CuGenDBv2

Gene ID	CSPI06G07220
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	U2 small nuclear ribonucleoprotein A'
Genome location	Chr6:6169490..6174418
RNA-Seq Expression	CSPI06G07220
Synteny	CSPI06G07220
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:0005737 - cytoplasm (cellular component) GO:0015030 - Cajal body (cellular component) GO:0005515 - protein binding (molecular function) GO:0030620 - U2 snRNA binding (molecular function)
InterPro domains	IPR001611 - Leucine-rich repeat IPR003603 - U2A'/phosphoprotein 32 family A, C-terminal IPR032675 - Leucine-rich repeat domain superfamily IPR044640 - U2 small nuclear ribonucleoprotein A'

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004140564.3 U2 small nuclear ribonucleoprotein A' [Cucumis sativus]

1.7e-143

99.64

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEASNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS
        VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEA NLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEASNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE

XP_008459932.1 PREDICTED: U2 small nuclear ribonucleoprotein A' [Cucumis melo]

2.2e-140

98.21

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEASNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS
        VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEA NLFSSKEVEEEAKKESVKTFV GEVEKASKPVEEKQTPNVS
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEASNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTA NITKDKDDKT S SGDEEHVTNDESTPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE

XP_022960458.1 U2 small nuclear ribonucleoprotein A' [Cucurbita moschata]

1.0e-132

91.96

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEASNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS
        VNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKL+S+RVLDFKKVRNKERLEA NLFSSKEVEEEAKKESVKTFVPGEVE ASKPVEEKQT  +S
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEASNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHV-------TNDESTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNT  N TKD DDKTMSD GDEE+V       +NDESTPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHV-------TNDESTPMEQE

XP_023005060.1 U2 small nuclear ribonucleoprotein A' [Cucurbita maxima]

2.9e-132

91.61

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEASNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS
        VNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKL+S+RVLDFKKVRNKERLEA NLFSSKEVEEEAKKESVKTFVPGEVE ASKPVEEKQT  +S
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEASNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHV-------TNDESTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNT  N TKD DDKT+SD GDEE+V       +NDESTPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHV-------TNDESTPMEQE

XP_038907085.1 U2 small nuclear ribonucleoprotein A' [Benincasa hispida]

8.5e-132

91.96

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEASNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS
        VNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEA NLFSSKEVEEEAKKESVK FVPGEVE ASKPVEEKQT NVS
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEASNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHV-------TNDESTPMEQE
        APT EQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLL+DNT  N TK+ DDKTMSDSGDEE+V       +NDE TPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHV-------TNDESTPMEQE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CAU7 U2 small nuclear ribonucleoprotein A'

1.1e-140

98.21

Show/hide

Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEASNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS
        VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEA NLFSSKEVEEEAKKESVKTFV GEVEKASKPVEEKQTPNVS
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEASNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTA NITKDKDDKT S SGDEEHVTNDESTPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE

A0A6J1D6P1 U2 small nuclear ribonucleoprotein A'

3.8e-130

90.53

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEASNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS
        VNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKLKS+RVLDFKKVRNKERLEA +LFSSKEVEEEAK ESVKTFVPGEVE ASKP EEKQT NVS
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEASNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVT-------NDESTPMEQ
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNT  N TKD DD+TMSD  DE++V+       NDES PMEQ
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVT-------NDESTPMEQ

A0A6J1H905 U2 small nuclear ribonucleoprotein A'

4.9e-133

91.96

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEASNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS
        VNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKL+S+RVLDFKKVRNKERLEA NLFSSKEVEEEAKKESVKTFVPGEVE ASKPVEEKQT  +S
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEASNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHV-------TNDESTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNT  N TKD DDKTMSD GDEE+V       +NDESTPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHV-------TNDESTPMEQE

A0A6J1KWC8 U2 small nuclear ribonucleoprotein A'

1.4e-132

91.61

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEASNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS
        VNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKL+S+RVLDFKKVRNKERLEA NLFSSKEVEEEAKKESVKTFVPGEVE ASKPVEEKQT  +S
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEASNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHV-------TNDESTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNT  N TKD DDKT+SD GDEE+V       +NDESTPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHV-------TNDESTPMEQE

E5GB46 U2 small nuclear ribonucleoprotein a

1.1e-140

98.21

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEASNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS
        VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEA NLFSSKEVEEEAKKESVKTFV GEVEKASKPVEEKQTPNVS
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEASNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTA NITKDKDDKT S SGDEEHVTNDESTPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE

SwissProt top hits

e value

%identity

Alignment

P09661 U2 small nuclear ribonucleoprotein A'

1.5e-54

53.78

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  P L RL TLL+NNNRI RI   + + LP L  L+LTNN L
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEASNLFSSKEVEEEAK--KESVKTFVPGEVEKASKPVEEKQTPN
        V L ++DPLASL  L +LS+L N +T K +YRLYVI+K+  VRVLDF+KV+ KER EA  +F  K   + AK      KTF PG    A  P ++K+   
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEASNLFSSKEVEEEAK--KESVKTFVPGEVEKASKPVEEKQTPN

Query:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP
           P+P  + AIK AI N+ TL EV RL+  L+SGQ+P
Subjt:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP

P43333 U2 small nuclear ribonucleoprotein A'

1.9e-97

79.92

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MV+LT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLEN PYLNRLGTLLINNNRITRINPN+GEFLP LH+LVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEASNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS
        VNLVEIDPLAS+ KLQ+LSLLDNNITKK NYRLYVIHKLKS+RVLDF K++ KER EA++LFSSKE EEE KK S +     EV+K S+  E  +TP V 
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEASNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL
        APT EQI+AIKAAI+NSQT+EE+ARLEQALK GQ+PA L
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL

P57784 U2 small nuclear ribonucleoprotein A'

1.3e-53

53.36

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  P L RL TLL+NNNRI RI   + + LP L  L+LTNN L
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEASNLFSSKEVEEEAK--KESVKTFVPGEVEKASKPVEEKQTPN
        V L ++DPLASL  L +LS+L N +T K +YRLYVI+K+  VRVLDF+KV+ KER EA  +F  K   + AK      KTF PG    A  P ++K+   
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEASNLFSSKEVEEEAK--KESVKTFVPGEVEKASKPVEEKQTPN

Query:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP
           P+   + AIK AI N+ TL EV RL+  L+SGQ+P
Subjt:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP

Q4R8Y8 U2 small nuclear ribonucleoprotein A'

1.5e-54

53.78

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  P L RL TLL+NNNRI RI   + + LP L  L+LTNN L
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEASNLFSSKEVEEEAK--KESVKTFVPGEVEKASKPVEEKQTPN
        V L ++DPLASL  L +LS+L N +T K +YRLYVI+K+  VRVLDF+KV+ KER EA  +F  K   + AK      KTF PG    A  P ++K+   
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEASNLFSSKEVEEEAK--KESVKTFVPGEVEKASKPVEEKQTPN

Query:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP
           P+P  + AIK AI N+ TL EV RL+  L+SGQ+P
Subjt:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP

Q9BLB6 Probable U2 small nuclear ribonucleoprotein A'

4.3e-46

46.22

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MVRLT +L  + P F N++  RE++LRG KI VIEN+G T DQFD IDL+DN+I KL+N P  +RL TL ++NNRI  I P+I   LPNL TL LTNN +
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEASNLFSSKEVEE--EAKKESVKTFVPGEVEKASKPVEEKQTPN
          L +I+PLA   KL++++ + N IT K NYR+Y+I+KL +VRV+DF +VR  ER  A  +F  K  ++  +A ++SV T  P E+E       E  +  
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEASNLFSSKEVEE--EAKKESVKTFVPGEVEKASKPVEEKQTPN

Query:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP
         +  T E    IK AI N+++L EV  L+  L SG++P
Subjt:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP

Arabidopsis top hits

e value

%identity

Alignment

AT1G09760.1 U2 small nuclear ribonucleoprotein A

1.3e-98

79.92

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MV+LT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLEN PYLNRLGTLLINNNRITRINPN+GEFLP LH+LVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEASNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS
        VNLVEIDPLAS+ KLQ+LSLLDNNITKK NYRLYVIHKLKS+RVLDF K++ KER EA++LFSSKE EEE KK S +     EV+K S+  E  +TP V 
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEASNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL
        APT EQI+AIKAAI+NSQT+EE+ARLEQALK GQ+PA L
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL

Sequences

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CDS sequence

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ATGGTGAGACTGACGGTCGATTTAATTTGGAAAAGCCCTCATTTTTTCAATGCCATTAAAGAGCGAGAACTGGACCTTCGAGGTAACAAGATAGCAGTGATAGAAAACCT
AGGTGCCACCGAGGATCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTAAAGCTGGAAAATATGCCTTATCTTAATCGATTGGGCACATTGCTGATCAATAACA
ATAGAATCACTCGTATCAATCCAAATATTGGAGAGTTCTTGCCAAATTTACATACACTAGTTCTTACAAACAACAGACTTGTGAACTTAGTAGAGATTGACCCGCTGGCA
TCCCTTTCGAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACAAAGAAGCCAAATTATAGATTGTATGTCATCCACAAGTTGAAGTCAGTCCGGGTGCTTGATTT
CAAGAAAGTCAGAAACAAGGAGAGATTGGAGGCTAGCAATTTATTTTCGTCTAAGGAAGTTGAAGAAGAGGCGAAGAAGGAATCTGTGAAGACATTCGTTCCAGGTGAGG
TAGAGAAGGCATCCAAACCTGTGGAGGAGAAACAAACTCCAAACGTGTCTGCACCAACACCGGAGCAAATTATAGCTATAAAGGCGGCCATTGTTAATTCCCAAACCCTT
GAAGAGGTTGCAAGATTAGAACAGGCGCTCAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTCTAGAAGACAATACTGCACAAAACATCACAAAAGACAAAGACGATAA
GACAATGTCCGATAGCGGAGACGAAGAACATGTAACAAATGATGAATCCACACCTATGGAGCAGGAATAA

mRNA sequence

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AAATGTGAATGGATTCATTTGGGCCATTTGGGAAAGTCCATTAATGGGATCCACGCACCGGTCTTTTGCTGTCGTCTCTCGTCGACGCCTTCCCTTCTCTTCCTCCTAAA
GCCCTAAACCCCGTCGTCGTCGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGTGAGACTGACGGTCGATTTAATTTGGAAAAGCCCTCATTTTTTCA
ATGCCATTAAAGAGCGAGAACTGGACCTTCGAGGTAACAAGATAGCAGTGATAGAAAACCTAGGTGCCACCGAGGATCAATTTGATGCCATTGATTTGTCTGATAATGAG
ATTGTAAAGCTGGAAAATATGCCTTATCTTAATCGATTGGGCACATTGCTGATCAATAACAATAGAATCACTCGTATCAATCCAAATATTGGAGAGTTCTTGCCAAATTT
ACATACACTAGTTCTTACAAACAACAGACTTGTGAACTTAGTAGAGATTGACCCGCTGGCATCCCTTTCGAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACAA
AGAAGCCAAATTATAGATTGTATGTCATCCACAAGTTGAAGTCAGTCCGGGTGCTTGATTTCAAGAAAGTCAGAAACAAGGAGAGATTGGAGGCTAGCAATTTATTTTCG
TCTAAGGAAGTTGAAGAAGAGGCGAAGAAGGAATCTGTGAAGACATTCGTTCCAGGTGAGGTAGAGAAGGCATCCAAACCTGTGGAGGAGAAACAAACTCCAAACGTGTC
TGCACCAACACCGGAGCAAATTATAGCTATAAAGGCGGCCATTGTTAATTCCCAAACCCTTGAAGAGGTTGCAAGATTAGAACAGGCGCTCAAGTCAGGTCAGTTACCTG
CAGATTTGAATCTTCTAGAAGACAATACTGCACAAAACATCACAAAAGACAAAGACGATAAGACAATGTCCGATAGCGGAGACGAAGAACATGTAACAAATGATGAATCC
ACACCTATGGAGCAGGAATAACAGTAGAAAACTATTGCTGTGACTACTGTGGTGGCTCATCTGTAAGTGTTCATCGGTAGCGATCCTGTCGTGCTGAGTTGTGGACATTT
TTAAAAGAACCATTTGAGAAGTCTAAGCATGGCACTTCCCGGGCAGGGGATGTTAGGCGGATCTTTTGCTTCTCTTTGTAAGAGTTGGGTTCTCTTCTTCTTTTACTTTC
TTTCATTTTTCCTTTTTCGGGTAAAGAATATTCTTAAAATATGTACGGAGATTTTGTTGTATTTACCACACTTTGATGGCTTTTGAAATTTCCTTACTTTAAAATATAAT
ATGTAAAACGATTATTTAGTGTAGTGTGGGGTTTTGCCTCTTTTTTTTGTTCCTTTTATCTTCGAACATTGAAGTCAGAAAAAAGGAAAAGAAGAGAAAAAGTACAATTG
GTTTTTTGTACATT

Protein sequence

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MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLA
SLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEASNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTL
EEVARLEQALKSGQLPADLNLLEDNTAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE

CSPI06G07220 (gene) of Cucumber (PI 183967) v1 genome