CuGenDBv2

Gene ID	CSPI06G06670
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	trigger factor-like isoform X3
Genome location	Chr6:5754773..5757613
RNA-Seq Expression	CSPI06G06670
Synteny	CSPI06G06670
Gene Ontology terms	GO:0000413 - protein peptidyl-prolyl isomerization (biological process) GO:0015031 - protein transport (biological process) GO:0043335 - protein unfolding (biological process) GO:0051083 - 'de novo' cotranslational protein folding (biological process) GO:0061077 - chaperone-mediated protein folding (biological process) GO:0003755 - peptidyl-prolyl cis-trans isomerase activity (molecular function) GO:0043022 - ribosome binding (molecular function) GO:0044183 - protein folding chaperone (molecular function)
InterPro domains	IPR005215 - Trigger factor IPR008881 - Trigger factor, ribosome-binding, bacterial IPR036611 - Trigger factor ribosome-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004140596.1 uncharacterized protein LOC101211587 isoform X2 [Cucumis sativus]

5.1e-105

97.61

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Query:  MQIAAANFFLSVNPKAIYHKQTTDYLTPNLTCISVSFPSQIRYGSRKISLSTNNRYLPAACAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSG
        MQIAAANFFLSVNPKAIYHKQTTDY TPNLTCI VSFPSQIRYGSRKISLS NNRYLPAACAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSG
Subjt:  MQIAAANFFLSVNPKAIYHKQTTDYLTPNLTCISVSFPSQIRYGSRKISLSTNNRYLPAACAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSG

Query:  AKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDENFFFD
        AKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEK EALKVGKDLRIDQSYEDLEDQFEPDENFFFD
Subjt:  AKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDENFFFD

Query:  AIIELKESN
        AII+LKESN
Subjt:  AIIELKESN

XP_008460016.1 PREDICTED: trigger factor-like isoform X1 [Cucumis melo]

3.4e-101

92.49

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Query:  MQIAAANFFLSVNPKAIYHKQTTDYLTPNLTCISVSFPSQIRYGSRKISLSTNNRYLPAACAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSG
        MQIAAANFFLS NPKA+YHKQTTDY TPNLTC SVSFPSQI+YGS KISLS NNRYLPAACAVLSEN SVSSSQFEDFSVTNVTNT ENKELKIRVEVSG
Subjt:  MQIAAANFFLSVNPKAIYHKQTTDYLTPNLTCISVSFPSQIRYGSRKISLSTNNRYLPAACAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSG

Query:  AKTRAIFNVVFDRMVAEAQPIPGFRRVKGG----KTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDEN
         KTRAIFNVVFDRMVAEAQPIPGFRRVKGG    KTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDE 
Subjt:  AKTRAIFNVVFDRMVAEAQPIPGFRRVKGG----KTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDEN

Query:  FFFDAIIELKESN
        FFFDAII+LKESN
Subjt:  FFFDAIIELKESN

XP_008460018.1 PREDICTED: trigger factor-like isoform X3 [Cucumis melo]

6.2e-103

94.26

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Query:  MQIAAANFFLSVNPKAIYHKQTTDYLTPNLTCISVSFPSQIRYGSRKISLSTNNRYLPAACAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSG
        MQIAAANFFLS NPKA+YHKQTTDY TPNLTC SVSFPSQI+YGS KISLS NNRYLPAACAVLSEN SVSSSQFEDFSVTNVTNT ENKELKIRVEVSG
Subjt:  MQIAAANFFLSVNPKAIYHKQTTDYLTPNLTCISVSFPSQIRYGSRKISLSTNNRYLPAACAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSG

Query:  AKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDENFFFD
         KTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDE FFFD
Subjt:  AKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDENFFFD

Query:  AIIELKESN
        AII+LKESN
Subjt:  AIIELKESN

XP_008460019.1 PREDICTED: trigger factor-like isoform X4 [Cucumis melo]

5.8e-101

93.78

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Query:  MQIAAANFFLSVNPKAIYHKQTTDYLTPNLTCISVSFPSQIRYGSRKISLSTNNRYLPAACAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSG
        MQIAAANFFLS NPKA+YHKQTTDY TPNLTC SVSFPSQI+YGS KISLS NNRYLPAACAVLSEN SVSSSQFEDFSVTNVTNT ENKELKIRVEVSG
Subjt:  MQIAAANFFLSVNPKAIYHKQTTDYLTPNLTCISVSFPSQIRYGSRKISLSTNNRYLPAACAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSG

Query:  AKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDENFFFD
         KTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEK EALKVGKDLRIDQSYEDLEDQFEPDE FFFD
Subjt:  AKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDENFFFD

Query:  AIIELKESN
        AII+LKESN
Subjt:  AIIELKESN

XP_011656735.1 uncharacterized protein LOC101211587 isoform X1 [Cucumis sativus]

5.4e-107

98.09

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Query:  MQIAAANFFLSVNPKAIYHKQTTDYLTPNLTCISVSFPSQIRYGSRKISLSTNNRYLPAACAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSG
        MQIAAANFFLSVNPKAIYHKQTTDY TPNLTCI VSFPSQIRYGSRKISLS NNRYLPAACAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSG
Subjt:  MQIAAANFFLSVNPKAIYHKQTTDYLTPNLTCISVSFPSQIRYGSRKISLSTNNRYLPAACAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSG

Query:  AKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDENFFFD
        AKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDENFFFD
Subjt:  AKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDENFFFD

Query:  AIIELKESN
        AII+LKESN
Subjt:  AIIELKESN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KBW0 Trigger_N domain-containing protein

2.5e-105

97.61

Show/hide

Query:  MQIAAANFFLSVNPKAIYHKQTTDYLTPNLTCISVSFPSQIRYGSRKISLSTNNRYLPAACAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSG
        MQIAAANFFLSVNPKAIYHKQTTDY TPNLTCI VSFPSQIRYGSRKISLS NNRYLPAACAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSG
Subjt:  MQIAAANFFLSVNPKAIYHKQTTDYLTPNLTCISVSFPSQIRYGSRKISLSTNNRYLPAACAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSG

Query:  AKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDENFFFD
        AKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEK EALKVGKDLRIDQSYEDLEDQFEPDENFFFD
Subjt:  AKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDENFFFD

Query:  AIIELKESN
        AII+LKESN
Subjt:  AIIELKESN

A0A1S3CB34 trigger factor-like isoform X4

2.8e-101

93.78

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Query:  MQIAAANFFLSVNPKAIYHKQTTDYLTPNLTCISVSFPSQIRYGSRKISLSTNNRYLPAACAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSG
        MQIAAANFFLS NPKA+YHKQTTDY TPNLTC SVSFPSQI+YGS KISLS NNRYLPAACAVLSEN SVSSSQFEDFSVTNVTNT ENKELKIRVEVSG
Subjt:  MQIAAANFFLSVNPKAIYHKQTTDYLTPNLTCISVSFPSQIRYGSRKISLSTNNRYLPAACAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSG

Query:  AKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDENFFFD
         KTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEK EALKVGKDLRIDQSYEDLEDQFEPDE FFFD
Subjt:  AKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDENFFFD

Query:  AIIELKESN
        AII+LKESN
Subjt:  AIIELKESN

A0A1S3CBJ8 trigger factor-like isoform X1

1.7e-101

92.49

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Query:  MQIAAANFFLSVNPKAIYHKQTTDYLTPNLTCISVSFPSQIRYGSRKISLSTNNRYLPAACAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSG
        MQIAAANFFLS NPKA+YHKQTTDY TPNLTC SVSFPSQI+YGS KISLS NNRYLPAACAVLSEN SVSSSQFEDFSVTNVTNT ENKELKIRVEVSG
Subjt:  MQIAAANFFLSVNPKAIYHKQTTDYLTPNLTCISVSFPSQIRYGSRKISLSTNNRYLPAACAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSG

Query:  AKTRAIFNVVFDRMVAEAQPIPGFRRVKGG----KTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDEN
         KTRAIFNVVFDRMVAEAQPIPGFRRVKGG    KTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDE 
Subjt:  AKTRAIFNVVFDRMVAEAQPIPGFRRVKGG----KTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDEN

Query:  FFFDAIIELKESN
        FFFDAII+LKESN
Subjt:  FFFDAIIELKESN

A0A1S3CCS7 trigger factor-like isoform X3

3.0e-103

94.26

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Query:  MQIAAANFFLSVNPKAIYHKQTTDYLTPNLTCISVSFPSQIRYGSRKISLSTNNRYLPAACAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSG
        MQIAAANFFLS NPKA+YHKQTTDY TPNLTC SVSFPSQI+YGS KISLS NNRYLPAACAVLSEN SVSSSQFEDFSVTNVTNT ENKELKIRVEVSG
Subjt:  MQIAAANFFLSVNPKAIYHKQTTDYLTPNLTCISVSFPSQIRYGSRKISLSTNNRYLPAACAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSG

Query:  AKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDENFFFD
         KTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDE FFFD
Subjt:  AKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDENFFFD

Query:  AIIELKESN
        AII+LKESN
Subjt:  AIIELKESN

A0A5D3DLR6 Trigger factor-like isoform X3

3.0e-103

94.26

Show/hide

Query:  MQIAAANFFLSVNPKAIYHKQTTDYLTPNLTCISVSFPSQIRYGSRKISLSTNNRYLPAACAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSG
        MQIAAANFFLS NPKA+YHKQTTDY TPNLTC SVSFPSQI+YGS KISLS NNRYLPAACAVLSEN SVSSSQFEDFSVTNVTNT ENKELKIRVEVSG
Subjt:  MQIAAANFFLSVNPKAIYHKQTTDYLTPNLTCISVSFPSQIRYGSRKISLSTNNRYLPAACAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSG

Query:  AKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDENFFFD
         KTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDE FFFD
Subjt:  AKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDENFFFD

Query:  AIIELKESN
        AII+LKESN
Subjt:  AIIELKESN

SwissProt top hits

e value

%identity

Alignment

B1XL18 Trigger factor

5.3e-04

24.35

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Query:  ELKIRVEVSGAKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQ
        ++ + +EV    T+  ++    R +A    +PGFR+ K      +P+ IL++ LGP+++   V++++I+ ++ A +  QE ++   + ++  S++DL   
Subjt:  ELKIRVEVSGAKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQ

Query:  FEPDENFFFDAIIEL
        ++P E   F A +++
Subjt:  FEPDENFFFDAIIEL

Arabidopsis top hits

e value

%identity

Alignment

AT2G30695.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 253 Blast hits to 253 proteins in 72 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).

4.5e-43

57.93

Show/hide

Query:  RKISLSTNNRYLPAACAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILG
        +K+     NR   A CA  S+    +SS+ E   +T V  T+ + E+K+ V+VSG KT+ +FN VF++MVA AQPIPGFRRVKGGKTPNIP+D+LLEILG
Subjt:  RKISLSTNNRYLPAACAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILG

Query:  PSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDENFFFDAIIELKESN
         SKVYKQVIK++INS +  YV KQE LKVGK+L + QSYEDLE+ FEP E+F FDA I+L+E++
Subjt:  PSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDENFFFDAIIELKESN

AT2G30695.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

4.5e-43

57.93

Show/hide

Query:  RKISLSTNNRYLPAACAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILG
        +K+     NR   A CA  S+    +SS+ E   +T V  T+ + E+K+ V+VSG KT+ +FN VF++MVA AQPIPGFRRVKGGKTPNIP+D+LLEILG
Subjt:  RKISLSTNNRYLPAACAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILG

Query:  PSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDENFFFDAIIELKESN
         SKVYKQVIK++INS +  YV KQE LKVGK+L + QSYEDLE+ FEP E+F FDA I+L+E++
Subjt:  PSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDENFFFDAIIELKESN

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCAAATTGCTGCTGCCAACTTCTTTCTTTCTGTAAATCCCAAGGCTATATATCATAAGCAGACAACGGATTACCTTACTCCAAACCTCACTTGCATAAGTGTATCTTT
TCCCAGTCAAATTAGATATGGTAGCAGGAAAATTTCCTTGAGTACAAATAACAGATATCTTCCAGCTGCTTGTGCTGTGTTATCAGAAAATGTGAGTGTTTCATCTTCTC
AGTTTGAAGACTTCTCCGTCACTAATGTTACCAATACAAAGGAGAATAAAGAACTAAAGATTCGTGTTGAGGTGTCAGGAGCCAAAACTCGAGCAATTTTCAATGTCGTG
TTTGACAGAATGGTAGCTGAAGCCCAACCTATTCCAGGTTTTAGAAGAGTGAAAGGAGGAAAGACGCCAAATATACCCCGAGACATTCTATTAGAGATACTGGGACCTTC
TAAGGTGTACAAACAAGTTATTAAGGAAGTTATCAACTCTACTGTTGCTGCCTATGTGGAAAAGCAGGAAGCTCTAAAAGTGGGTAAAGACTTGAGAATAGATCAAAGCT
ATGAGGATCTTGAAGACCAATTTGAACCAGATGAAAATTTCTTCTTTGATGCCATTATTGAGCTTAAGGAATCAAACTGA

mRNA sequence

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Protein sequence

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MQIAAANFFLSVNPKAIYHKQTTDYLTPNLTCISVSFPSQIRYGSRKISLSTNNRYLPAACAVLSENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVV
FDRMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKQEALKVGKDLRIDQSYEDLEDQFEPDENFFFDAIIELKESN

CSPI06G06670 (gene) of Cucumber (PI 183967) v1 genome