; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI06G06700 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G06700
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionselenoprotein F-like
Genome locationChr6:5772736..5776148
RNA-Seq ExpressionCSPI06G06700
SyntenyCSPI06G06700
Gene Ontology termsGO:0005788 - endoplasmic reticulum lumen (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0016491 - oxidoreductase activity (molecular function)
InterPro domainsIPR014912 - Selenoprotein F/M domain
IPR036249 - Thioredoxin-like superfamily
IPR038219 - Selenoprotein F/M, thioredoxin-like domain superfamily
IPR039992 - Selenoprotein F/M


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039920.1 15 kDa selenoprotein [Cucumis melo var. makuwa]1.9e-8690.66Show/hide
Query:  MQLLPGVWNSAIAVTVALTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQ-----------ELVSDCLKCCAEDSDDATSKIT
        MQLLPGVWN A AVTVAL ATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQ           ELV+DCLKCCAEDSDDATSKIT
Subjt:  MQLLPGVWNSAIAVTVALTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQ-----------ELVSDCLKCCAEDSDDATSKIT

Query:  YSGAVLEVCMRKLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI
        YSGAVLEVCMRKLVFYPEIVGFIE+DKDQFPSVKVQYTFNSPPKLILLDD+GQHKESIRIDNWKREHFLQFLQEKVKRSSAI
Subjt:  YSGAVLEVCMRKLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI

XP_004140597.1 selenoprotein F [Cucumis sativus]1.5e-9199.42Show/hide
Query:  MQLLPGVWNSAIAVTVALTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMR
        MQLLPGVWNSAIAVTVALTATAIIFISSMPL WSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMR
Subjt:  MQLLPGVWNSAIAVTVALTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMR

Query:  KLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI
        KLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI
Subjt:  KLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI

XP_008460012.1 PREDICTED: 15 kDa selenoprotein [Cucumis melo]6.0e-8895.32Show/hide
Query:  MQLLPGVWNSAIAVTVALTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMR
        MQLLPGVWN A AVTV L A AIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELV+DCLKCCAEDSDDATSKITYSGAVLEVCMR
Subjt:  MQLLPGVWNSAIAVTVALTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMR

Query:  KLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI
        KLVFYPEIVGFIE+DKDQFPSVKVQYTFNSPPKLILLDD+GQHKESIRIDNWKREHFLQFLQEKVKRSSAI
Subjt:  KLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI

XP_022954272.1 selenoprotein F-like [Cucurbita moschata]2.5e-7888.37Show/hide
Query:  MQLLPGVWNSAIAVTVALTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMR
        MQLL GV N A  VT+   ATAIIFI+SMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELV+DCLKCC EDSDDATSKITYSGA+LEVCMR
Subjt:  MQLLPGVWNSAIAVTVALTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMR

Query:  KLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVK-RSSAI
        KLVFYPEIVGFIE++KDQFPSV VQYTFNSPPKLILLDD+GQHKESIRIDNWKREH LQFL+EKVK RSSAI
Subjt:  KLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVK-RSSAI

XP_038875398.1 selenoprotein F [Benincasa hispida]2.0e-8390.64Show/hide
Query:  MQLLPGVWNSAIAVTVALTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMR
        MQLLPGV N A AVT+A+ AT +IFI+SMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELV+DCLKCC EDSDDATSKITYSGAVLEVCMR
Subjt:  MQLLPGVWNSAIAVTVALTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMR

Query:  KLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI
        KLVFYPEIVGFIE++KDQFPSVKVQY FNSPPKLILLDD+GQHKESIRIDNWKREH LQFLQEKVKRSSAI
Subjt:  KLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI

TrEMBL top hitse value%identityAlignment
A0A0A0KA30 Sep15_SelM domain-containing protein7.4e-9299.42Show/hide
Query:  MQLLPGVWNSAIAVTVALTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMR
        MQLLPGVWNSAIAVTVALTATAIIFISSMPL WSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMR
Subjt:  MQLLPGVWNSAIAVTVALTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMR

Query:  KLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI
        KLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI
Subjt:  KLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI

A0A1S3CC00 15 kDa selenoprotein2.9e-8895.32Show/hide
Query:  MQLLPGVWNSAIAVTVALTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMR
        MQLLPGVWN A AVTV L A AIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELV+DCLKCCAEDSDDATSKITYSGAVLEVCMR
Subjt:  MQLLPGVWNSAIAVTVALTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMR

Query:  KLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI
        KLVFYPEIVGFIE+DKDQFPSVKVQYTFNSPPKLILLDD+GQHKESIRIDNWKREHFLQFLQEKVKRSSAI
Subjt:  KLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI

A0A5A7T9G4 15 kDa selenoprotein9.4e-8790.66Show/hide
Query:  MQLLPGVWNSAIAVTVALTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQ-----------ELVSDCLKCCAEDSDDATSKIT
        MQLLPGVWN A AVTVAL ATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQ           ELV+DCLKCCAEDSDDATSKIT
Subjt:  MQLLPGVWNSAIAVTVALTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQ-----------ELVSDCLKCCAEDSDDATSKIT

Query:  YSGAVLEVCMRKLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI
        YSGAVLEVCMRKLVFYPEIVGFIE+DKDQFPSVKVQYTFNSPPKLILLDD+GQHKESIRIDNWKREHFLQFLQEKVKRSSAI
Subjt:  YSGAVLEVCMRKLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI

A0A6J1GQK6 selenoprotein F-like1.2e-7888.37Show/hide
Query:  MQLLPGVWNSAIAVTVALTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMR
        MQLL GV N A  VT+   ATAIIFI+SMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELV+DCLKCC EDSDDATSKITYSGA+LEVCMR
Subjt:  MQLLPGVWNSAIAVTVALTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMR

Query:  KLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVK-RSSAI
        KLVFYPEIVGFIE++KDQFPSV VQYTFNSPPKLILLDD+GQHKESIRIDNWKREH LQFL+EKVK RSSAI
Subjt:  KLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVK-RSSAI

A0A6J1JXH9 selenoprotein F-like1.4e-7787.79Show/hide
Query:  MQLLPGVWNSAIAVTVALTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMR
        MQLL GV N A  VT+   ATAIIFI+SMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELV+DCLKCC EDSDDATSKITYSGA+LEVCMR
Subjt:  MQLLPGVWNSAIAVTVALTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMR

Query:  KLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVK-RSSAI
        KLVFYPEIVGFIE++K QFPSV VQYTFNSPPKLILLDD+GQHKESIRIDNWKREH LQFL+EKVK RSSAI
Subjt:  KLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVK-RSSAI

SwissProt top hitse value%identityAlignment
A1Z623 Selenoprotein F2.1e-1935.37Show/hide
Query:  PGVWNSAIAVTVALTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVF
        PG W         L ATA+  +S+        + SS  C +LGF+   LC  C  L ++   Q L  DC  CC E++   T K+ Y+GA+LEVC  KL  
Subjt:  PGVWNSAIAVTVALTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVF

Query:  YPEIVGFIEDDKDQ-FPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKR
        +P++  F+  DK + F  ++++Y   S P L LLDD G   E + I  W  +   +FL EK++R
Subjt:  YPEIVGFIEDDKDQ-FPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKR

A8YXY3 Selenoprotein F3.6e-1937.88Show/hide
Query:  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQ-FPSVKVQYTFNSPPKLI
        + SS  C +LGF+   LCS C  L ++    +L  DC  CC E++   T K+ Y+GA+LEVC  KL  +P++  F+  DK + F  ++++Y   S P L 
Subjt:  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQ-FPSVKVQYTFNSPPKLI

Query:  LLDDKGQHKESIRIDNWKREHFLQFLQEKVKR
        LLDD G   E + I  W  +   +FL EK++R
Subjt:  LLDDKGQHKESIRIDNWKREHFLQFLQEKVKR

O60613 Selenoprotein F6.2e-1937.88Show/hide
Query:  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQ-FPSVKVQYTFNSPPKLI
        + SS  C +LGF+   LCS C  L ++    +L  DC  CC E++   T K+ Y+GA+LEVC  KL  +P++  F+  DK + F  ++++Y   S P L 
Subjt:  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQ-FPSVKVQYTFNSPPKLI

Query:  LLDDKGQHKESIRIDNWKREHFLQFLQEKVKR
        LLDD G   E + I  W  +   +FL EK++R
Subjt:  LLDDKGQHKESIRIDNWKREHFLQFLQEKVKR

Q802F3 Selenoprotein F1.4e-1837.88Show/hide
Query:  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQ-FPSVKVQYTFNSPPKLI
        +LSS  C +LGF+   LCS C  L ++  +Q L   C +CC E++     K+ Y GA+LEVC  KL  +P++  F+  DK + F  ++++Y   S P L 
Subjt:  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQ-FPSVKVQYTFNSPPKLI

Query:  LLDDKGQHKESIRIDNWKREHFLQFLQEKVKR
        LLDD G   E + I  W  +   +FL EK++R
Subjt:  LLDDKGQHKESIRIDNWKREHFLQFLQEKVKR

Q923V8 Selenoprotein F2.0e-1735.76Show/hide
Query:  LTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKD
        L ATA   +S++       + SS  C +LGF+   LCS C  L ++     L   C  CC E++   T K+ Y+GA+LEVC  KL  +P++  F+  DK 
Subjt:  LTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKD

Query:  Q-FPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKR
        + F  ++++Y   S P L LLDD G   E + I  W  +   +FL EK++R
Subjt:  Q-FPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKR

Arabidopsis top hitse value%identityAlignment
AT1G05720.1 selenoprotein family protein1.2e-6572.33Show/hide
Query:  IAVTVALTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGF
        +A  V L+A  I+ ++S   A  KEQLS++ECEDLGF+GLALCSDCH+L+EY+KDQELVSDCLKCCA+DS+D+ SK+TYSGA+LEVCMRKLVFYPEIVGF
Subjt:  IAVTVALTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGF

Query:  IEDDKDQFPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSA
        IE++K++FPSVKVQY FNSPPKLI+LD+ G+HKESIRIDNWKREH LQ+++EKVK ++A
Subjt:  IEDDKDQFPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGCTTCTCCCCGGAGTATGGAATTCCGCTATCGCGGTGACGGTAGCGTTAACTGCGACGGCGATCATTTTCATCTCGTCAATGCCGTTGGCTTGGTCAAAGGAGCA
ACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACCGGCCTTGCTCTCTGTTCTGATTGTCACACTTTAGCTGAATATATCAAAGATCAAGAATTAGTGTCGGACTGTT
TAAAGTGTTGTGCCGAGGATTCTGATGATGCCACGAGTAAGATAACTTATTCTGGTGCCGTGCTGGAGGTCTGCATGAGAAAGCTAGTTTTCTATCCTGAAATTGTTGGC
TTCATTGAAGACGATAAGGATCAATTCCCTTCAGTTAAGGTTCAATATACCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATAAGGGCCAGCATAAAGAAAGCAT
CAGGATTGATAATTGGAAACGAGAACATTTTTTGCAATTCCTGCAAGAGAAGGTTAAGCGATCTTCAGCAATTTAA
mRNA sequenceShow/hide mRNA sequence
GAAGTTAAAAATTCGTCTTTTGTCGAGAGAGAGAGTTTTCCAATCGTCCGTAGGCTTCGCCTTTTCACCCTCAGTCGCCGGCGACAACAGAGATGCAGCTTCTCCCCGGA
GTATGGAATTCCGCTATCGCGGTGACGGTAGCGTTAACTGCGACGGCGATCATTTTCATCTCGTCAATGCCGTTGGCTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATG
TGAGGATCTAGGTTTCACCGGCCTTGCTCTCTGTTCTGATTGTCACACTTTAGCTGAATATATCAAAGATCAAGAATTAGTGTCGGACTGTTTAAAGTGTTGTGCCGAGG
ATTCTGATGATGCCACGAGTAAGATAACTTATTCTGGTGCCGTGCTGGAGGTCTGCATGAGAAAGCTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGACGATAAG
GATCAATTCCCTTCAGTTAAGGTTCAATATACCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATAAGGGCCAGCATAAAGAAAGCATCAGGATTGATAATTGGAA
ACGAGAACATTTTTTGCAATTCCTGCAAGAGAAGGTTAAGCGATCTTCAGCAATTTAAGGTTCTCTCACCTTTTTCTTTTTTTTTTTTTAATTTTAAATTTTAGGTTACA
TCTCTTAATCAATGTAAAAAACTTGTTGAATTTGAATGAAACTATTATCAGCCAGAAAAAGAAGAAAGAAAGAAAAAGAATTGAGGTGAGTGAACACTGGATTTTGTGAA
TTTCAAGGTTAGCAGTGGAAATAGTTCTGATTTCCTTTTGTCTAAATCTTTTACTGGAGGAAGACACACCTTTCATCCGGTAAACCAATACATTTTGAACGTAATGGAAT
GAATTTGTCGTATAACGTAATTCTAGATCTATGTTTGGACTGACCGTCCTGGAACCAATTTGCAATACCAAACTTATTATGTTTTCATGACTGGCCGTCCTGGAACCAAT
TTGCAATA
Protein sequenceShow/hide protein sequence
MQLLPGVWNSAIAVTVALTATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVG
FIEDDKDQFPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI