CuGenDBv2

Gene ID	CSPI06G07290
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ribosome biogenesis NEP1-like protein
Genome location	Chr6:6198162..6199294
RNA-Seq Expression	CSPI06G07290
Synteny	CSPI06G07290
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

ADN33694.1 hypothetical protein [Cucumis melo subsp. melo]

3.7e-66

91.5

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Query:  MLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVI
        MLV TRIQGNRRF+SSTT PSAN    +SS SSSS GGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVI
Subjt:  MLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVI

Query:  TSADKFINKSFLRKVAHIQSDTKTLPDPVHPDPFTRPRNAETLKTAGIDPTRR
        TSADKFINKSFLRKVAHIQ DTKTLPDPVH DPFTRPRNAETLKTAG+DPTRR
Subjt:  TSADKFINKSFLRKVAHIQSDTKTLPDPVHPDPFTRPRNAETLKTAGIDPTRR

KAA0039866.1 putative Ribosome biogenesis protein NEP1-like [Cucumis melo var. makuwa]

9.9e-67

91.5

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Query:  MLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVI
        MLV TRIQGNRRF+SSTT PSAN   ++SS SSSS GGSG SEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVI
Subjt:  MLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVI

Query:  TSADKFINKSFLRKVAHIQSDTKTLPDPVHPDPFTRPRNAETLKTAGIDPTRR
        TSADKFINKSFLRKVAHIQ DTKTLPDPVHPDPFTRPRNAETLKTAG+DPTRR
Subjt:  TSADKFINKSFLRKVAHIQSDTKTLPDPVHPDPFTRPRNAETLKTAGIDPTRR

XP_004140656.2 uncharacterized protein LOC101206372 [Cucumis sativus]

1.5e-83

98.81

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Query:  MGLFRTSLANRMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKK
        MGLFRTSLAN+MWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKK
Subjt:  MGLFRTSLANRMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKK

Query:  KRESIPEVEDPDTVITSADKFINKSFLRKVAHIQSDTKTLPDPVHPDPFTRPRNAETLKTAGIDPTRR
        KRESIPEVEDPDTVITSADKFINKSFLRKVAHIQSDTKTL DPVHPDPFTRPRNAETLKTAGIDPTRR
Subjt:  KRESIPEVEDPDTVITSADKFINKSFLRKVAHIQSDTKTLPDPVHPDPFTRPRNAETLKTAGIDPTRR

XP_008459927.1 PREDICTED: uncharacterized protein LOC103498899 [Cucumis melo]

3.7e-74

91.07

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Query:  MGLFRTSLANRMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKK
        M LFRTSLAN+MWKSMLV TRIQGNRRF+SSTT PSAN    +SS SSSS GGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKK
Subjt:  MGLFRTSLANRMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKK

Query:  KRESIPEVEDPDTVITSADKFINKSFLRKVAHIQSDTKTLPDPVHPDPFTRPRNAETLKTAGIDPTRR
        KRESIPEVEDPDTVITSADKFINKSFLRKVAHIQ DTKTLPDPVH DPFTRPRNAETLKTAG+DPTRR
Subjt:  KRESIPEVEDPDTVITSADKFINKSFLRKVAHIQSDTKTLPDPVHPDPFTRPRNAETLKTAGIDPTRR

XP_038906484.1 uncharacterized protein LOC120092464 [Benincasa hispida]

9.9e-67

80.7

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Query:  MGLFRTSLANRMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSN---GGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNC
        M LF TSL N++WK+MLV +RIQG RR +SSTT P+ANNIQ ASS SSSS+   GGS  SEYMKGEYAPIYIV+GMVAV VSI THTAKQQLLHSP+VN 
Subjt:  MGLFRTSLANRMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSN---GGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNC

Query:  SKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQSDTKTLPDPVHPDPFTRPRNAETLKTAGIDPTRR
        SKKKRESIPEV+DPDT+I SA+KFINKSFLRKVAHIQ DTKTLPDPVHP+PFTRPRNAETLKTAG+DPTRR
Subjt:  SKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQSDTKTLPDPVHPDPFTRPRNAETLKTAGIDPTRR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KC39 Uncharacterized protein

7.3e-84

98.81

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Query:  MGLFRTSLANRMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKK
        MGLFRTSLAN+MWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKK
Subjt:  MGLFRTSLANRMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKK

Query:  KRESIPEVEDPDTVITSADKFINKSFLRKVAHIQSDTKTLPDPVHPDPFTRPRNAETLKTAGIDPTRR
        KRESIPEVEDPDTVITSADKFINKSFLRKVAHIQSDTKTL DPVHPDPFTRPRNAETLKTAGIDPTRR
Subjt:  KRESIPEVEDPDTVITSADKFINKSFLRKVAHIQSDTKTLPDPVHPDPFTRPRNAETLKTAGIDPTRR

A0A1S3CBE5 uncharacterized protein LOC103498899

1.8e-74

91.07

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Query:  MGLFRTSLANRMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKK
        M LFRTSLAN+MWKSMLV TRIQGNRRF+SSTT PSAN    +SS SSSS GGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKK
Subjt:  MGLFRTSLANRMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKK

Query:  KRESIPEVEDPDTVITSADKFINKSFLRKVAHIQSDTKTLPDPVHPDPFTRPRNAETLKTAGIDPTRR
        KRESIPEVEDPDTVITSADKFINKSFLRKVAHIQ DTKTLPDPVH DPFTRPRNAETLKTAG+DPTRR
Subjt:  KRESIPEVEDPDTVITSADKFINKSFLRKVAHIQSDTKTLPDPVHPDPFTRPRNAETLKTAGIDPTRR

A0A5D3DLZ1 Putative Ribosome biogenesis protein NEP1-like

4.8e-67

91.5

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Query:  MLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVI
        MLV TRIQGNRRF+SSTT PSAN   ++SS SSSS GGSG SEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVI
Subjt:  MLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVI

Query:  TSADKFINKSFLRKVAHIQSDTKTLPDPVHPDPFTRPRNAETLKTAGIDPTRR
        TSADKFINKSFLRKVAHIQ DTKTLPDPVHPDPFTRPRNAETLKTAG+DPTRR
Subjt:  TSADKFINKSFLRKVAHIQSDTKTLPDPVHPDPFTRPRNAETLKTAGIDPTRR

A0A6J1D5I0 uncharacterized protein LOC111017496 isoform X1

2.4e-50

73.42

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Query:  RMWKSMLV--ETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEV
        ++WKSMLV   +RI+G R F+SSTT         ASS SSS       SEYMKGEYAPIYIVMGMV V V+I THTAKQQLLHSP+V  SKKKRESIPEV
Subjt:  RMWKSMLV--ETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEV

Query:  EDPDTVITSADKFINKSFLRKVAHIQSDTKTLPDPVHPDPFTRPRNAETLKTAGIDPT
        +DPDTVITSADKF+NKSFLRKVAHIQ   KTL DP HPDPFTRPRNAETLKTAG+DPT
Subjt:  EDPDTVITSADKFINKSFLRKVAHIQSDTKTLPDPVHPDPFTRPRNAETLKTAGIDPT

E5GB52 Uncharacterized protein

1.8e-66

91.5

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Query:  MLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVI
        MLV TRIQGNRRF+SSTT PSAN    +SS SSSS GGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVI
Subjt:  MLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVI

Query:  TSADKFINKSFLRKVAHIQSDTKTLPDPVHPDPFTRPRNAETLKTAGIDPTRR
        TSADKFINKSFLRKVAHIQ DTKTLPDPVH DPFTRPRNAETLKTAG+DPTRR
Subjt:  TSADKFINKSFLRKVAHIQSDTKTLPDPVHPDPFTRPRNAETLKTAGIDPTRR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G63060.1 unknown protein

9.9e-25

42.28

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Query:  VETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITS
        V  +  G+RRF ++T    A    N  S              + GE+AP+ I+ G V + V +A H+ KQQL+H+P ++  K +R ++ EV+DP+  ++S
Subjt:  VETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITS

Query:  ADKFINKSFLRKVAHIQSDTKT-LPDPVHPDPFTRPRNAETLKTAGIDP
        ADKFINKS+LRKV  IQ  +K  L DP  P+PFT PRNAETL + G+ P
Subjt:  ADKFINKSFLRKVAHIQSDTKT-LPDPVHPDPFTRPRNAETLKTAGIDP

AT5G07330.1 unknown protein

2.1e-19

34.25

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Query:  IQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKF
        +Q  R ++ +TT P +     A++        +  +   KG++ P+Y+ +G++++ V+   +TA   L  +P V  +KK RE++PE+EDPD V+  AD+F
Subjt:  IQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKF

Query:  INKSFLRKVAHIQSDTK--TLPDPVHPDPFTRPRNAETLKTAGIDP
         N+S+ RK+AH+Q   K   + DP+  D F     A TLK  G+DP
Subjt:  INKSFLRKVAHIQSDTK--TLPDPVHPDPFTRPRNAETLKTAGIDP

Sequences

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CDS sequence

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ATGGGTTTATTCAGAACCTCTCTCGCAAATAGGATGTGGAAATCAATGCTTGTCGAAACTAGGATCCAAGGGAACCGTCGTTTTTCTTCATCCACTACAACCCCATCTGC
CAATAATATTCAGAATGCTTCTTCTCCTTCTTCTTCTTCCAATGGCGGTTCCGGTGGGAGTGAGTACATGAAAGGCGAGTACGCCCCAATCTACATTGTGATGGGAATGG
TGGCAGTGGTCGTGTCTATCGCAACCCACACGGCGAAGCAACAACTGCTGCATTCGCCGATGGTTAACTGTAGCAAGAAGAAGAGGGAGAGCATTCCGGAGGTGGAGGAC
CCCGACACCGTCATCACTTCCGCTGACAAATTTATTAACAAATCCTTTCTTAGGAAGGTTGCTCACATTCAGAGTGACACGAAGACACTACCCGATCCAGTTCATCCCGA
CCCATTTACCCGGCCACGTAATGCTGAAACTCTGAAAACTGCTGGAATTGACCCTACCCGCCGTTGA

mRNA sequence

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AACTTCTGAAATCCCACAAAAGAAAATGGGTTTATTCAGAACCTCTCTCGCAAATAGGATGTGGAAATCAATGCTTGTCGAAACTAGGATCCAAGGGAACCGTCGTTTTT
CTTCATCCACTACAACCCCATCTGCCAATAATATTCAGAATGCTTCTTCTCCTTCTTCTTCTTCCAATGGCGGTTCCGGTGGGAGTGAGTACATGAAAGGCGAGTACGCC
CCAATCTACATTGTGATGGGAATGGTGGCAGTGGTCGTGTCTATCGCAACCCACACGGCGAAGCAACAACTGCTGCATTCGCCGATGGTTAACTGTAGCAAGAAGAAGAG
GGAGAGCATTCCGGAGGTGGAGGACCCCGACACCGTCATCACTTCCGCTGACAAATTTATTAACAAATCCTTTCTTAGGAAGGTTGCTCACATTCAGAGTGACACGAAGA
CACTACCCGATCCAGTTCATCCCGACCCATTTACCCGGCCACGTAATGCTGAAACTCTGAAAACTGCTGGAATTGACCCTACCCGCCGTTGAACAACTATGAAAAATACT
TACAATGCACTATCATTGTTATATGTGTATTGTTGTGTGTGTATATTTATTTAAAGCTCTTCTCTACTTCATTCTGCTTTTCTCTTCACCTTTTTTTGTATTGACTGTCA
AGTTTCTTCAAAAGTAGAAGTACTAAGCTACTGCTAGGGGAATGTGGCTGTTATATAATTTGTTCTGTTAGTTTTCTTTTCCGGACAATAAAGCCAATTTAATTGGAATA
CCC

Protein sequence

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MGLFRTSLANRMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVED
PDTVITSADKFINKSFLRKVAHIQSDTKTLPDPVHPDPFTRPRNAETLKTAGIDPTRR

CSPI06G07290 (gene) of Cucumber (PI 183967) v1 genome