSLDQATFMAKQLPSTSNPTHLLQIYNSLHQANLNLSLFLSTTHLPQS    LPLPPPSINETSLSSATSAAFDPMQVGDDDD
Subjt:  MEAMADGTAPPSLSDLLLSLDQATFMAKQLPSTSNPTHLLQIYNSLHQANLNLSLFLSTTHLPQS----LPLPPPSINETSLSSATSAAFDPMQVGDDDD

Query:  ADAHQNSKGTIEMVEEKMKDCFIKNKRVKRQLSPSAAAMAEERRVHPHNRFTATPKGFDPHVERLRALDLISQFHA
        ADAHQNSKGTIEMVEEKMKDCFIKNKRVKRQLSPSAAAMAEERRVHPHNRFTATPKGFDPHVERLRALDLISQFHA
Subjt:  ADAHQNSKGTIEMVEEKMKDCFIKNKRVKRQLSPSAAAMAEERRVHPHNRFTATPKGFDPHVERLRALDLISQFHA

XP_023548054.1 uncharacterized protein LOC111806806 [Cucurbita pepo subsp. pepo]7.5e-7081.22Show/hide
Query:  MEAMADGTAPPSLSDLLLSLDQATFMAKQLPSTSNPTHLLQIYNSLHQANLNLSLFLSTTHLPQSLPLPPPSINETSLSSATSAAF-----DPMQVGDDD
        ME MA+G A PSL DL+LSL+QA+FMAKQL STSNP HLLQIYNSLHQANLNLS+FLST H PQSLP+PPPSIN+  LSSATSAAF     +PMQVGDD+
Subjt:  MEAMADGTAPPSLSDLLLSLDQATFMAKQLPSTSNPTHLLQIYNSLHQANLNLSLFLSTTHLPQSLPLPPPSINETSLSSATSAAF-----DPMQVGDDD

Query:  ----DADAHQNSKGTIEMVEEKMKDCFIKNKRVKRQLSPSAAAMAEERRVHPHNRFTATPKGFDPHVERLRALDLISQFHA
            DADA QNSKGTIEMVEEKMKDCFIKNKRVKR+LSPSAAAMAEERRVH  NRF+AT KGFDPHVERLRALDLISQFHA
Subjt:  ----DADAHQNSKGTIEMVEEKMKDCFIKNKRVKRQLSPSAAAMAEERRVHPHNRFTATPKGFDPHVERLRALDLISQFHA

XP_038876419.1 uncharacterized protein LOC120068853 [Benincasa hispida]1.2e-7287.01Show/hide
Query:  MEAMADGTAPPSLSDLLLSLDQATFMAKQLPSTSNPTHLLQIYNSLHQANLNLSLFLSTTHLPQSLPLPPPSINETSLSSATSAAF-----DPMQVGDDD
        MEAMA+G A PSLSDLLLSL+QA+FMAKQLPS+SNPTHLLQIYNSLHQANLNLSLFLS T   QSLPLP PSINE SLSSATSAAF     +PMQVGDDD
Subjt:  MEAMADGTAPPSLSDLLLSLDQATFMAKQLPSTSNPTHLLQIYNSLHQANLNLSLFLSTTHLPQSLPLPPPSINETSLSSATSAAF-----DPMQVGDDD

Query:  DADAHQNSKGTIEMVEEKMKDCFIKNKRVKRQLSPSAAAMAEERRVHPHNRFTATPKGFDPHVERLRALDLISQFHA
        DADA  +SKGTIEMVEEKMKDCFIKNKRVKRQLSPSAAAMAEERRVH  NRFTATPKGFDPHVERLRALDLISQFHA
Subjt:  DADAHQNSKGTIEMVEEKMKDCFIKNKRVKRQLSPSAAAMAEERRVHPHNRFTATPKGFDPHVERLRALDLISQFHA

TrEMBL top hitse value%identityAlignment
A0A0A0KBH1 Uncharacterized protein4.2e-8797.73Show/hide
Query:  MEAMADGTAPPSLSDLLLSLDQATFMAKQLPSTSNPTHLLQIYNSLHQANLNLSLFLSTTHLPQS----LPLPPPSINETSLSSATSAAFDPMQVGDDDD
        MEAMADGTAPPSLSDLLLSLDQATFMAKQLPSTSNPTHLLQIYNSLHQANLNLSLFLSTTHLPQS    LPLPPPSINETSLSSATSAAFDPMQVGDDDD
Subjt:  MEAMADGTAPPSLSDLLLSLDQATFMAKQLPSTSNPTHLLQIYNSLHQANLNLSLFLSTTHLPQS----LPLPPPSINETSLSSATSAAFDPMQVGDDDD

Query:  ADAHQNSKGTIEMVEEKMKDCFIKNKRVKRQLSPSAAAMAEERRVHPHNRFTATPKGFDPHVERLRALDLISQFHA
        ADAHQNSKGTIEMVEEKMKDCFIKNKRVKRQLSPSAAAMAEERRVHPHNRFTATPKGFDPHVERLRALDLISQFHA
Subjt:  ADAHQNSKGTIEMVEEKMKDCFIKNKRVKRQLSPSAAAMAEERRVHPHNRFTATPKGFDPHVERLRALDLISQFHA

A0A1S3CC06 uncharacterized protein LOC1034990585.5e-8798.26Show/hide
Query:  MEAMADGTAPPSLSDLLLSLDQATFMAKQLPSTSNPTHLLQIYNSLHQANLNLSLFLSTTHLPQSLPLPPPSINETSLSSATSAAFDPMQVGDDDDADAH
        ME MA+GTAPPSLSDLL SLDQATFMAKQLPSTSNPTHLLQIYNSLHQANLNLSLFLSTTHLPQSLPLPPPSINETSLSSATSAAFDPMQVGDDDDADAH
Subjt:  MEAMADGTAPPSLSDLLLSLDQATFMAKQLPSTSNPTHLLQIYNSLHQANLNLSLFLSTTHLPQSLPLPPPSINETSLSSATSAAFDPMQVGDDDDADAH

Query:  QNSKGTIEMVEEKMKDCFIKNKRVKRQLSPSAAAMAEERRVHPHNRFTATPKGFDPHVERLRALDLISQFHA
        QNSKGTIEMVEEKMKDCFIKNKRVKRQLSPSAAAMAEERRVHPHNRFTATPKGFDPHVERLRALDLISQFHA
Subjt:  QNSKGTIEMVEEKMKDCFIKNKRVKRQLSPSAAAMAEERRVHPHNRFTATPKGFDPHVERLRALDLISQFHA

A0A2N9JB98 Uncharacterized protein1.7e-4364.37Show/hide
Query:  MEAMADGTAPPSLSDLLLSLDQATFMAKQLPSTSNPTHLLQIYNSLHQANLNLSLFLSTTHLPQSLPLPP--PSINETSLSSATSAA-FDPMQVGDDDDA
        ME MAD  APP L +L+LSL+QAT MAKQLP+T++PTHL QIY SLHQA+ +LS FLSTT   Q  P PP  P   E SLSSAT  A  DPMQV DDD  
Subjt:  MEAMADGTAPPSLSDLLLSLDQATFMAKQLPSTSNPTHLLQIYNSLHQANLNLSLFLSTTHLPQSLPLPP--PSINETSLSSATSAA-FDPMQVGDDDDA

Query:  DAHQNSKGTIEMVEEKMKDCFIKNKRVKRQLSPSAAAMAEERRVHPHNRFTATPKGFDPHVERLRALDLISQFH
        +A +NSKGTI+ VEEKM+DCFIKNKR KR LSPSA A+ EERR++  + F    KGFDPH  RLRALDL+ QFH
Subjt:  DAHQNSKGTIEMVEEKMKDCFIKNKRVKRQLSPSAAAMAEERRVHPHNRFTATPKGFDPHVERLRALDLISQFH

A0A5D3DLF5 Putative AP2-like ethylene-responsive transcription factor SNZ5.5e-8798.26Show/hide
Query:  MEAMADGTAPPSLSDLLLSLDQATFMAKQLPSTSNPTHLLQIYNSLHQANLNLSLFLSTTHLPQSLPLPPPSINETSLSSATSAAFDPMQVGDDDDADAH
        ME MA+GTAPPSLSDLL SLDQATFMAKQLPSTSNPTHLLQIYNSLHQANLNLSLFLSTTHLPQSLPLPPPSINETSLSSATSAAFDPMQVGDDDDADAH
Subjt:  MEAMADGTAPPSLSDLLLSLDQATFMAKQLPSTSNPTHLLQIYNSLHQANLNLSLFLSTTHLPQSLPLPPPSINETSLSSATSAAFDPMQVGDDDDADAH

Query:  QNSKGTIEMVEEKMKDCFIKNKRVKRQLSPSAAAMAEERRVHPHNRFTATPKGFDPHVERLRALDLISQFHA
        QNSKGTIEMVEEKMKDCFIKNKRVKRQLSPSAAAMAEERRVHPHNRFTATPKGFDPHVERLRALDLISQFHA
Subjt:  QNSKGTIEMVEEKMKDCFIKNKRVKRQLSPSAAAMAEERRVHPHNRFTATPKGFDPHVERLRALDLISQFHA

A0A6J1DSG3 uncharacterized protein LOC1110230958.6e-6479.1Show/hide
Query:  MEAMADGTAPPSLSDLLLSLDQATFMAKQLPSTSNPTHLLQIYNSLHQANLNLSLFLSTTHLPQSLPLPPPSINETSLSSATSAAF-----DPMQVGDDD
        MEAMA+G A PSL DL+LSL+QA+FMAKQLPSTSNP+HLLQIYNSLHQAN NLS+FLS T  PQSLPLP PS+NE SLSSATSAAF     +PMQVGDD+
Subjt:  MEAMADGTAPPSLSDLLLSLDQATFMAKQLPSTSNPTHLLQIYNSLHQANLNLSLFLSTTHLPQSLPLPPPSINETSLSSATSAAF-----DPMQVGDDD

Query:  DADAHQNSKGTIEMVEEKMKDCFIKNKRVKRQLSPSAAAMAEERRVHPHNRFTATPKGFDPHVERLRALDLISQFHA
             QNSKG+IEMVEEKMKDCFIKNKRVKRQLSPS AAMAEERR+H  +RF AT KGFDP VERLRALDLISQFHA
Subjt:  DADAHQNSKGTIEMVEEKMKDCFIKNKRVKRQLSPSAAAMAEERRVHPHNRFTATPKGFDPHVERLRALDLISQFHA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G01840.1 unknown protein3.7e-1941.57Show/hide
Query:  LSDLLLSLDQATFMAKQLPSTSNPTHLLQIYNSLHQANLNLSLFLSTTHLPQSLPLPPPSINETSLSSATSAAFDPMQVGDDDDAD---AHQNSKGTIEM
        +++L+ SL+QAT MA+Q+ +T     LLQI +SL  A+  LS FL++          P +  E S SS      +PMQ+G+++  +   A +     IE 
Subjt:  LSDLLLSLDQATFMAKQLPSTSNPTHLLQIYNSLHQANLNLSLFLSTTHLPQSLPLPPPSINETSLSSATSAAFDPMQVGDDDDAD---AHQNSKGTIEM

Query:  VEEKMKDCFIKNKRVKRQLSPSAAAM---AEERRVHPHNRFTATPKGFDPHVERLRALDLISQFHA
        VEEKM++CFI+NKR+KR LSPS+A +   A E R      F +     DPH  +LRALDLI QFHA
Subjt:  VEEKMKDCFIKNKRVKRQLSPSAAAM---AEERRVHPHNRFTATPKGFDPHVERLRALDLISQFHA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCCATGGCAGACGGAACAGCACCACCTTCATTGTCCGATCTTTTACTATCTCTAGACCAAGCAACCTTCATGGCTAAGCAGCTTCCTTCTACCTCTAATCCAAC
CCACCTCCTCCAAATCTATAATTCTCTTCACCAAGCAAACCTCAACCTCTCCCTCTTCCTTTCTACAACTCACCTTCCCCAATCTCTTCCTCTTCCTCCTCCTTCCATCA
ACGAAACTTCCCTCTCCTCCGCAACCAGCGCCGCCTTCGACCCGATGCAGGTCGGCGACGACGATGATGCCGACGCCCACCAGAATTCCAAGGGTACGATTGAAATGGTT
GAGGAGAAGATGAAGGATTGTTTTATTAAGAACAAGCGGGTTAAGCGTCAGCTATCTCCCTCCGCAGCGGCTATGGCCGAGGAAAGACGAGTGCATCCTCATAATCGCTT
TACTGCCACGCCCAAGGGTTTCGATCCTCATGTAGAGAGATTGCGGGCCTTGGACCTTATTTCCCAGTTTCATGCGTGA
mRNA sequenceShow/hide mRNA sequence
ACGCAATCGTAGATTTTAATATTCATTACTCATCTTCTACCTGCCTTTCCTTCTGCAATTCATTGCCCATTAATAAATAGTGGAAGGAGAAAGATGGAAGCCATGGCAGA
CGGAACAGCACCACCTTCATTGTCCGATCTTTTACTATCTCTAGACCAAGCAACCTTCATGGCTAAGCAGCTTCCTTCTACCTCTAATCCAACCCACCTCCTCCAAATCT
ATAATTCTCTTCACCAAGCAAACCTCAACCTCTCCCTCTTCCTTTCTACAACTCACCTTCCCCAATCTCTTCCTCTTCCTCCTCCTTCCATCAACGAAACTTCCCTCTCC
TCCGCAACCAGCGCCGCCTTCGACCCGATGCAGGTCGGCGACGACGATGATGCCGACGCCCACCAGAATTCCAAGGGTACGATTGAAATGGTTGAGGAGAAGATGAAGGA
TTGTTTTATTAAGAACAAGCGGGTTAAGCGTCAGCTATCTCCCTCCGCAGCGGCTATGGCCGAGGAAAGACGAGTGCATCCTCATAATCGCTTTACTGCCACGCCCAAGG
GTTTCGATCCTCATGTAGAGAGATTGCGGGCCTTGGACCTTATTTCCCAGTTTCATGCGTGAGCCATAGACGTTGCTTAGTTTGAAAATTGAGATGGAAGAATTTACTCG
CATTCTGGGGAACCGAATCCCCATAAGAAGGCGCATGGCATCTCTATGCCAATATCAAGGCTGAAGAGTAATGTAACGAGGGTCTTTGTGTTGTTTAAGGGTTCTTGCCA
GTTTCTTTGCGATTTAGATTACCACCCAGAGGTCTGAGCAGTATTGGTGCGGATGGGGCTTGACCATGCCTTCGTCAAGTCTTAACATGTTATTAGTTTTGTGCTATTTC
TCTTTCCCTATGGCATGATAAAAGGATTGCTTTGTTGAAGAGACAACATCAAAGCTGATCTCTTTCTGCGCACAGAAATCAGTAGGGGTGTTGGAGCACGATCTGCTGCT
ACACAGAGGCTGAGGTTGACATCTCTGTTCTGTTTTATTTGTGTAACTGTATTGCATATTCGAGTATCGGGGTCTCACTCACTGTATCATGCTCATAGCCCACTCCACTG
ATCTCCAAAGATATTCACTCACTCCAAAATCAGTTTTAGGGGACTACAAAGATTTTAATTTATTAATGATTCCGTTAAGTTTTTCTTCTTCCAGTAGTCTTGATTGCTTC
CTTTGATTAATGCAATACATTTCTTGATATAGACACTACTTTTTAATAAGTTTCCCTT
Protein sequenceShow/hide protein sequence
MEAMADGTAPPSLSDLLLSLDQATFMAKQLPSTSNPTHLLQIYNSLHQANLNLSLFLSTTHLPQSLPLPPPSINETSLSSATSAAFDPMQVGDDDDADAHQNSKGTIEMV
EEKMKDCFIKNKRVKRQLSPSAAAMAEERRVHPHNRFTATPKGFDPHVERLRALDLISQFHA