CuGenDBv2

Gene ID	CSPI06G06200
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3
Genome location	Chr6:5453941..5454536
RNA-Seq Expression	CSPI06G06200
Synteny	CSPI06G06200
Gene Ontology terms	GO:0032981 - mitochondrial respiratory chain complex I assembly (biological process) GO:0005634 - nucleus (cellular component) GO:0005743 - mitochondrial inner membrane (cellular component)
InterPro domains	IPR007523 - NDUFAF3/Mth938 domain-containing protein IPR036748 - MTH938-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8637205.1 hypothetical protein CSA_004607 [Cucumis sativus]

1.4e-54

79.59

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Query:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQ-----------------------------RYTETGFTVNGVD
        MAAR KAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQ                             RYTETGFTVNGVD
Subjt:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQ-----------------------------RYTETGFTVNGVD

Query:  YEGSLLCVGNLLMSWTPKKFSEITSDRFALHFLFLTYNTQFTSFVLF
        YEGSLLCVGNLLMSWTPKKFSEITSDRFALHFLFLTYNTQFTSFVLF
Subjt:  YEGSLLCVGNLLMSWTPKKFSEITSDRFALHFLFLTYNTQFTSFVLF

XP_031737544.1 uncharacterized protein LOC116402433 [Cucumis sativus]

1.4e-46

94.95

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Query:  RRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSDRFALHFLFLTYNTQFTSFVLFGD
        RRKPGFSQP   + RAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSDRFALHFLFLTYNTQFTSFVLFGD
Subjt:  RRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSDRFALHFLFLTYNTQFTSFVLFGD

XP_031742645.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like [Cucumis sativus]

7.3e-48

96.04

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Query:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSDRFA
        MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSD  +
Subjt:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSDRFA

Query:  L
        +
Subjt:  L

XP_031743290.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like [Cucumis sativus]

7.3e-48

96.04

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Query:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSDRFA
        MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSD  +
Subjt:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSDRFA

Query:  L
        +
Subjt:  L

XP_031745505.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like [Cucumis sativus]

2.8e-47

95.05

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Query:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSDRFA
        MAAR KAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSD  +
Subjt:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSDRFA

Query:  L
        +
Subjt:  L

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CB84 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3

4.3e-46

92.08

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Query:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSDRFA
        MAARQKAVATLP+LIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVP+DQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSW+PKKFSEIT D  +
Subjt:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSDRFA

Query:  L
        +
Subjt:  L

A0A5A7TES8 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3

4.3e-46

92.08

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Query:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSDRFA
        MAARQKAVATLP+LIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVP+DQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSW+PKKFSEIT D  +
Subjt:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSDRFA

Query:  L
        +
Subjt:  L

A0A5D3DLM8 NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex assembly factor 3-like

4.3e-46

92.08

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Query:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSDRFA
        MAARQKAVATLP+LIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVP+DQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSW+PKKFSEIT D  +
Subjt:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSDRFA

Query:  L
        +
Subjt:  L

A0A6J1DND7 LOW QUALITY PROTEIN: uncharacterized protein LOC111022818

5.3e-44

85.19

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Query:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSDRFA
        MAARQKAVATLPNLIR+L+ DRR+PG SQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSW+P+KFSEIT++   
Subjt:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSDRFA

Query:  LHFLFLTY
           LFLT+
Subjt:  LHFLFLTY

A0A6J1HIQ3 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3

1.5e-43

86.14

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Query:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSDRFA
        MAARQKAVATLPNLIR+++ DRR+PG SQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNG+DYEGSLLCVGNLLMSW+PKKFSEIT +  +
Subjt:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSDRFA

Query:  L
        +
Subjt:  L

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G44525.1 Protein of unknown function (DUF498/DUF598)

1.7e-34

69.61

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Query:  MAARQKAVATLPNLIRTLKNDRRKPGFSQP-LPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSDRF
        MA R K++ATLP LI++++  +  P  S P LPSLRRAFSLYDQINLIDNVPEDQLRFQ + +T FTVNGV YEGSLLCVGNLLMSW+P+KFSEIT+D  
Subjt:  MAARQKAVATLPNLIRTLKNDRRKPGFSQP-LPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSDRF

Query:  AL
        ++
Subjt:  AL

AT3G60150.1 Protein of unknown function (DUF498/DUF598)

2.0e-35

71.29

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Query:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSDRFA
        MA RQKA+ATLP LI++++N+  K   S  LPSLRRAFSLYDQINLIDNVPEDQLRFQ + ET FTVNGV YEGSLLCVGNLLMSW+P+ FS+IT+D  +
Subjt:  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSDRFA

Query:  L
        +
Subjt:  L

Sequences

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CDS sequence

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ATGGCGGCAAGGCAGAAAGCGGTGGCGACGCTGCCTAATCTAATTAGAACCCTTAAAAATGATCGCCGGAAGCCTGGTTTCAGCCAGCCTCTTCCGTCGTTGAGACGTGC
CTTTTCACTTTACGATCAGATCAATCTCATCGACAATGTCCCTGAAGATCAGCTTCGTTTTCAACGGTATACTGAGACGGGGTTCACTGTGAATGGAGTGGATTATGAGG
GCAGCTTGCTTTGTGTTGGGAATTTGTTGATGTCTTGGACTCCTAAGAAATTTTCGGAAATTACGTCTGATAGGTTTGCTTTGCATTTCTTGTTCCTAACTTACAATACT
CAATTTACTTCCTTTGTTCTTTTTGGTGATTGA

mRNA sequence

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TGAAAAATGCAATTATATCAAAGTTGATGTCCTAAAGAAGAAAAGTAAAAGAGAAAAAGGGATTTGGGGGCGAAACTCCGGGACGGGGACAGAGGGCCTGAGAAAAATGG
CGGCAAGGCAGAAAGCGGTGGCGACGCTGCCTAATCTAATTAGAACCCTTAAAAATGATCGCCGGAAGCCTGGTTTCAGCCAGCCTCTTCCGTCGTTGAGACGTGCCTTT
TCACTTTACGATCAGATCAATCTCATCGACAATGTCCCTGAAGATCAGCTTCGTTTTCAACGGTATACTGAGACGGGGTTCACTGTGAATGGAGTGGATTATGAGGGCAG
CTTGCTTTGTGTTGGGAATTTGTTGATGTCTTGGACTCCTAAGAAATTTTCGGAAATTACGTCTGATAGGTTTGCTTTGCATTTCTTGTTCCTAACTTACAATACTCAAT
TTACTTCCTTTGTTCTTTTTGGTGATTGAAAATGAATGAAATGATGGAAGTTCACGTGGGTGTTCAAAC

Protein sequence

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MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSDRFALHFLFLTYNT
QFTSFVLFGD

CSPI06G06200 (gene) of Cucumber (PI 183967) v1 genome