; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI06G07300 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G07300
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description40S ribosomal protein S27
Genome locationChr6:6201640..6202427
RNA-Seq ExpressionCSPI06G07300
SyntenyCSPI06G07300
Gene Ontology termsGO:0000028 - ribosomal small subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0042788 - polysomal ribosome (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000592 - Ribosomal protein S27
IPR011332 - Zinc-binding ribosomal protein
IPR023407 - Ribosomal protein S27, zinc-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_006295333.1 40S ribosomal protein S27-2 [Capsella rubella]5.6e-4298.84Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG+AKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

XP_008459925.1 PREDICTED: 40S ribosomal protein S27-2 [Cucumis melo]2.5e-42100Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

XP_022953224.1 uncharacterized protein LOC111455834 [Cucurbita moschata]1.2e-4777.61Show/hide
Query:  PLLYIHPRRRSSPLSSPSSHRSAFILSRTVVGVLGFAIHTVP-LPLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHS
        PLLYI PRRRS+P+S  SS+R   + +        F +       LIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHS
Subjt:  PLLYIHPRRRSSPLSSPSSHRSAFILSRTVVGVLGFAIHTVP-LPLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHS

Query:  QTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        QTVVVCGNCQTVLCQPTGGRA+LTEGCSFRRKGD
Subjt:  QTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

XP_022991567.1 40S ribosomal protein S27-2-like [Cucurbita maxima]6.1e-4979.1Show/hide
Query:  PLLYIHPRRRSSPLSSPSSHRSAFILSRTVVGVLGFAIHTVP-LPLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHS
        PLLYIHPRRRSSP+S  SS+R   + +        F +       LIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHS
Subjt:  PLLYIHPRRRSSPLSSPSSHRSAFILSRTVVGVLGFAIHTVP-LPLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHS

Query:  QTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        QTVVVCGNCQTVLCQPTGGRA+LTEGCSFRRKGD
Subjt:  QTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

XP_027915751.1 40S ribosomal protein S27-2-like [Vigna unguiculata]8.6e-4381.82Show/hide
Query:  FILSRTVVGVLGFAIHTVPLPLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLT
        F+L   +   LGF    +P+ L  MVLQNDIDLLNPPAE+EKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRA+LT
Subjt:  FILSRTVVGVLGFAIHTVPLPLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLT

Query:  EGCSFRRKGD
        EGCSFR+KGD
Subjt:  EGCSFRRKGD

TrEMBL top hitse value%identityAlignment
A0A0A0K9G0 40S ribosomal protein S273.4e-7798.62Show/hide
Query:  MDGYTLCLMEGCPLLYIHPRRRSSPLSSPSSHRSAFILSRTVVGVLGFAIHTVPLPLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQG
        MDGYTLCLMEGCPLLYIHPRRRSSPLSSPSSHRSAF+LSRTVVGVLGFAIHT PLPLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQG
Subjt:  MDGYTLCLMEGCPLLYIHPRRRSSPLSSPSSHRSAFILSRTVVGVLGFAIHTVPLPLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQG

Query:  CFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        CFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
Subjt:  CFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

A0A5D3DLW4 40S ribosomal protein S271.2e-42100Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

A0A6J1GP15 40S ribosomal protein S275.6e-4877.61Show/hide
Query:  PLLYIHPRRRSSPLSSPSSHRSAFILSRTVVGVLGFAIHTVP-LPLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHS
        PLLYI PRRRS+P+S  SS+R   + +        F +       LIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHS
Subjt:  PLLYIHPRRRSSPLSSPSSHRSAFILSRTVVGVLGFAIHTVP-LPLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHS

Query:  QTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        QTVVVCGNCQTVLCQPTGGRA+LTEGCSFRRKGD
Subjt:  QTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

A0A6J1JM72 40S ribosomal protein S273.0e-4979.1Show/hide
Query:  PLLYIHPRRRSSPLSSPSSHRSAFILSRTVVGVLGFAIHTVP-LPLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHS
        PLLYIHPRRRSSP+S  SS+R   + +        F +       LIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHS
Subjt:  PLLYIHPRRRSSPLSSPSSHRSAFILSRTVVGVLGFAIHTVP-LPLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHS

Query:  QTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        QTVVVCGNCQTVLCQPTGGRA+LTEGCSFRRKGD
Subjt:  QTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

E5GB53 40S ribosomal protein S271.2e-42100Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

SwissProt top hitse value%identityAlignment
O64650 40S ribosomal protein S27-19.8e-4294.05Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQT+LC PTGG+AKLTEGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK

P47903 40S ribosomal protein S271.2e-3683.72Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+C +VLC PTG   +LTEGCSFRRK D
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

Q8L953 40S ribosomal protein S27-36.4e-4192.86Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK
        MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG+A+L EGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK

Q96564 40S ribosomal protein S272.2e-4193.02Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  CQTVLCQPTGG+A+LTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

Q9M2F1 40S ribosomal protein S27-29.5e-4597.67Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQT+LCQPTGG+AKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

Arabidopsis top hitse value%identityAlignment
AT2G45710.1 Zinc-binding ribosomal protein family protein7.0e-4394.05Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQT+LC PTGG+AKLTEGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK

AT3G61110.1 ribosomal protein S276.8e-4697.67Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQT+LCQPTGG+AKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

AT3G61111.1 Zinc-binding ribosomal protein family protein4.4e-3782.56Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLV SPNS+FM V+C  C NITT+FSHSQTVVVCG CQ VLCQPTGG+AKLT GCSFR+  D
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

AT5G47930.1 Zinc-binding ribosomal protein family protein4.5e-4292.86Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK
        MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG+A+L EGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGGTTATACCCTCTGCCTGATGGAAGGGTGTCCGCTCCTTTATATTCATCCTAGACGGCGCTCTTCTCCTCTTTCTTCACCTTCATCGCACCGCTCCGCCTTCAT
TCTCTCGCGAACTGTCGTTGGAGTTTTAGGGTTTGCGATCCACACAGTTCCCCTTCCTTTGATCATCATGGTTCTTCAAAACGACATCGATTTGCTCAACCCCCCCGCCG
AGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAATCGCCCAACTCATTCTTCATGGACGTGAAATGCCAGGGTTGCTTTAACATAACCACTGTATTCAGTCAT
TCACAAACAGTTGTGGTGTGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGGGGGCGAGCTAAGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACGGTTATACCCTCTGCCTGATGGAAGGGTGTCCGCTCCTTTATATTCATCCTAGACGGCGCTCTTCTCCTCTTTCTTCACCTTCATCGCACCGCTCCGCCTTCAT
TCTCTCGCGAACTGTCGTTGGAGTTTTAGGGTTTGCGATCCACACAGTTCCCCTTCCTTTGATCATCATGGTTCTTCAAAACGACATCGATTTGCTCAACCCCCCCGCCG
AGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAATCGCCCAACTCATTCTTCATGGACGTGAAATGCCAGGGTTGCTTTAACATAACCACTGTATTCAGTCAT
TCACAAACAGTTGTGGTGTGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGGGGGCGAGCTAAGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGATTAA
Protein sequenceShow/hide protein sequence
MDGYTLCLMEGCPLLYIHPRRRSSPLSSPSSHRSAFILSRTVVGVLGFAIHTVPLPLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSH
SQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD