CuGenDBv2

Gene ID	CSPI06G05690
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Genome location	Chr6:5112228..5113100
RNA-Seq Expression	CSPI06G05690
Synteny	CSPI06G05690
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0039770.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

3.9e-61

57.35

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Query:  QAASRLNFNLSKSTISPINVDNCRTD----------VYLPIPHLGVPLGGKPSSASFWENITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSI
        Q AS L+ NL+KSTISPINVD  RT+           +LPI +LGVPLGGK  + +FW+N+  KI+KKL + K+S +SKGGK+TLIKS+L SLPTYQLSI
Subjt:  QAASRLNFNLSKSTISPINVDNCRTD----------VYLPIPHLGVPLGGKPSSASFWENITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSI

Query:  FKAPVGICKKIEKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITAKYNKSFIGELPAYGKYSSSK
        FKAPV  CK IEK WR+FLWKN  E    HL+ W+K+T   EKGGLGI ++ DTNF+ L KWLWR+  E  PLWKKII AKY     G++P    +SSS+
Subjt:  FKAPVGICKKIEKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITAKYNKSFIGELPAYGKYSSSK

Query:  APWRNIIKGVE
        +PW +I KG+E
Subjt:  APWRNIIKGVE

KAA0040037.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

7.8e-62

57.35

Show/hide

Query:  QAASRLNFNLSKSTISPINVDNCRTD----------VYLPIPHLGVPLGGKPSSASFWENITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSI
        Q AS L+ NL+KSTISPINVD  RT+           +LPI +LGVPLGGK  + +FW+N+  KI+KKL + K+S +SKGGK+TLIKS+L SLPTYQLSI
Subjt:  QAASRLNFNLSKSTISPINVDNCRTD----------VYLPIPHLGVPLGGKPSSASFWENITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSI

Query:  FKAPVGICKKIEKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITAKYNKSFIGELPAYGKYSSSK
        FKAPV  CK IEK WR+FLWKN  E    HL+ W+K+T P E+GGLGI ++ DTNF+ L KWLWR+  E  PLWKKII AKY     G++P    +SSS+
Subjt:  FKAPVGICKKIEKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITAKYNKSFIGELPAYGKYSSSK

Query:  APWRNIIKGVE
        +PW +I KG+E
Subjt:  APWRNIIKGVE

KAA0041367.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.6e-62

57.82

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Query:  QAASRLNFNLSKSTISPINVDNCRTD----------VYLPIPHLGVPLGGKPSSASFWENITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSI
        Q AS L+ NL+KSTISPINVD  RT+           +LPI +LGVPLGGK ++ +FW+N+  KI+KKL + K+S +SKGGK+TLIKS+L SLPTYQLSI
Subjt:  QAASRLNFNLSKSTISPINVDNCRTD----------VYLPIPHLGVPLGGKPSSASFWENITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSI

Query:  FKAPVGICKKIEKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITAKYNKSFIGELPAYGKYSSSK
        FKAPV  CK IEK WR+FLWKN  E    HL+ W+K+T P E+GGLGI ++ DTNF+ L KWLWR+  E  PLWKKII AKY     G++P    +SSS+
Subjt:  FKAPVGICKKIEKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITAKYNKSFIGELPAYGKYSSSK

Query:  APWRNIIKGVE
        +PW +I KGVE
Subjt:  APWRNIIKGVE

TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.7e-61

57.35

Show/hide

Query:  QAASRLNFNLSKSTISPINVDNCRTD----------VYLPIPHLGVPLGGKPSSASFWENITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSI
        Q AS L+ NL+KSTISPINVD  RT+           +LPI +LGVPLGGK ++ +FW+N+  KI+KKL + K+S +SKGGK+TLIKS+L SLPTYQLSI
Subjt:  QAASRLNFNLSKSTISPINVDNCRTD----------VYLPIPHLGVPLGGKPSSASFWENITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSI

Query:  FKAPVGICKKIEKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITAKYNKSFIGELPAYGKYSSSK
        FKAPV  CK IEK WR+FLWKN  E    HL+ W+K+T   EKGGLGI ++ DTNF+ L KWLWR+  E  PLWKKII AKY     G++P    +SSS+
Subjt:  FKAPVGICKKIEKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITAKYNKSFIGELPAYGKYSSSK

Query:  APWRNIIKGVE
        +PW +I KG+E
Subjt:  APWRNIIKGVE

XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]

1.1e-60

56.87

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Query:  QAASRLNFNLSKSTISPINVDNCRTD----------VYLPIPHLGVPLGGKPSSASFWENITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSI
        Q AS L+ NL+KSTISPINVD  RT+           +LPI +LGVPLGGK  + +FW+N+  KI+KKL + K+S +SKGGK+TLIKS+L SLPTYQLSI
Subjt:  QAASRLNFNLSKSTISPINVDNCRTD----------VYLPIPHLGVPLGGKPSSASFWENITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSI

Query:  FKAPVGICKKIEKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITAKYNKSFIGELPAYGKYSSSK
        FK PV  CK IEK WR+FLWKN  E    HL+ W+K+T   EKGGLGI ++ DTNF+ L KWLWR+  E  PLWKKII AKY     G++P    +SSS+
Subjt:  FKAPVGICKKIEKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITAKYNKSFIGELPAYGKYSSSK

Query:  APWRNIIKGVE
        +PW +I KG+E
Subjt:  APWRNIIKGVE

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E2K5 LINE-1 retrotransposable element ORF2 protein

5.5e-61

56.87

Show/hide

Query:  QAASRLNFNLSKSTISPINVDNCRTD----------VYLPIPHLGVPLGGKPSSASFWENITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSI
        Q AS L+ NL+KSTISPINVD  RT+           +LPI +LGVPLGGK  + +FW+N+  KI+KKL + K+S +SKGGK+TLIKS+L SLPTYQLSI
Subjt:  QAASRLNFNLSKSTISPINVDNCRTD----------VYLPIPHLGVPLGGKPSSASFWENITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSI

Query:  FKAPVGICKKIEKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITAKYNKSFIGELPAYGKYSSSK
        FK PV  CK IEK WR+FLWKN  E    HL+ W+K+T   EKGGLGI ++ DTNF+ L KWLWR+  E  PLWKKII AKY     G++P    +SSS+
Subjt:  FKAPVGICKKIEKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITAKYNKSFIGELPAYGKYSSSK

Query:  APWRNIIKGVE
        +PW +I KG+E
Subjt:  APWRNIIKGVE

A0A5A7TES3 LINE-1 retrotransposable element ORF2 protein

3.8e-62

57.35

Show/hide

Query:  QAASRLNFNLSKSTISPINVDNCRTD----------VYLPIPHLGVPLGGKPSSASFWENITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSI
        Q AS L+ NL+KSTISPINVD  RT+           +LPI +LGVPLGGK  + +FW+N+  KI+KKL + K+S +SKGGK+TLIKS+L SLPTYQLSI
Subjt:  QAASRLNFNLSKSTISPINVDNCRTD----------VYLPIPHLGVPLGGKPSSASFWENITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSI

Query:  FKAPVGICKKIEKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITAKYNKSFIGELPAYGKYSSSK
        FKAPV  CK IEK WR+FLWKN  E    HL+ W+K+T P E+GGLGI ++ DTNF+ L KWLWR+  E  PLWKKII AKY     G++P    +SSS+
Subjt:  FKAPVGICKKIEKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITAKYNKSFIGELPAYGKYSSSK

Query:  APWRNIIKGVE
        +PW +I KG+E
Subjt:  APWRNIIKGVE

A0A5A7TI93 LINE-1 retrotransposable element ORF2 protein

7.6e-63

57.82

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Query:  QAASRLNFNLSKSTISPINVDNCRTD----------VYLPIPHLGVPLGGKPSSASFWENITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSI
        Q AS L+ NL+KSTISPINVD  RT+           +LPI +LGVPLGGK ++ +FW+N+  KI+KKL + K+S +SKGGK+TLIKS+L SLPTYQLSI
Subjt:  QAASRLNFNLSKSTISPINVDNCRTD----------VYLPIPHLGVPLGGKPSSASFWENITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSI

Query:  FKAPVGICKKIEKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITAKYNKSFIGELPAYGKYSSSK
        FKAPV  CK IEK WR+FLWKN  E    HL+ W+K+T P E+GGLGI ++ DTNF+ L KWLWR+  E  PLWKKII AKY     G++P    +SSS+
Subjt:  FKAPVGICKKIEKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITAKYNKSFIGELPAYGKYSSSK

Query:  APWRNIIKGVE
        +PW +I KGVE
Subjt:  APWRNIIKGVE

A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein

8.4e-62

57.35

Show/hide

Query:  QAASRLNFNLSKSTISPINVDNCRTD----------VYLPIPHLGVPLGGKPSSASFWENITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSI
        Q AS L+ NL+KSTISPINVD  RT+           +LPI +LGVPLGGK ++ +FW+N+  KI+KKL + K+S +SKGGK+TLIKS+L SLPTYQLSI
Subjt:  QAASRLNFNLSKSTISPINVDNCRTD----------VYLPIPHLGVPLGGKPSSASFWENITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSI

Query:  FKAPVGICKKIEKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITAKYNKSFIGELPAYGKYSSSK
        FKAPV  CK IEK WR+FLWKN  E    HL+ W+K+T   EKGGLGI ++ DTNF+ L KWLWR+  E  PLWKKII AKY     G++P    +SSS+
Subjt:  FKAPVGICKKIEKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITAKYNKSFIGELPAYGKYSSSK

Query:  APWRNIIKGVE
        +PW +I KG+E
Subjt:  APWRNIIKGVE

A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein

1.9e-61

57.35

Show/hide

Query:  QAASRLNFNLSKSTISPINVDNCRTD----------VYLPIPHLGVPLGGKPSSASFWENITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSI
        Q AS L+ NL+KSTISPINVD  RT+           +LPI +LGVPLGGK  + +FW+N+  KI+KKL + K+S +SKGGK+TLIKS+L SLPTYQLSI
Subjt:  QAASRLNFNLSKSTISPINVDNCRTD----------VYLPIPHLGVPLGGKPSSASFWENITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSI

Query:  FKAPVGICKKIEKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITAKYNKSFIGELPAYGKYSSSK
        FKAPV  CK IEK WR+FLWKN  E    HL+ W+K+T   EKGGLGI ++ DTNF+ L KWLWR+  E  PLWKKII AKY     G++P    +SSS+
Subjt:  FKAPVGICKKIEKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITAKYNKSFIGELPAYGKYSSSK

Query:  APWRNIIKGVE
        +PW +I KG+E
Subjt:  APWRNIIKGVE

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

3.9e-16

29.17

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Query:  VPLGGKPSSASFWENITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSIFKAPVGICKKIEKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGG
        +P+  K  +   +  I  ++  +++  +   +S  G++TL K+ L S+P + +S    P  I  ++++  R FLW +  E K  HL++WSKV  P ++GG
Subjt:  VPLGGKPSSASFWENITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSIFKAPVGICKKIEKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGG

Query:  LGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITAKYNKSFIGE---LPAYGKYSSSKAPWRNIIKGV
        LG+      N + + K  WR   E   LW  ++  KY+   I +   L   G +SS+   WR+I  G+
Subjt:  LGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITAKYNKSFIGE---LPAYGKYSSSKAPWRNIIKGV

Arabidopsis top hits

e value

%identity

Alignment

AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

2.7e-12

27.94

Show/hide

Query:  LPIPHLGVPLGGKPSSASFWENITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSIFKAPVGICKKIEKYWRDFLWKNKNEDKLTHLLRWSKVT
        LP+ +LG+PL  K  + S +  +  KI  ++      ++S  G++ LI S + SL  + +S F+ P    K+I+     FLW     +     + WS V 
Subjt:  LPIPHLGVPLGGKPSSASFWENITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSIFKAPVGICKKIEKYWRDFLWKNKNEDKLTHLLRWSKVT

Query:  LPIEKGGLGIHKITDTN---------FSFLCKWLWR
         P ++GGLGI  + + N          + L  W+W+
Subjt:  LPIEKGGLGIHKITDTN---------FSFLCKWLWR

AT4G29090.1 Ribonuclease H-like superfamily protein

1.5e-10

32.61

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Query:  ISLPTYQLSIFKAPVGICKKIEKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITAKY
        ++LPTY ++ F  P  +CK+I     DF W+NK E K  H   W  ++    +GG+G   I   N + L K +WR  +    L  K+  ++Y
Subjt:  ISLPTYQLSIFKAPVGICKKIEKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITAKY

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGATTATTTCAACAGGTTGATTCTACATGTTCAACAACAAGCGGCATCTCGTCTGAATTTCAATCTATCAAAGTCCACCATATCTCCCATAAATGTCGACAACTGCAG
AACTGATGTTTATCTTCCAATTCCTCACCTTGGAGTTCCGTTAGGAGGAAAGCCATCTTCAGCATCATTTTGGGAGAATATCACAGCAAAAATTCATAAGAAATTGAACA
ACCGGAAATTCTCTTATATCTCAAAAGGGGGGAAAATGACTCTCATTAAATCCACTCTAATCAGTTTGCCCACATATCAACTATCGATATTTAAAGCTCCAGTTGGCATC
TGTAAAAAAATTGAAAAATATTGGAGAGATTTCTTATGGAAGAACAAAAATGAAGACAAGCTTACCCACCTCCTTAGATGGTCCAAAGTCACTCTTCCTATTGAAAAAGG
TGGTCTTGGTATACATAAAATAACAGATACCAACTTTTCCTTCTTATGCAAATGGCTCTGGAGATTCCATACTGAAGCATATCCCCTCTGGAAAAAAATTATTACTGCTA
AATATAATAAGTCCTTCATTGGAGAGCTGCCTGCATATGGAAAATATAGTTCTTCGAAAGCTCCTTGGAGAAATATTATCAAAGGTGTCGAATGCTCAGATCAAATGGAC
GGTAAACAATGGCGAAAATCTCTCCTTTTGGAAATGAATTTGGTATGA

mRNA sequence

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Protein sequence

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MDYFNRLILHVQQQAASRLNFNLSKSTISPINVDNCRTDVYLPIPHLGVPLGGKPSSASFWENITAKIHKKLNNRKFSYISKGGKMTLIKSTLISLPTYQLSIFKAPVGI
CKKIEKYWRDFLWKNKNEDKLTHLLRWSKVTLPIEKGGLGIHKITDTNFSFLCKWLWRFHTEAYPLWKKIITAKYNKSFIGELPAYGKYSSSKAPWRNIIKGVECSDQMD
GKQWRKSLLLEMNLV

CSPI06G05690 (gene) of Cucumber (PI 183967) v1 genome